Wall clock time and date at job start Mon Mar 30 2020 01:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50696 * 120.00018 * 2 1 4 4 N 1.46499 * 109.47242 * 124.99605 * 3 2 1 5 5 C 1.46500 * 120.00123 * 270.00254 * 4 3 2 6 6 C 1.50700 * 109.47101 * 269.99899 * 5 4 3 7 7 H 1.08002 * 120.00255 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00213 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99754 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00483 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47099 * 59.99476 * 10 8 6 12 12 H 1.48494 * 109.47597 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.46975 * 300.00035 * 10 8 6 14 14 C 1.34779 * 119.99712 * 90.00414 * 4 3 2 15 15 O 1.21282 * 119.99927 * 180.02562 * 14 4 3 16 16 C 1.50699 * 120.00033 * 359.97438 * 14 4 3 17 17 C 1.53006 * 109.46866 * 180.02562 * 16 14 4 18 18 C 1.50699 * 109.46866 * 179.97438 * 17 16 14 19 19 N 1.31799 * 119.12259 * 269.72884 * 18 17 16 20 20 C 1.32339 * 120.81764 * 179.76179 * 19 18 17 21 21 C 1.38595 * 119.10074 * 0.50108 * 20 19 18 22 22 C 1.38597 * 118.40666 * 359.75574 * 21 20 19 23 23 N 1.31796 * 119.12426 * 89.99734 * 18 17 16 24 24 H 1.08006 * 119.99676 * 179.97438 * 1 2 3 25 25 H 1.08001 * 120.00336 * 0.02562 * 1 2 3 26 26 H 1.08003 * 120.00251 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.47354 * 5.00063 * 3 2 1 28 28 H 1.09003 * 109.47595 * 244.99874 * 3 2 1 29 29 H 1.08993 * 109.47349 * 29.99900 * 5 4 3 30 30 H 1.09005 * 109.47039 * 150.00075 * 5 4 3 31 31 H 0.96998 * 120.00012 * 179.97438 * 9 8 6 32 32 H 1.08993 * 109.47512 * 60.00410 * 16 14 4 33 33 H 1.09000 * 109.47247 * 300.00119 * 16 14 4 34 34 H 1.09000 * 109.47050 * 299.99952 * 17 16 14 35 35 H 1.09001 * 109.46801 * 60.00064 * 17 16 14 36 36 H 1.07993 * 120.44919 * 180.23695 * 20 19 18 37 37 H 1.08002 * 120.79542 * 179.76950 * 21 20 19 38 38 H 1.07998 * 120.45349 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9936 1.3319 1.1315 5 6 2.5587 1.8650 2.4249 6 6 2.8440 3.3437 2.4804 7 1 3.3038 3.8370 1.6368 8 6 2.5191 4.0666 3.6086 9 7 1.9597 3.4658 4.6360 10 14 2.8721 5.8996 3.6772 11 1 2.1354 6.5868 2.5862 12 1 2.4314 6.4399 4.9882 13 1 4.3298 6.1295 3.5113 14 6 4.2496 0.8662 0.9824 15 8 5.0196 0.8880 1.9192 16 6 4.6968 0.3174 -0.3479 17 6 6.1531 -0.1411 -0.2469 18 6 6.6001 -0.6905 -1.5770 19 7 6.4429 -1.9752 -1.8260 20 6 6.8192 -2.4923 -2.9846 21 6 7.3941 -1.6654 -3.9368 22 6 7.5476 -0.3211 -3.6365 23 7 7.1428 0.1255 -2.4584 24 1 -0.5400 -0.9354 -0.0004 25 1 -0.5401 0.9353 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3585 2.1316 0.0896 28 1 2.6213 1.4026 -0.9314 29 1 1.4886 1.6967 2.5459 30 1 3.0988 1.3603 3.2260 31 1 1.7314 3.9743 5.4299 32 1 4.6120 1.0937 -1.1083 33 1 4.0677 -0.5296 -0.6216 34 1 6.7824 0.7057 0.0270 35 1 6.2375 -0.9175 0.5135 36 1 6.6841 -3.5450 -3.1837 37 1 7.7146 -2.0592 -4.8900 38 1 7.9911 0.3529 -4.3544 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359392600.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:04 Heat of formation + Delta-G solvation = 30.183700 kcal Electronic energy + Delta-G solvation = -20461.560133 eV Core-core repulsion = 17304.854885 eV Total energy + Delta-G solvation = -3156.705249 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.17596 -39.08285 -35.69976 -34.20375 -33.86036 -33.12617 -32.02884 -30.87689 -27.78096 -25.81845 -25.09738 -24.71360 -22.92815 -21.64375 -19.90351 -18.30909 -17.69799 -17.23482 -16.46287 -16.21251 -15.60186 -15.31811 -15.00733 -14.89596 -14.47150 -14.09350 -13.78288 -13.43350 -13.19738 -12.60926 -12.45015 -12.01105 -11.84795 -11.62146 -11.23884 -11.09526 -11.01499 -10.97610 -10.86713 -10.80332 -10.53854 -10.15266 -9.71758 -9.61705 -9.38141 -9.15738 -8.86180 -8.39185 -7.64969 -6.00279 -4.04981 0.69544 0.91074 2.47794 3.34840 3.39142 3.40739 3.48129 3.54941 3.73708 4.01060 4.15167 4.37822 4.48942 4.76701 4.87840 5.02161 5.20055 5.24127 5.29586 5.33593 5.41721 5.48344 5.54162 5.65646 5.83409 6.03684 6.10704 6.12766 6.23612 6.35397 6.82212 6.83623 6.94189 7.12880 7.49543 7.59101 7.96239 7.96853 8.27819 8.44651 8.93845 9.12392 9.59917 11.07813 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.020074 B = 0.004153 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.527711 B = 6741.080927 C = 7524.639397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.167 4.167 3 C 0.136 3.864 4 N -0.593 5.593 5 C 0.247 3.753 6 C -0.527 4.527 7 H 0.057 0.943 8 C 0.061 3.939 9 N -0.895 5.895 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.276 1.276 14 C 0.509 3.491 15 O -0.539 6.539 16 C -0.130 4.130 17 C -0.039 4.039 18 C 0.329 3.671 19 N -0.515 5.515 20 C 0.148 3.852 21 C -0.241 4.241 22 C 0.149 3.851 23 N -0.515 5.515 24 H 0.093 0.907 25 H 0.099 0.901 26 H 0.104 0.896 27 H 0.087 0.913 28 H 0.073 0.927 29 H 0.032 0.968 30 H 0.044 0.956 31 H 0.263 0.737 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.167 0.833 37 H 0.145 0.855 38 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.136 -10.740 -18.623 22.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.187 4.187 3 C 0.012 3.988 4 N -0.324 5.324 5 C 0.128 3.872 6 C -0.566 4.566 7 H 0.075 0.925 8 C -0.141 4.141 9 N -0.534 5.534 10 Si 0.725 3.275 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.201 1.201 14 C 0.295 3.705 15 O -0.417 6.417 16 C -0.171 4.171 17 C -0.078 4.078 18 C 0.063 3.937 19 N -0.229 5.229 20 C -0.018 4.018 21 C -0.263 4.263 22 C -0.018 4.018 23 N -0.228 5.228 24 H 0.112 0.888 25 H 0.117 0.883 26 H 0.122 0.878 27 H 0.105 0.895 28 H 0.091 0.909 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.184 0.816 37 H 0.163 0.837 38 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 5.181 -10.308 -17.021 20.562 hybrid contribution 0.358 0.565 -0.985 1.191 sum 5.539 -9.743 -18.006 21.209 Atomic orbital electron populations 1.23808 0.95842 1.01721 1.00761 1.23439 0.96407 0.99090 0.99734 1.20579 0.93139 0.95291 0.89779 1.48208 1.10465 1.60191 1.13565 1.19267 0.95372 0.93715 0.78801 1.21415 1.40515 0.93382 1.01254 0.92478 1.24928 0.95075 0.98723 0.95338 1.69927 1.42060 1.36249 1.05164 0.86566 0.78857 0.84949 0.77099 1.20285 1.21213 1.20144 1.20169 0.82384 0.78567 0.89338 1.90677 1.52515 1.56474 1.42012 1.21598 0.95859 1.01978 0.97686 1.20194 0.96088 1.02423 0.89094 1.23418 0.89225 0.85375 0.95720 1.68347 1.18528 1.14754 1.21305 1.23271 0.89839 1.00712 0.88011 1.22889 1.04227 0.96522 1.02683 1.23285 0.91644 0.93833 0.93008 1.68355 1.11596 1.39932 1.02951 0.88816 0.88300 0.87770 0.89466 0.90859 0.95013 0.93841 0.92700 0.89228 0.89373 0.88186 0.88319 0.81600 0.83673 0.81575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.44 14.32 29.02 0.42 -2.03 16 2 C -0.17 -2.45 9.74 -36.03 -0.35 -2.80 16 3 C 0.14 2.26 5.65 -5.20 -0.03 2.24 16 4 N -0.59 -12.72 2.44 -176.43 -0.43 -13.15 16 5 C 0.25 6.56 5.16 -5.19 -0.03 6.54 16 6 C -0.53 -15.10 9.39 -34.44 -0.32 -15.42 16 7 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 9 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 10 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 C 0.51 10.67 7.67 -10.99 -0.08 10.58 16 15 O -0.54 -13.57 15.56 5.56 0.09 -13.49 16 16 C -0.13 -2.02 4.23 -27.88 -0.12 -2.14 16 17 C -0.04 -0.59 4.94 -27.88 -0.14 -0.73 16 18 C 0.33 4.55 6.90 -157.19 -1.08 3.47 16 19 N -0.52 -6.58 10.34 -10.73 -0.11 -6.69 16 20 C 0.15 1.34 11.31 -17.20 -0.19 1.15 16 21 C -0.24 -1.81 10.17 -39.32 -0.40 -2.21 16 22 C 0.15 1.38 11.31 -17.20 -0.19 1.18 16 23 N -0.51 -6.72 10.33 -10.72 -0.11 -6.83 16 24 H 0.09 1.08 8.06 -52.48 -0.42 0.65 16 25 H 0.10 1.29 7.84 -52.49 -0.41 0.88 16 26 H 0.10 1.45 7.83 -52.48 -0.41 1.04 16 27 H 0.09 1.50 7.72 -51.93 -0.40 1.10 16 28 H 0.07 1.03 6.44 -51.93 -0.33 0.70 16 29 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 30 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 31 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.09 1.30 7.40 -51.93 -0.38 0.92 16 33 H 0.09 1.23 7.77 -51.93 -0.40 0.83 16 34 H 0.10 1.62 8.10 -51.93 -0.42 1.20 16 35 H 0.10 1.55 8.10 -51.93 -0.42 1.13 16 36 H 0.17 0.93 8.06 -52.49 -0.42 0.51 16 37 H 0.15 0.58 8.06 -52.49 -0.42 0.15 16 38 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 334.10 15.07 5.03 5.03 Total: -1.00 -34.81 334.10 -7.67 -42.48 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -5.23 Total: 0.24 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -2.63 Total: 1.50 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: 0.08 Total: -52.84 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: 0.09 Total: -13.49 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.81 -7.67 -42.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359392600.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.659 kcal (2) G-P(sol) polarization free energy of solvation -34.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds