Wall clock time and date at job start Mon Mar 30 2020 02:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46905 * 110.99600 * 2 1 4 4 C 1.46901 * 110.99871 * 123.95254 * 2 1 3 5 5 C 1.50696 * 109.47033 * 170.00399 * 4 2 1 6 6 C 1.33027 * 119.99878 * 128.58121 * 5 4 2 7 7 C 1.47054 * 120.00046 * 16.01335 * 6 5 4 8 8 O 1.21609 * 120.00126 * 7.07653 * 7 6 5 9 9 N 1.34775 * 119.99929 * 187.07650 * 7 6 5 10 10 C 1.39365 * 120.00296 * 174.95432 * 9 7 6 11 11 C 1.38628 * 119.58633 * 185.42333 * 10 9 7 12 12 C 1.40797 * 118.79138 * 179.77566 * 11 10 9 13 13 C 1.41543 * 120.99386 * 180.23335 * 12 11 10 14 14 H 1.07994 * 120.00334 * 210.82716 * 13 12 11 15 15 C 1.40037 * 119.99567 * 30.83746 * 13 12 11 16 16 N 1.30736 * 120.00342 * 7.38720 * 15 13 12 17 17 Si 1.86810 * 119.99566 * 187.39324 * 15 13 12 18 18 H 1.48492 * 109.47020 * 89.99923 * 17 15 13 19 19 H 1.48502 * 109.46576 * 209.99552 * 17 15 13 20 20 H 1.48498 * 109.47266 * 329.99436 * 17 15 13 21 21 C 1.41183 * 118.01318 * 0.48412 * 12 11 10 22 22 C 1.37583 * 119.01552 * 359.75013 * 21 12 11 23 23 N 1.32083 * 121.11647 * 0.02562 * 22 21 12 24 24 H 1.09003 * 109.47091 * 56.04870 * 1 2 3 25 25 H 1.09001 * 109.46846 * 176.04337 * 1 2 3 26 26 H 1.08992 * 109.47726 * 296.04532 * 1 2 3 27 27 H 1.09005 * 109.46942 * 60.00227 * 3 2 1 28 28 H 1.08994 * 109.47022 * 179.97438 * 3 2 1 29 29 H 1.08992 * 109.47128 * 299.99784 * 3 2 1 30 30 H 1.09002 * 109.46941 * 290.00531 * 4 2 1 31 31 H 1.08996 * 109.47001 * 50.00471 * 4 2 1 32 32 H 1.07997 * 120.00308 * 308.58903 * 5 4 2 33 33 H 1.08001 * 119.99999 * 196.00912 * 6 5 4 34 34 H 0.97006 * 120.00020 * 354.94925 * 9 7 6 35 35 H 1.08001 * 120.59852 * 0.02562 * 11 10 9 36 36 H 0.96999 * 120.00027 * 179.97438 * 16 15 13 37 37 H 1.07992 * 120.49033 * 179.77436 * 21 12 11 38 38 H 1.08003 * 119.44379 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.4817 -0.9524 0.9729 6 6 4.3062 -0.6336 1.9670 7 6 3.7790 -0.4396 3.3260 8 8 2.6151 -0.6950 3.5689 9 7 4.5857 0.0212 4.3024 10 6 4.0627 0.3049 5.5626 11 6 4.8741 0.8839 6.5260 12 6 4.3272 1.1678 7.7919 13 6 5.1121 1.7631 8.8082 14 1 4.9106 1.5415 9.8458 15 6 6.1499 2.6397 8.4682 16 7 6.3031 3.0214 7.2273 17 14 7.3157 3.2634 9.7880 18 1 8.4704 2.3374 9.9063 19 1 7.8024 4.6170 9.4189 20 1 6.6008 3.3319 11.0878 21 6 2.9738 0.8360 8.0191 22 6 2.2485 0.2587 7.0024 23 7 2.7977 0.0125 5.8267 24 1 -0.3633 0.5740 -0.8525 25 1 -0.3633 -1.0252 -0.0709 26 1 -0.3634 0.4512 0.9232 27 1 1.6459 1.8948 0.8901 28 1 3.0849 1.3425 0.0005 29 1 1.6459 1.8948 -0.8899 30 1 1.7974 -0.2247 2.0628 31 1 1.5090 -1.7406 1.1756 32 1 3.8776 -1.3447 0.0479 33 1 5.3628 -0.5173 1.7760 34 1 5.5305 0.1553 4.1280 35 1 5.9060 1.1168 6.3080 36 1 7.0218 3.6288 6.9919 37 1 2.5147 1.0327 8.9765 38 1 1.2126 0.0024 7.1685 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492167711.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:46 Heat of formation + Delta-G solvation = 17.488628 kcal Electronic energy + Delta-G solvation = -20571.488259 eV Core-core repulsion = 17414.232511 eV Total energy + Delta-G solvation = -3157.255748 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.35211 -39.82700 -38.29950 -36.14001 -35.48024 -34.14999 -32.45870 -30.64400 -28.50057 -28.20356 -27.87545 -24.70143 -23.84839 -22.82085 -22.03008 -20.54224 -19.47874 -18.04648 -17.70878 -16.93647 -16.66457 -16.33804 -16.07672 -15.93732 -15.79522 -15.54281 -14.94170 -14.61860 -14.36708 -14.26693 -14.14900 -13.38971 -13.26675 -13.15999 -12.89002 -12.74372 -12.68484 -12.58914 -12.35123 -12.12773 -11.88959 -11.43925 -11.17834 -10.86289 -10.32460 -9.90101 -9.67911 -9.22388 -8.84263 -8.59469 -6.59435 0.25644 0.90329 0.99179 1.40989 1.53162 1.56674 2.20352 2.23229 2.34484 2.84134 3.07991 3.70892 3.73533 3.97319 4.21364 4.26859 4.33511 4.47332 4.59264 4.63059 4.71195 4.74756 4.82185 4.88364 4.94863 4.95987 4.97066 5.10037 5.22297 5.26352 5.43622 5.49002 5.65853 5.91809 5.98717 6.02771 6.15599 6.48633 6.60995 6.77772 6.83715 7.32384 7.80562 8.31243 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.028691 B = 0.003829 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.691744 B = 7311.780740 C = 7676.627392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.545 5.545 3 C 0.023 3.977 4 C 0.044 3.956 5 C -0.037 4.037 6 C -0.220 4.220 7 C 0.517 3.483 8 O -0.518 6.518 9 N -0.650 5.650 10 C 0.332 3.668 11 C -0.251 4.251 12 C 0.116 3.884 13 C -0.490 4.490 14 H 0.083 0.917 15 C 0.037 3.963 16 N -0.824 5.824 17 Si 0.990 3.010 18 H -0.260 1.260 19 H -0.268 1.268 20 H -0.260 1.260 21 C -0.293 4.293 22 C 0.110 3.890 23 N -0.572 5.572 24 H 0.086 0.914 25 H 0.076 0.924 26 H 0.011 0.989 27 H 0.004 0.996 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.165 0.835 33 H 0.168 0.832 34 H 0.423 0.577 35 H 0.124 0.876 36 H 0.290 0.710 37 H 0.116 0.884 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.014 -2.736 -12.234 12.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.270 5.270 3 C -0.125 4.125 4 C -0.082 4.082 5 C -0.057 4.057 6 C -0.242 4.242 7 C 0.308 3.692 8 O -0.394 6.394 9 N -0.296 5.296 10 C 0.105 3.895 11 C -0.276 4.276 12 C 0.108 3.892 13 C -0.521 4.521 14 H 0.101 0.899 15 C -0.179 4.179 16 N -0.450 5.450 17 Si 0.811 3.189 18 H -0.184 1.184 19 H -0.193 1.193 20 H -0.184 1.184 21 C -0.317 4.317 22 C -0.044 4.044 23 N -0.292 5.292 24 H 0.105 0.895 25 H 0.094 0.906 26 H 0.029 0.971 27 H 0.023 0.977 28 H 0.091 0.909 29 H 0.105 0.895 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.182 0.818 33 H 0.185 0.815 34 H 0.261 0.739 35 H 0.142 0.858 36 H 0.101 0.899 37 H 0.134 0.866 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.040 -3.398 -13.396 13.859 hybrid contribution 1.010 1.267 2.132 2.678 sum -0.029 -2.131 -11.264 11.464 Atomic orbital electron populations 1.22424 0.86488 1.02959 1.00520 1.62041 1.08647 1.13909 1.42360 1.22448 1.01086 0.88573 1.00414 1.21838 0.93839 0.99554 0.93016 1.23804 0.94021 0.89142 0.98697 1.22775 1.02901 1.08206 0.90271 1.19657 0.85735 0.77024 0.86742 1.90730 1.17744 1.48353 1.82608 1.43452 1.13163 1.64235 1.08756 1.18485 0.90384 0.94662 0.85945 1.21585 1.00571 1.09867 0.95583 1.18017 0.91276 0.87209 0.92729 1.19843 1.13639 1.24230 0.94400 0.89916 1.26794 0.97823 0.94591 0.98663 1.69782 1.28582 1.26310 1.20359 0.85071 0.77748 0.78019 0.78077 1.18420 1.19271 1.18361 1.22162 0.95456 1.12940 1.01130 1.22236 0.99176 0.94933 0.88067 1.67372 1.11698 1.27095 1.23039 0.89508 0.90566 0.97067 0.97743 0.90883 0.89463 0.92443 0.89895 0.81767 0.81501 0.73938 0.85844 0.89895 0.86561 0.83280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 9.57 127.69 1.22 1.74 16 2 N -0.55 -13.08 5.01 -953.48 -4.78 -17.86 16 3 C 0.02 0.53 9.43 127.69 1.20 1.73 16 4 C 0.04 1.23 4.55 85.56 0.39 1.62 16 5 C -0.04 -0.84 8.60 24.52 0.21 -0.63 16 6 C -0.22 -5.52 10.00 23.42 0.23 -5.28 16 7 C 0.52 19.34 7.50 86.56 0.65 19.99 16 8 O -0.52 -23.40 11.58 -4.06 -0.05 -23.44 16 9 N -0.65 -25.63 5.38 -311.98 -1.68 -27.31 16 10 C 0.33 16.40 7.41 132.79 0.98 17.39 16 11 C -0.25 -13.02 8.57 22.99 0.20 -12.83 16 12 C 0.12 6.25 5.56 -21.12 -0.12 6.13 16 13 C -0.49 -25.59 9.12 23.52 0.21 -25.38 16 14 H 0.08 4.14 7.86 -2.91 -0.02 4.11 16 15 C 0.04 1.77 5.33 85.29 0.45 2.23 16 16 N -0.82 -40.91 10.88 21.84 0.24 -40.67 16 17 Si 0.99 36.34 29.57 68.60 2.03 38.37 16 18 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 19 H -0.27 -9.38 7.11 99.48 0.71 -8.68 16 20 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 21 C -0.29 -14.70 9.90 22.84 0.23 -14.47 16 22 C 0.11 5.35 11.15 84.50 0.94 6.30 16 23 N -0.57 -29.67 7.85 -193.58 -1.52 -31.19 16 24 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.08 1.47 8.12 -2.39 -0.02 1.45 16 26 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 27 H 0.00 0.11 8.14 -2.38 -0.02 0.09 16 28 H 0.07 1.56 7.17 -2.39 -0.02 1.55 16 29 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.06 2.13 4.92 -6.36 -0.03 2.10 16 31 H 0.08 2.30 8.06 -2.39 -0.02 2.28 16 32 H 0.16 2.56 8.06 -2.91 -0.02 2.54 16 33 H 0.17 2.86 8.06 -2.91 -0.02 2.83 16 34 H 0.42 13.49 8.68 -92.70 -0.80 12.68 16 35 H 0.12 6.38 6.38 -2.91 -0.02 6.36 16 36 H 0.29 12.92 8.29 -92.71 -0.77 12.16 16 37 H 0.12 5.32 8.06 -2.91 -0.02 5.30 16 38 H 0.15 6.25 8.06 -2.91 -0.02 6.23 16 Total: -1.00 -67.71 322.55 1.30 -66.41 By element: Atomic # 1 Polarization: 36.91 SS G_CDS: 0.25 Total: 37.16 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: 6.81 Total: -1.46 kcal Atomic # 7 Polarization: -109.29 SS G_CDS: -7.74 Total: -117.03 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.05 Total: -23.44 kcal Atomic # 14 Polarization: 36.34 SS G_CDS: 2.03 Total: 38.37 kcal Total: -67.71 1.30 -66.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492167711.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.900 kcal (2) G-P(sol) polarization free energy of solvation -67.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds