Wall clock time and date at job start Mon Mar 30 2020 02:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 114.00213 * 2 1 4 4 C 1.52997 * 109.47249 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47181 * 64.99955 * 4 3 2 6 6 C 1.36934 * 120.00293 * 264.42941 * 5 4 3 7 7 H 1.07993 * 120.00156 * 146.16106 * 6 5 4 8 8 C 1.38820 * 119.99209 * 326.16027 * 6 5 4 9 9 N 1.31611 * 120.00433 * 337.62664 * 8 6 5 10 10 Si 1.86803 * 119.99572 * 157.63662 * 8 6 5 11 11 H 1.48502 * 109.47071 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47229 * 119.99572 * 10 8 6 13 13 H 1.48500 * 109.47004 * 239.99621 * 10 8 6 14 14 C 1.46498 * 119.99825 * 84.42418 * 5 4 3 15 15 C 1.50697 * 109.47178 * 90.00146 * 14 5 4 16 16 C 1.39683 * 119.09486 * 270.02172 * 15 14 5 17 17 C 1.35648 * 121.72816 * 179.97438 * 16 15 14 18 18 C 1.41125 * 119.53690 * 0.03529 * 17 16 15 19 19 C 1.38249 * 134.81914 * 180.02562 * 18 17 16 20 20 N 1.33990 * 107.91008 * 179.97438 * 19 18 17 21 21 H 0.97002 * 125.02342 * 179.97438 * 20 19 18 22 22 N 1.39962 * 109.95421 * 0.02562 * 20 19 18 23 23 C 1.32062 * 108.95844 * 359.97438 * 22 20 19 24 24 C 1.35640 * 119.09117 * 89.99652 * 15 14 5 25 25 H 1.08997 * 109.46927 * 60.00175 * 1 2 3 26 26 H 1.09003 * 109.46974 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47230 * 299.99620 * 1 2 3 28 28 H 1.08997 * 109.46997 * 59.99681 * 3 2 1 29 29 H 1.08997 * 109.47116 * 300.00051 * 3 2 1 30 30 H 1.08993 * 109.47434 * 304.99733 * 4 3 2 31 31 H 1.09004 * 109.46932 * 184.99742 * 4 3 2 32 32 H 0.97003 * 120.00031 * 179.97438 * 9 8 6 33 33 H 1.09005 * 109.47758 * 330.00153 * 14 5 4 34 34 H 1.09007 * 109.47366 * 210.00404 * 14 5 4 35 35 H 1.08001 * 119.13186 * 359.97171 * 16 15 14 36 36 H 1.08004 * 120.23652 * 180.02562 * 17 16 15 37 37 H 1.08006 * 126.04412 * 359.95093 * 19 18 17 38 38 H 1.08000 * 120.20356 * 0.05098 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.2077 -0.7849 -1.3020 7 1 3.9968 -1.3349 -2.2072 8 6 4.7130 -1.4450 -0.1903 9 7 5.3727 -0.7742 0.7300 10 14 4.4568 -3.2857 -0.0007 11 1 3.6890 -3.8009 -1.1628 12 1 5.7757 -3.9651 0.0623 13 1 3.7015 -3.5541 1.2494 14 6 4.1707 1.3862 -2.4477 15 6 5.5917 1.8862 -2.4888 16 6 5.9011 3.1040 -1.8785 17 6 7.1620 3.6040 -1.8829 18 6 8.1945 2.8821 -2.5189 19 6 9.5488 3.0832 -2.7108 20 7 10.0265 2.0392 -3.4016 21 1 10.9511 1.9270 -3.6725 22 7 8.9939 1.1349 -3.6756 23 6 7.8692 1.5998 -3.1628 24 6 6.5351 1.1410 -3.1168 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6886 1.8463 0.8899 29 1 1.6886 1.8463 -0.8900 30 1 3.8508 0.5685 0.8427 31 1 3.9784 2.1765 0.0902 32 1 5.7255 -1.2355 1.5070 33 1 3.4875 2.2351 -2.4201 34 1 3.9703 0.7874 -3.3363 35 1 5.1157 3.6620 -1.3905 36 1 7.3744 4.5481 -1.4032 37 1 10.1205 3.9319 -2.3654 38 1 6.2669 0.2032 -3.5805 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453599980.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:03 Heat of formation + Delta-G solvation = 53.259849 kcal Electronic energy + Delta-G solvation = -21244.824398 eV Core-core repulsion = 18089.119806 eV Total energy + Delta-G solvation = -3155.704592 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.99242 -39.10231 -38.27003 -36.57970 -33.52298 -32.92177 -31.95492 -30.19555 -29.48708 -27.63360 -27.03483 -25.04508 -24.05885 -22.43337 -21.54559 -21.41502 -18.83273 -18.60795 -17.57045 -17.18613 -16.73690 -16.47350 -16.17568 -15.71264 -15.61463 -15.37784 -15.22404 -14.84004 -14.67451 -13.90611 -13.42495 -13.29175 -12.81582 -12.77287 -12.67702 -12.57215 -12.35644 -12.30741 -12.13817 -11.82790 -11.80850 -11.45791 -11.12924 -11.07211 -10.43507 -10.28869 -9.39681 -8.53071 -8.37539 -7.74828 -5.24815 -0.09973 1.05703 1.44530 1.47489 1.56377 1.66476 2.02920 2.57791 3.06322 3.26559 3.38965 3.50487 3.89724 3.91795 4.33063 4.36115 4.46824 4.49312 4.58829 4.60660 4.68222 4.79379 4.81533 4.84207 4.87223 4.92049 5.02647 5.07260 5.16842 5.44594 5.66598 5.73813 5.75279 5.89120 6.07542 6.20329 6.44912 6.49286 6.71390 6.78131 7.26627 7.96097 8.43665 9.23322 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.019041 B = 0.005863 C = 0.004897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.189136 B = 4774.828659 C = 5716.479985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.402 6.402 3 C 0.054 3.946 4 C 0.142 3.858 5 N -0.575 5.575 6 C -0.230 4.230 7 H 0.047 0.953 8 C -0.030 4.030 9 N -0.913 5.913 10 Si 0.943 3.057 11 H -0.273 1.273 12 H -0.300 1.300 13 H -0.290 1.290 14 C 0.173 3.827 15 C -0.039 4.039 16 C -0.156 4.156 17 C -0.043 4.043 18 C -0.243 4.243 19 C 0.112 3.888 20 N -0.421 5.421 21 H 0.457 0.543 22 N -0.370 5.370 23 C 0.088 3.912 24 C -0.136 4.136 25 H 0.044 0.956 26 H 0.081 0.919 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.044 0.956 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.245 0.755 33 H 0.073 0.927 34 H 0.045 0.955 35 H 0.131 0.869 36 H 0.158 0.842 37 H 0.245 0.755 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.597 13.224 -3.814 14.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.321 6.321 3 C -0.024 4.024 4 C 0.016 3.984 5 N -0.294 5.294 6 C -0.361 4.361 7 H 0.064 0.936 8 C -0.227 4.227 9 N -0.558 5.558 10 Si 0.773 3.227 11 H -0.197 1.197 12 H -0.228 1.228 13 H -0.217 1.217 14 C 0.048 3.952 15 C -0.046 4.046 16 C -0.176 4.176 17 C -0.063 4.063 18 C -0.253 4.253 19 C -0.046 4.046 20 N -0.122 5.122 21 H 0.304 0.696 22 N -0.200 5.200 23 C -0.064 4.064 24 C -0.159 4.159 25 H 0.063 0.937 26 H 0.099 0.901 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.149 0.851 36 H 0.176 0.824 37 H 0.261 0.739 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.293 11.974 -4.373 13.166 hybrid contribution -0.111 -0.811 0.567 0.996 sum 3.182 11.163 -3.806 12.215 Atomic orbital electron populations 1.22818 0.81518 1.02589 1.00116 1.88125 1.19690 1.29023 1.95220 1.23242 0.96535 0.83908 0.98739 1.20989 0.89582 0.96672 0.91183 1.43962 1.74809 1.03353 1.07246 1.19031 1.34191 0.84145 0.98766 0.93551 1.25472 0.97459 1.00273 0.99507 1.70105 1.37242 1.35888 1.12551 0.85580 0.76535 0.82957 0.77591 1.19728 1.22774 1.21707 1.20191 0.90109 0.94378 0.90544 1.20515 0.98423 0.93304 0.92371 1.20610 0.97834 0.96303 1.02833 1.20527 0.90558 0.99187 0.96039 1.20104 0.95320 0.98513 1.11352 1.23453 0.93297 0.93734 0.94127 1.46288 1.11544 1.14651 1.39757 0.69571 1.77552 0.95881 1.15714 1.30899 1.21156 0.93461 0.95100 0.96644 1.19534 0.89563 1.00169 1.06643 0.93729 0.90086 0.93493 0.93219 0.93774 0.91217 0.92873 0.94568 0.90833 0.93686 0.85079 0.82423 0.73907 0.88985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 11.01 113.37 1.25 2.06 16 2 O -0.40 -17.31 10.44 -148.98 -1.56 -18.87 16 3 C 0.05 2.09 6.28 71.98 0.45 2.54 16 4 C 0.14 6.55 5.63 86.38 0.49 7.04 16 5 N -0.57 -28.45 2.39 -706.34 -1.69 -30.14 16 6 C -0.23 -13.06 9.28 84.04 0.78 -12.29 16 7 H 0.05 2.71 7.92 -2.91 -0.02 2.68 16 8 C -0.03 -1.78 4.91 84.87 0.42 -1.36 16 9 N -0.91 -55.18 11.34 21.65 0.25 -54.93 16 10 Si 0.94 48.25 29.61 68.60 2.03 50.28 16 11 H -0.27 -13.55 7.11 99.48 0.71 -12.84 16 12 H -0.30 -15.43 7.11 99.48 0.71 -14.73 16 13 H -0.29 -14.75 7.11 99.48 0.71 -14.04 16 14 C 0.17 7.29 5.76 85.63 0.49 7.78 16 15 C -0.04 -1.61 5.42 -20.12 -0.11 -1.72 16 16 C -0.16 -5.46 9.51 22.02 0.21 -5.25 16 17 C -0.04 -1.29 10.09 22.38 0.23 -1.07 16 18 C -0.24 -7.86 6.33 -20.23 -0.13 -7.99 16 19 C 0.11 2.42 12.07 84.37 1.02 3.44 16 20 N -0.42 -10.37 7.18 -56.34 -0.40 -10.77 16 21 H 0.46 6.83 8.96 -213.41 -1.91 4.92 16 22 N -0.37 -14.22 12.70 -48.70 -0.62 -14.84 16 23 C 0.09 3.66 7.49 42.16 0.32 3.98 16 24 C -0.14 -6.19 9.65 22.38 0.22 -5.97 16 25 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.04 1.54 8.12 -2.39 -0.02 1.52 16 30 H 0.07 3.84 5.34 -2.39 -0.01 3.83 16 31 H 0.05 2.24 8.06 -2.39 -0.02 2.22 16 32 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 33 H 0.07 2.62 7.98 -2.38 -0.02 2.60 16 34 H 0.04 1.93 7.96 -2.38 -0.02 1.91 16 35 H 0.13 3.96 8.00 -2.91 -0.02 3.93 16 36 H 0.16 3.25 8.06 -2.91 -0.02 3.22 16 37 H 0.24 1.95 8.06 -2.91 -0.02 1.93 16 38 H 0.09 4.50 8.06 -2.91 -0.02 4.48 16 Total: -1.00 -79.12 325.84 2.79 -76.33 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -0.85 Total: 11.76 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: 5.63 Total: -8.82 kcal Atomic # 7 Polarization: -108.22 SS G_CDS: -2.47 Total: -110.68 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -1.56 Total: -18.87 kcal Atomic # 14 Polarization: 48.25 SS G_CDS: 2.03 Total: 50.28 kcal Total: -79.12 2.79 -76.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453599980.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.593 kcal (2) G-P(sol) polarization free energy of solvation -79.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds