Wall clock time and date at job start Mon Mar 30 2020 02:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 114.00213 * 2 1 4 4 C 1.52997 * 109.47249 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47181 * 64.99955 * 4 3 2 6 6 C 1.36934 * 120.00293 * 264.42941 * 5 4 3 7 7 H 1.07993 * 120.00156 * 146.16106 * 6 5 4 8 8 C 1.38820 * 119.99209 * 326.16027 * 6 5 4 9 9 N 1.31611 * 120.00433 * 337.62664 * 8 6 5 10 10 Si 1.86803 * 119.99572 * 157.63662 * 8 6 5 11 11 H 1.48502 * 109.47071 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47229 * 119.99572 * 10 8 6 13 13 H 1.48500 * 109.47004 * 239.99621 * 10 8 6 14 14 C 1.46498 * 119.99825 * 84.42418 * 5 4 3 15 15 C 1.50697 * 109.47178 * 90.00146 * 14 5 4 16 16 C 1.39683 * 119.09486 * 270.02172 * 15 14 5 17 17 C 1.35648 * 121.72816 * 179.97438 * 16 15 14 18 18 C 1.41125 * 119.53690 * 0.03529 * 17 16 15 19 19 C 1.38249 * 134.81914 * 180.02562 * 18 17 16 20 20 N 1.33990 * 107.91008 * 179.97438 * 19 18 17 21 21 H 0.97002 * 125.02342 * 179.97438 * 20 19 18 22 22 N 1.39962 * 109.95421 * 0.02562 * 20 19 18 23 23 C 1.32062 * 108.95844 * 359.97438 * 22 20 19 24 24 C 1.35640 * 119.09117 * 89.99652 * 15 14 5 25 25 H 1.08997 * 109.46927 * 60.00175 * 1 2 3 26 26 H 1.09003 * 109.46974 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47230 * 299.99620 * 1 2 3 28 28 H 1.08997 * 109.46997 * 59.99681 * 3 2 1 29 29 H 1.08997 * 109.47116 * 300.00051 * 3 2 1 30 30 H 1.08993 * 109.47434 * 304.99733 * 4 3 2 31 31 H 1.09004 * 109.46932 * 184.99742 * 4 3 2 32 32 H 0.97003 * 120.00031 * 179.97438 * 9 8 6 33 33 H 1.09005 * 109.47758 * 330.00153 * 14 5 4 34 34 H 1.09007 * 109.47366 * 210.00404 * 14 5 4 35 35 H 1.08001 * 119.13186 * 359.97171 * 16 15 14 36 36 H 1.08004 * 120.23652 * 180.02562 * 17 16 15 37 37 H 1.08006 * 126.04412 * 359.95093 * 19 18 17 38 38 H 1.08000 * 120.20356 * 0.05098 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.2077 -0.7849 -1.3020 7 1 3.9968 -1.3349 -2.2072 8 6 4.7130 -1.4450 -0.1903 9 7 5.3727 -0.7742 0.7300 10 14 4.4568 -3.2857 -0.0007 11 1 3.6890 -3.8009 -1.1628 12 1 5.7757 -3.9651 0.0623 13 1 3.7015 -3.5541 1.2494 14 6 4.1707 1.3862 -2.4477 15 6 5.5917 1.8862 -2.4888 16 6 5.9011 3.1040 -1.8785 17 6 7.1620 3.6040 -1.8829 18 6 8.1945 2.8821 -2.5189 19 6 9.5488 3.0832 -2.7108 20 7 10.0265 2.0392 -3.4016 21 1 10.9511 1.9270 -3.6725 22 7 8.9939 1.1349 -3.6756 23 6 7.8692 1.5998 -3.1628 24 6 6.5351 1.1410 -3.1168 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6886 1.8463 0.8899 29 1 1.6886 1.8463 -0.8900 30 1 3.8508 0.5685 0.8427 31 1 3.9784 2.1765 0.0902 32 1 5.7255 -1.2355 1.5070 33 1 3.4875 2.2351 -2.4201 34 1 3.9703 0.7874 -3.3363 35 1 5.1157 3.6620 -1.3905 36 1 7.3744 4.5481 -1.4032 37 1 10.1205 3.9319 -2.3654 38 1 6.2669 0.2032 -3.5805 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453599980.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:03 Heat of formation + Delta-G solvation = 76.151517 kcal Electronic energy + Delta-G solvation = -21243.831741 eV Core-core repulsion = 18089.119806 eV Total energy + Delta-G solvation = -3154.711934 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.69943 -37.52769 -36.80511 -34.87464 -31.73032 -31.49520 -30.38695 -28.63902 -28.08783 -25.88973 -25.63262 -23.31127 -22.61847 -20.93662 -20.13070 -19.83163 -17.61347 -16.67666 -16.15297 -15.66489 -15.11818 -14.95293 -14.49786 -14.35663 -14.04992 -13.86469 -13.48206 -13.32443 -13.17162 -12.45836 -11.83646 -11.64332 -11.30449 -11.18054 -11.06682 -10.86190 -10.76904 -10.64229 -10.46130 -10.04560 -9.90080 -9.77680 -9.70793 -9.64204 -8.81942 -8.36128 -8.00221 -7.03292 -6.53766 -5.68399 -3.15186 1.17613 2.46663 2.98729 3.10038 3.49037 3.56029 3.59634 4.47275 4.66300 4.70923 4.78420 5.01704 5.46353 5.52812 5.63294 5.70939 5.77128 5.82220 5.83372 5.96007 6.07992 6.15396 6.27219 6.29674 6.32180 6.38995 6.58717 6.78033 6.80456 6.88209 7.07111 7.15979 7.44981 7.53947 7.60098 7.73253 7.92529 8.09105 8.12750 8.60877 9.26691 9.91063 10.44279 11.33744 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.019041 B = 0.005863 C = 0.004897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.189136 B = 4774.828659 C = 5716.479985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.357 6.357 3 C 0.046 3.954 4 C 0.142 3.858 5 N -0.562 5.562 6 C -0.233 4.233 7 H 0.062 0.938 8 C 0.015 3.985 9 N -0.885 5.885 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.295 1.295 13 H -0.289 1.289 14 C 0.172 3.828 15 C -0.043 4.043 16 C -0.117 4.117 17 C -0.073 4.073 18 C -0.202 4.202 19 C 0.060 3.940 20 N -0.440 5.440 21 H 0.436 0.564 22 N -0.320 5.320 23 C 0.119 3.881 24 C -0.097 4.097 25 H 0.029 0.971 26 H 0.074 0.926 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.028 0.972 30 H 0.108 0.892 31 H 0.040 0.960 32 H 0.252 0.748 33 H 0.045 0.955 34 H 0.055 0.945 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.178 0.822 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.597 10.200 -4.054 11.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.275 6.275 3 C -0.033 4.033 4 C 0.016 3.984 5 N -0.280 5.280 6 C -0.363 4.363 7 H 0.080 0.920 8 C -0.185 4.185 9 N -0.527 5.527 10 Si 0.728 3.272 11 H -0.201 1.201 12 H -0.222 1.222 13 H -0.215 1.215 14 C 0.046 3.954 15 C -0.051 4.051 16 C -0.137 4.137 17 C -0.093 4.093 18 C -0.212 4.212 19 C -0.095 4.095 20 N -0.140 5.140 21 H 0.279 0.721 22 N -0.149 5.149 23 C -0.034 4.034 24 C -0.120 4.120 25 H 0.047 0.953 26 H 0.093 0.907 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.046 0.954 30 H 0.126 0.874 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.195 0.805 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.294 8.960 -4.570 10.316 hybrid contribution 0.034 -0.042 0.768 0.770 sum 2.328 8.917 -3.802 9.969 Atomic orbital electron populations 1.22631 0.84218 1.01477 0.98417 1.88202 1.16592 1.27834 1.94834 1.23418 0.98894 0.84060 0.96918 1.21070 0.87201 0.97133 0.93042 1.43947 1.74017 1.03903 1.06158 1.19012 1.35513 0.82232 0.99565 0.92000 1.25013 0.96655 0.97683 0.99138 1.69989 1.35387 1.35235 1.12121 0.86297 0.77113 0.85882 0.77864 1.20142 1.22194 1.21546 1.20156 0.88841 0.94055 0.92319 1.20503 0.99469 0.92286 0.92830 1.20451 0.96030 0.96483 1.00760 1.20029 0.91688 0.98603 0.99012 1.19610 0.92983 0.99059 1.09589 1.22471 0.94729 0.93793 0.98539 1.46198 1.11180 1.15497 1.41158 0.72135 1.77630 0.95015 1.13382 1.28872 1.21076 0.93688 0.93185 0.95489 1.19588 0.87682 1.00385 1.04340 0.95251 0.90745 0.95554 0.95623 0.95371 0.87409 0.94170 0.93818 0.93687 0.92675 0.86987 0.86919 0.80460 0.85996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.36 -7.76 10.44 -35.23 -0.37 -8.13 16 3 C 0.05 0.92 6.28 37.16 0.23 1.15 16 4 C 0.14 3.26 5.63 -4.04 -0.02 3.24 16 5 N -0.56 -13.59 2.39 -174.61 -0.42 -14.01 16 6 C -0.23 -6.35 9.28 -15.06 -0.14 -6.49 16 7 H 0.06 1.71 7.92 -52.49 -0.42 1.29 16 8 C 0.02 0.42 4.91 -17.43 -0.09 0.34 16 9 N -0.88 -25.77 11.34 55.49 0.63 -25.14 16 10 Si 0.90 22.64 29.61 -169.99 -5.03 17.60 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 13 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 14 C 0.17 3.55 5.76 -5.20 -0.03 3.52 16 15 C -0.04 -0.87 5.42 -105.01 -0.57 -1.44 16 16 C -0.12 -2.14 9.51 -39.97 -0.38 -2.52 16 17 C -0.07 -1.22 10.09 -39.41 -0.40 -1.62 16 18 C -0.20 -3.56 6.33 -105.19 -0.67 -4.22 16 19 C 0.06 0.81 12.07 -16.61 -0.20 0.61 16 20 N -0.44 -6.13 7.18 30.84 0.22 -5.90 16 21 H 0.44 4.08 8.96 -182.70 -1.64 2.44 16 22 N -0.32 -6.16 12.70 33.26 0.42 -5.74 16 23 C 0.12 2.44 7.49 -83.05 -0.62 1.82 16 24 C -0.10 -2.08 9.65 -39.41 -0.38 -2.47 16 25 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.03 0.52 8.12 -51.93 -0.42 0.10 16 30 H 0.11 2.89 5.34 -51.93 -0.28 2.61 16 31 H 0.04 0.86 8.06 -51.93 -0.42 0.44 16 32 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.04 0.82 7.98 -51.93 -0.41 0.40 16 34 H 0.05 1.12 7.96 -51.93 -0.41 0.71 16 35 H 0.11 1.82 8.00 -52.49 -0.42 1.40 16 36 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 37 H 0.18 1.47 8.06 -52.48 -0.42 1.05 16 38 H 0.12 2.68 8.06 -52.49 -0.42 2.26 16 LS Contribution 325.84 15.07 4.91 4.91 Total: -1.00 -33.81 325.84 -8.30 -42.10 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -6.51 Total: 0.79 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: -2.15 Total: -6.48 kcal Atomic # 7 Polarization: -51.65 SS G_CDS: 0.86 Total: -50.80 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: -0.37 Total: -8.13 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.03 Total: 17.60 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.81 -8.30 -42.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453599980.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.256 kcal (2) G-P(sol) polarization free energy of solvation -33.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds