Wall clock time and date at job start Mon Mar 30 2020 01:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46922 * 141.12529 * 3 2 1 5 5 C 1.36941 * 119.99747 * 264.24447 * 4 3 2 6 6 H 1.07990 * 120.00026 * 196.84021 * 5 4 3 7 7 C 1.38813 * 119.99695 * 16.84062 * 5 4 3 8 8 N 1.31614 * 120.00386 * 22.18595 * 7 5 4 9 9 Si 1.86796 * 119.99703 * 202.18744 * 7 5 4 10 10 H 1.48503 * 109.47393 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47543 * 120.00127 * 9 7 5 12 12 H 1.48500 * 109.47195 * 240.00141 * 9 7 5 13 13 C 1.46491 * 120.00107 * 84.24885 * 4 3 2 14 14 C 1.50700 * 109.47028 * 269.99638 * 13 4 3 15 15 N 1.31134 * 126.55043 * 90.25431 * 14 13 4 16 16 C 1.34494 * 105.61420 * 180.12263 * 15 14 13 17 17 C 1.50701 * 126.28786 * 179.90598 * 16 15 14 18 18 C 1.54885 * 110.60119 * 123.02919 * 17 16 15 19 19 C 1.54891 * 102.74573 * 156.67458 * 18 17 16 20 20 C 1.54263 * 104.19626 * 322.05702 * 19 18 17 21 21 C 1.53872 * 106.60261 * 23.61385 * 20 19 18 22 22 N 1.29949 * 107.42376 * 359.63987 * 16 15 14 23 23 O 1.21296 * 110.25465 * 0.22599 * 22 16 15 24 24 H 4.40637 * 5.51498 * 180.02562 * 4 1 2 25 25 H 1.09000 * 109.47380 * 21.12396 * 3 2 1 26 26 H 1.09006 * 109.46822 * 261.11889 * 3 2 1 27 27 H 0.97003 * 120.00305 * 179.97438 * 8 7 5 28 28 H 1.09008 * 109.47263 * 150.00114 * 13 4 3 29 29 H 1.08999 * 109.47393 * 29.99891 * 13 4 3 30 30 H 1.08997 * 110.43313 * 0.41080 * 17 16 15 31 31 H 1.08997 * 110.75695 * 274.98959 * 18 17 16 32 32 H 1.09008 * 110.75659 * 38.36341 * 18 17 16 33 33 H 1.09004 * 110.48234 * 203.37844 * 19 18 17 34 34 H 1.08993 * 110.48459 * 80.74021 * 19 18 17 35 35 H 1.08998 * 110.03524 * 264.31992 * 20 19 18 36 36 H 1.09004 * 110.06806 * 142.91949 * 20 19 18 37 37 H 1.08999 * 110.03189 * 240.71581 * 21 20 19 38 38 H 1.08997 * 110.03570 * 119.28154 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.0762 -0.8669 5 6 3.4743 0.8075 -2.1658 6 1 4.0784 1.5089 -2.7219 7 6 3.0428 -0.3667 -2.7676 8 7 1.9895 -0.9994 -2.2961 9 14 3.9572 -1.0486 -4.2468 10 1 5.0974 -0.1567 -4.5784 11 1 4.4667 -2.4073 -3.9308 12 1 3.0344 -1.1237 -5.4078 13 6 3.2575 2.4391 -0.3442 14 6 1.9670 3.1833 -0.5717 15 7 0.9463 3.2457 0.2493 16 6 0.0300 4.0113 -0.3698 17 6 -1.3288 4.3840 0.1647 18 6 -1.4888 5.9236 0.2209 19 6 -3.0261 6.1090 0.1836 20 6 -3.5148 5.0205 -0.7943 21 6 -2.4357 3.9237 -0.8063 22 7 0.5340 4.3752 -1.5109 23 8 1.6460 3.9102 -1.6463 24 1 -1.0501 -0.0001 0.0003 25 1 3.0098 -0.9578 -0.3704 26 1 3.0092 0.1595 1.0154 27 1 1.6878 -1.8197 -2.7169 28 1 4.0691 2.9535 -0.8591 29 1 3.4714 2.4007 0.7239 30 1 -1.4820 3.9483 1.1520 31 1 -1.0741 6.3215 1.1470 32 1 -1.0220 6.3923 -0.6456 33 1 -3.2818 7.1004 -0.1904 34 1 -3.4534 5.9519 1.1739 35 1 -3.6311 5.4409 -1.7932 36 1 -4.4632 4.6075 -0.4506 37 1 -2.0282 3.8118 -1.8110 38 1 -2.8602 2.9786 -0.4676 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491775505.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:45 Heat of formation + Delta-G solvation = 119.424744 kcal Electronic energy + Delta-G solvation = -21444.948379 eV Core-core repulsion = 18292.112913 eV Total energy + Delta-G solvation = -3152.835466 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -46.26045 -39.29447 -38.20641 -36.27982 -34.17377 -33.47241 -32.49224 -29.93315 -29.73272 -28.66636 -27.90895 -24.73699 -24.33880 -22.97773 -21.39763 -20.62115 -19.43958 -18.87428 -18.47828 -18.21218 -17.06032 -16.67350 -16.38082 -15.73035 -15.58428 -15.39322 -14.60986 -14.44384 -14.36690 -13.66426 -13.44239 -13.23564 -13.18206 -12.81230 -12.71497 -12.49044 -12.24696 -12.16705 -12.08712 -12.04476 -11.96596 -11.84163 -11.63535 -11.39365 -10.89583 -10.86696 -10.59170 -10.31845 -9.22114 -7.93835 -5.38804 0.38359 1.42797 1.48445 1.52673 1.61425 2.19454 2.31655 2.52087 2.61437 2.81444 3.21994 3.28547 3.61157 3.70267 3.72904 3.84903 4.06401 4.30057 4.40561 4.44428 4.50193 4.53152 4.65290 4.72955 4.76496 4.84225 4.89174 5.00823 5.02064 5.14293 5.18346 5.26831 5.28882 5.29308 5.41921 5.57363 5.65895 6.15495 6.96436 7.35990 7.41487 7.65065 8.05249 9.06800 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.024525 B = 0.005062 C = 0.004994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.407710 B = 5530.242743 C = 5605.940174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 C -0.117 4.117 3 C 0.265 3.735 4 N -0.570 5.570 5 C -0.281 4.281 6 H 0.091 0.909 7 C -0.038 4.038 8 N -0.909 5.909 9 Si 0.966 3.034 10 H -0.260 1.260 11 H -0.287 1.287 12 H -0.305 1.305 13 C 0.219 3.781 14 C 0.179 3.821 15 N -0.505 5.505 16 C 0.171 3.829 17 C -0.003 4.003 18 C -0.110 4.110 19 C -0.112 4.112 20 C -0.116 4.116 21 C -0.116 4.116 22 N -0.420 5.420 23 O 0.045 5.955 24 H 0.203 0.797 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.249 0.751 28 H 0.112 0.888 29 H 0.122 0.878 30 H 0.106 0.894 31 H 0.081 0.919 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.037 0.963 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.759 10.593 7.119 13.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.318 4.318 2 C -0.119 4.119 3 C 0.141 3.859 4 N -0.288 5.288 5 C -0.410 4.410 6 H 0.108 0.892 7 C -0.236 4.236 8 N -0.552 5.552 9 Si 0.794 3.206 10 H -0.184 1.184 11 H -0.213 1.213 12 H -0.233 1.233 13 C 0.088 3.912 14 C -0.045 4.045 15 N -0.239 5.239 16 C -0.102 4.102 17 C -0.023 4.023 18 C -0.148 4.148 19 C -0.149 4.149 20 C -0.154 4.154 21 C -0.155 4.155 22 N -0.135 5.135 23 O -0.006 6.006 24 H 0.220 0.780 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.059 0.941 28 H 0.130 0.870 29 H 0.140 0.860 30 H 0.124 0.876 31 H 0.100 0.900 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.105 0.895 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.056 0.944 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.352 10.831 6.838 13.882 hybrid contribution -0.102 -1.014 -1.387 1.721 sum -5.454 9.817 5.452 12.483 Atomic orbital electron populations 1.24623 0.96108 1.04342 1.06746 1.24449 0.95927 0.96790 0.94771 1.18030 0.82410 0.92757 0.92734 1.44800 1.72109 1.01663 1.10265 1.19732 1.26188 1.04969 0.90135 0.89157 1.25704 0.96698 1.00233 1.00917 1.70327 1.22528 1.18823 1.43535 0.85245 0.78395 0.78405 0.78524 1.18368 1.21298 1.23348 1.20454 0.86004 0.82640 1.02085 1.31818 1.01715 0.90295 0.80623 1.71867 1.01378 1.19691 1.30994 1.26205 1.00171 0.95260 0.88604 1.20548 0.83693 0.98425 0.99620 1.22558 0.98470 0.91574 1.02234 1.22335 0.92862 0.99294 1.00443 1.22110 0.97800 0.95067 1.00407 1.22196 0.95496 1.00143 0.97656 1.74389 0.95919 1.22113 1.21109 1.85215 1.24870 1.49065 1.41409 0.77973 0.90300 0.90334 0.94144 0.86984 0.86024 0.87590 0.90002 0.92529 0.89728 0.89482 0.91689 0.89658 0.94409 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -14.16 19.25 74.32 1.43 -12.73 16 2 C -0.12 -5.67 11.29 31.12 0.35 -5.32 16 3 C 0.27 11.88 5.45 84.57 0.46 12.34 16 4 N -0.57 -25.55 2.49 -716.91 -1.79 -27.34 16 5 C -0.28 -13.99 9.66 84.03 0.81 -13.18 16 6 H 0.09 4.31 7.90 -2.92 -0.02 4.29 16 7 C -0.04 -1.97 4.85 84.86 0.41 -1.56 16 8 N -0.91 -50.89 9.50 21.65 0.21 -50.68 16 9 Si 0.97 42.76 29.61 68.60 2.03 44.79 16 10 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 11 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 12 H -0.31 -14.18 7.11 99.48 0.71 -13.47 16 13 C 0.22 7.90 6.32 85.63 0.54 8.44 16 14 C 0.18 7.36 7.78 88.38 0.69 8.05 16 15 N -0.50 -20.79 11.55 -303.17 -3.50 -24.29 16 16 C 0.17 6.65 6.74 138.46 0.93 7.58 16 17 C 0.00 -0.08 3.39 -10.46 -0.04 -0.12 16 18 C -0.11 -2.60 6.32 31.88 0.20 -2.40 16 19 C -0.11 -1.95 6.83 31.67 0.22 -1.74 16 20 C -0.12 -2.35 6.80 31.32 0.21 -2.14 16 21 C -0.12 -3.29 6.36 31.32 0.20 -3.10 16 22 N -0.42 -17.81 11.84 -60.31 -0.71 -18.52 16 23 O 0.04 1.97 11.31 74.78 0.85 2.82 16 24 H 0.20 8.39 7.80 -4.41 -0.03 8.35 16 25 H 0.08 3.89 6.42 -2.39 -0.02 3.87 16 26 H 0.08 2.92 7.98 -2.38 -0.02 2.90 16 27 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16 28 H 0.11 3.48 8.03 -2.38 -0.02 3.47 16 29 H 0.12 3.63 7.95 -2.39 -0.02 3.61 16 30 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 31 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.06 1.53 7.95 -2.38 -0.02 1.52 16 33 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.04 1.30 7.68 -2.39 -0.02 1.28 16 38 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -65.06 325.66 4.55 -60.51 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 1.05 Total: 18.58 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: 6.42 Total: -5.86 kcal Atomic # 7 Polarization: -115.04 SS G_CDS: -5.80 Total: -120.84 kcal Atomic # 8 Polarization: 1.97 SS G_CDS: 0.85 Total: 2.82 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -65.06 4.55 -60.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491775505.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.932 kcal (2) G-P(sol) polarization free energy of solvation -65.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds