Wall clock time and date at job start Mon Mar 30 2020 01:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50696 * 120.00018 * 2 1 4 4 N 1.46499 * 109.47242 * 124.99605 * 3 2 1 5 5 C 1.46500 * 120.00123 * 270.00254 * 4 3 2 6 6 C 1.50700 * 109.47101 * 269.99899 * 5 4 3 7 7 H 1.08002 * 120.00255 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00213 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99754 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00483 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47099 * 59.99476 * 10 8 6 12 12 H 1.48494 * 109.47597 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.46975 * 300.00035 * 10 8 6 14 14 C 1.34779 * 119.99712 * 90.00414 * 4 3 2 15 15 O 1.21282 * 119.99927 * 180.02562 * 14 4 3 16 16 C 1.50699 * 120.00033 * 359.97438 * 14 4 3 17 17 C 1.53006 * 109.46866 * 180.02562 * 16 14 4 18 18 C 1.50699 * 109.46866 * 179.97438 * 17 16 14 19 19 N 1.31799 * 119.12259 * 269.72884 * 18 17 16 20 20 C 1.32339 * 120.81764 * 179.76179 * 19 18 17 21 21 C 1.38595 * 119.10074 * 0.50108 * 20 19 18 22 22 C 1.38597 * 118.40666 * 359.75574 * 21 20 19 23 23 N 1.31796 * 119.12426 * 89.99734 * 18 17 16 24 24 H 1.08006 * 119.99676 * 179.97438 * 1 2 3 25 25 H 1.08001 * 120.00336 * 0.02562 * 1 2 3 26 26 H 1.08003 * 120.00251 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.47354 * 5.00063 * 3 2 1 28 28 H 1.09003 * 109.47595 * 244.99874 * 3 2 1 29 29 H 1.08993 * 109.47349 * 29.99900 * 5 4 3 30 30 H 1.09005 * 109.47039 * 150.00075 * 5 4 3 31 31 H 0.96998 * 120.00012 * 179.97438 * 9 8 6 32 32 H 1.08993 * 109.47512 * 60.00410 * 16 14 4 33 33 H 1.09000 * 109.47247 * 300.00119 * 16 14 4 34 34 H 1.09000 * 109.47050 * 299.99952 * 17 16 14 35 35 H 1.09001 * 109.46801 * 60.00064 * 17 16 14 36 36 H 1.07993 * 120.44919 * 180.23695 * 20 19 18 37 37 H 1.08002 * 120.79542 * 179.76950 * 21 20 19 38 38 H 1.07998 * 120.45349 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9936 1.3319 1.1315 5 6 2.5587 1.8650 2.4249 6 6 2.8440 3.3437 2.4804 7 1 3.3038 3.8370 1.6368 8 6 2.5191 4.0666 3.6086 9 7 1.9597 3.4658 4.6360 10 14 2.8721 5.8996 3.6772 11 1 2.1354 6.5868 2.5862 12 1 2.4314 6.4399 4.9882 13 1 4.3298 6.1295 3.5113 14 6 4.2496 0.8662 0.9824 15 8 5.0196 0.8880 1.9192 16 6 4.6968 0.3174 -0.3479 17 6 6.1531 -0.1411 -0.2469 18 6 6.6001 -0.6905 -1.5770 19 7 6.4429 -1.9752 -1.8260 20 6 6.8192 -2.4923 -2.9846 21 6 7.3941 -1.6654 -3.9368 22 6 7.5476 -0.3211 -3.6365 23 7 7.1428 0.1255 -2.4584 24 1 -0.5400 -0.9354 -0.0004 25 1 -0.5401 0.9353 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3585 2.1316 0.0896 28 1 2.6213 1.4026 -0.9314 29 1 1.4886 1.6967 2.5459 30 1 3.0988 1.3603 3.2260 31 1 1.7314 3.9743 5.4299 32 1 4.6120 1.0937 -1.1083 33 1 4.0677 -0.5296 -0.6216 34 1 6.7824 0.7057 0.0270 35 1 6.2375 -0.9175 0.5135 36 1 6.6841 -3.5450 -3.1837 37 1 7.7146 -2.0592 -4.8900 38 1 7.9911 0.3529 -4.3544 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359392600.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:04 Heat of formation + Delta-G solvation = 7.357116 kcal Electronic energy + Delta-G solvation = -20462.549968 eV Core-core repulsion = 17304.854885 eV Total energy + Delta-G solvation = -3157.695084 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.98883 -40.74662 -37.28602 -35.43598 -34.93378 -34.65883 -33.66958 -31.94657 -29.65638 -27.10996 -26.66165 -25.43384 -24.57666 -22.90822 -21.13712 -19.89076 -18.66262 -18.51421 -18.25449 -17.37231 -17.27552 -16.52426 -16.30248 -16.06026 -15.79655 -15.53808 -14.89895 -14.53717 -14.36522 -14.20231 -13.91035 -13.76656 -13.37082 -13.04190 -12.96874 -12.86425 -12.55578 -12.30264 -12.20121 -12.10559 -11.83451 -11.74844 -11.68647 -10.70097 -10.63590 -10.38169 -10.31777 -10.18169 -9.47316 -8.21438 -6.36373 -0.06908 0.20731 1.32067 1.37177 1.41681 1.48953 1.80743 2.32256 2.44665 2.81416 2.95738 3.08169 3.28291 3.68525 3.80837 4.00437 4.05634 4.10815 4.19956 4.26243 4.26764 4.40651 4.53930 4.59521 4.76364 4.84233 5.00619 5.01990 5.04631 5.06466 5.23875 5.49380 5.52737 5.70662 5.76539 5.95436 6.07284 6.11413 6.68932 6.76870 7.15940 7.28118 7.45755 8.85735 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.020074 B = 0.004153 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.527711 B = 6741.080927 C = 7524.639397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.185 4.185 3 C 0.133 3.867 4 N -0.598 5.598 5 C 0.264 3.736 6 C -0.545 4.545 7 H 0.054 0.946 8 C 0.008 3.992 9 N -0.928 5.928 10 Si 0.968 3.032 11 H -0.260 1.260 12 H -0.278 1.278 13 H -0.278 1.278 14 C 0.501 3.499 15 O -0.592 6.592 16 C -0.107 4.107 17 C -0.032 4.032 18 C 0.310 3.690 19 N -0.540 5.540 20 C 0.136 3.864 21 C -0.216 4.216 22 C 0.135 3.865 23 N -0.544 5.544 24 H 0.117 0.883 25 H 0.099 0.901 26 H 0.113 0.887 27 H 0.078 0.922 28 H 0.103 0.897 29 H 0.021 0.979 30 H -0.003 1.003 31 H 0.267 0.733 32 H 0.106 0.894 33 H 0.110 0.890 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.201 0.799 37 H 0.190 0.810 38 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.185 -11.099 -21.969 25.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.204 4.204 3 C 0.011 3.989 4 N -0.328 5.328 5 C 0.143 3.857 6 C -0.584 4.584 7 H 0.072 0.928 8 C -0.191 4.191 9 N -0.568 5.568 10 Si 0.792 3.208 11 H -0.184 1.184 12 H -0.203 1.203 13 H -0.203 1.203 14 C 0.290 3.710 15 O -0.474 6.474 16 C -0.148 4.148 17 C -0.072 4.072 18 C 0.042 3.958 19 N -0.255 5.255 20 C -0.029 4.029 21 C -0.237 4.237 22 C -0.030 4.030 23 N -0.258 5.258 24 H 0.135 0.865 25 H 0.118 0.882 26 H 0.131 0.869 27 H 0.096 0.904 28 H 0.121 0.879 29 H 0.039 0.961 30 H 0.015 0.985 31 H 0.076 0.924 32 H 0.124 0.876 33 H 0.128 0.872 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.217 0.783 37 H 0.207 0.793 38 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 5.208 -10.685 -20.432 23.638 hybrid contribution 0.350 0.578 -0.038 0.677 sum 5.558 -10.107 -20.470 23.496 Atomic orbital electron populations 1.24049 0.95460 1.02914 0.98207 1.23327 0.96864 0.98244 1.01981 1.20816 0.92689 0.96385 0.88980 1.48207 1.11693 1.59771 1.13148 1.18695 0.93843 0.92724 0.80417 1.21699 1.40698 0.94458 1.01505 0.92773 1.25861 0.94603 1.03815 0.94801 1.70052 1.42768 1.38228 1.05755 0.85471 0.78522 0.78935 0.77911 1.18408 1.20286 1.20318 1.21126 0.81545 0.77577 0.90781 1.90641 1.53914 1.58534 1.44276 1.21453 0.96437 1.02772 0.94132 1.19949 0.95472 1.01253 0.90508 1.22838 0.91435 0.86169 0.95319 1.68276 1.19620 1.14207 1.23400 1.23953 0.89298 1.02518 0.87117 1.23341 1.01357 0.95354 1.03647 1.23938 0.91257 0.95560 0.92221 1.68276 1.12459 1.40686 1.04408 0.86478 0.88246 0.86897 0.90357 0.87947 0.96074 0.98494 0.92395 0.87581 0.87161 0.90242 0.89836 0.78250 0.79294 0.78438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.18 14.32 67.79 0.97 -3.21 16 2 C -0.19 -5.20 9.74 25.65 0.25 -4.95 16 3 C 0.13 4.38 5.65 85.63 0.48 4.87 16 4 N -0.60 -26.45 2.44 -830.50 -2.03 -28.47 16 5 C 0.26 14.75 5.16 85.63 0.44 15.19 16 6 C -0.55 -32.22 9.39 25.60 0.24 -31.98 16 7 H 0.05 3.15 7.81 -2.91 -0.02 3.13 16 8 C 0.01 0.48 5.46 84.65 0.46 0.94 16 9 N -0.93 -57.27 13.29 21.45 0.28 -56.99 16 10 Si 0.97 45.73 29.54 68.60 2.03 47.76 16 11 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 12 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 13 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 14 C 0.50 21.83 7.67 87.66 0.67 22.50 16 15 O -0.59 -31.78 15.56 -3.04 -0.05 -31.83 16 16 C -0.11 -3.35 4.23 29.85 0.13 -3.23 16 17 C -0.03 -1.02 4.94 29.85 0.15 -0.87 16 18 C 0.31 8.45 6.90 138.75 0.96 9.41 16 19 N -0.54 -13.12 10.34 -187.85 -1.94 -15.06 16 20 C 0.14 2.05 11.31 84.70 0.96 3.01 16 21 C -0.22 -2.35 10.17 22.44 0.23 -2.12 16 22 C 0.13 2.11 11.31 84.70 0.96 3.07 16 23 N -0.54 -13.60 10.33 -187.84 -1.94 -15.54 16 24 H 0.12 2.37 8.06 -2.91 -0.02 2.35 16 25 H 0.10 2.45 7.84 -2.91 -0.02 2.43 16 26 H 0.11 2.98 7.83 -2.91 -0.02 2.96 16 27 H 0.08 2.69 7.72 -2.39 -0.02 2.68 16 28 H 0.10 2.73 6.44 -2.39 -0.02 2.71 16 29 H 0.02 1.20 8.07 -2.39 -0.02 1.18 16 30 H 0.00 -0.20 7.42 -2.38 -0.02 -0.21 16 31 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 32 H 0.11 2.98 7.40 -2.39 -0.02 2.96 16 33 H 0.11 2.97 7.77 -2.39 -0.02 2.95 16 34 H 0.08 2.77 8.10 -2.39 -0.02 2.75 16 35 H 0.08 2.82 8.10 -2.39 -0.02 2.80 16 36 H 0.20 1.45 8.06 -2.91 -0.02 1.42 16 37 H 0.19 0.36 8.06 -2.91 -0.02 0.34 16 38 H 0.20 1.61 8.06 -2.91 -0.02 1.58 16 Total: -1.00 -80.23 334.10 4.29 -75.94 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 1.04 Total: 11.57 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: 6.90 Total: 12.63 kcal Atomic # 7 Polarization: -110.45 SS G_CDS: -5.62 Total: -116.07 kcal Atomic # 8 Polarization: -31.78 SS G_CDS: -0.05 Total: -31.83 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -80.23 4.29 -75.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359392600.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.299 kcal (2) G-P(sol) polarization free energy of solvation -80.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds