Wall clock time and date at job start Mon Mar 30 2020 01:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40041 * 126.14924 * 2 1 4 4 C 1.30994 * 108.85685 * 180.25246 * 3 2 1 5 5 C 1.39172 * 108.83416 * 359.76477 * 4 3 2 6 6 C 1.36806 * 126.15657 * 179.84138 * 2 1 3 7 7 C 1.46436 * 126.51317 * 0.02562 * 6 2 1 8 8 C 1.35251 * 119.99562 * 56.56167 * 7 6 2 9 9 C 1.46149 * 119.99980 * 6.74507 * 8 7 6 10 10 O 1.21733 * 120.00696 * 5.90185 * 9 8 7 11 11 N 1.34785 * 119.99618 * 185.89759 * 9 8 7 12 12 C 1.46502 * 119.99634 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.46846 * 175.27253 * 12 11 9 14 14 C 1.50695 * 115.55299 * 56.57614 * 13 12 11 15 15 H 1.08003 * 120.00063 * 272.84922 * 14 13 12 16 16 C 1.37881 * 120.00332 * 92.84910 * 14 13 12 17 17 N 1.31513 * 119.99341 * 354.02155 * 16 14 13 18 18 Si 1.86794 * 120.00047 * 174.02306 * 16 14 13 19 19 H 1.48501 * 109.47319 * 60.00301 * 18 16 14 20 20 H 1.48507 * 109.47121 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47306 * 299.99881 * 18 16 14 22 22 C 1.53002 * 117.49546 * 270.90417 * 13 12 11 23 23 C 1.53001 * 117.49651 * 202.24764 * 13 12 11 24 24 H 1.09002 * 109.46464 * 273.35958 * 1 2 3 25 25 H 1.08993 * 109.46947 * 33.35843 * 1 2 3 26 26 H 1.09000 * 109.46474 * 153.36236 * 1 2 3 27 27 H 1.08009 * 125.58136 * 179.78269 * 4 3 2 28 28 H 1.07993 * 126.18381 * 180.02562 * 5 4 3 29 29 H 1.08000 * 120.00022 * 236.56304 * 7 6 2 30 30 H 1.08000 * 119.99715 * 186.74470 * 8 7 6 31 31 H 0.96995 * 120.00086 * 0.27593 * 11 9 8 32 32 H 1.09000 * 109.46978 * 295.26438 * 12 11 9 33 33 H 1.08997 * 109.47559 * 55.26905 * 12 11 9 34 34 H 0.97002 * 119.99408 * 185.00534 * 17 16 14 35 35 H 1.08998 * 117.50023 * 0.02562 * 22 13 12 36 36 H 1.09007 * 117.49320 * 145.01940 * 22 13 12 37 37 H 1.08998 * 117.49841 * 214.97443 * 23 13 12 38 38 H 1.08995 * 117.50341 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2911 1.1308 0.0000 4 6 3.5419 0.7414 -0.0055 5 6 3.5793 -0.6498 -0.0038 6 6 2.2722 -1.1046 0.0031 7 6 1.8360 -2.5025 0.0064 8 6 1.0188 -2.9581 -0.9702 9 6 0.6896 -2.1004 -2.1069 10 8 1.2336 -1.0185 -2.2308 11 7 -0.2163 -2.5075 -3.0181 12 6 -0.5458 -1.6481 -4.1579 13 6 -1.5028 -2.3880 -5.0946 14 6 -2.7814 -2.8766 -4.4642 15 1 -2.8112 -3.8428 -3.9825 16 6 -3.9133 -2.0901 -4.5023 17 7 -3.8486 -0.8677 -4.9831 18 14 -5.5384 -2.7609 -3.8712 19 1 -5.4012 -3.1228 -2.4375 20 1 -6.5931 -1.7265 -4.0223 21 1 -5.9130 -3.9669 -4.6525 22 6 -0.8857 -3.2488 -6.1988 23 6 -1.5658 -1.9234 -6.5510 24 1 -0.3632 0.0602 1.0260 25 1 -0.3633 0.8583 -0.5651 26 1 -0.3632 -0.9186 -0.4608 27 1 4.4030 1.3934 -0.0102 28 1 4.4678 -1.2637 -0.0068 29 1 2.1668 -3.1695 0.7887 30 1 0.6095 -3.9557 -0.9101 31 1 -0.6526 -3.3679 -2.9173 32 1 -1.0219 -0.7355 -3.7991 33 1 0.3666 -1.3940 -4.6972 34 1 -4.6263 -0.2893 -4.9435 35 1 0.2020 -3.2882 -6.2576 36 1 -1.4049 -4.1683 -6.4695 37 1 -2.5320 -1.9715 -7.0533 38 1 -0.9259 -1.0904 -6.8417 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493206175.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:39 Heat of formation + Delta-G solvation = 92.619547 kcal Electronic energy + Delta-G solvation = -21185.535364 eV Core-core repulsion = 18031.537537 eV Total energy + Delta-G solvation = -3153.997827 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.75451 -39.06372 -36.78645 -33.85425 -33.31751 -32.52960 -32.01773 -29.18338 -26.71359 -26.37851 -25.39749 -22.97518 -21.19755 -20.74099 -20.43514 -19.59839 -18.62043 -17.16590 -16.32724 -15.78172 -15.25824 -14.89117 -14.73848 -14.60287 -14.14256 -13.89949 -13.55648 -13.28721 -13.02588 -12.67387 -12.37047 -12.15551 -12.07479 -11.79571 -11.66189 -11.05526 -11.01000 -10.61219 -10.44819 -10.28465 -9.94709 -9.67368 -9.46744 -9.05551 -8.64131 -8.55024 -8.38655 -8.13224 -8.03249 -6.15245 -4.25442 0.98748 2.33174 2.88451 3.13163 3.19713 3.26953 3.27937 3.63911 3.82713 4.27709 4.64398 4.84674 5.08764 5.10656 5.30929 5.38373 5.39569 5.43342 5.75660 5.77847 5.87326 5.95849 6.02647 6.16667 6.28719 6.32864 6.42834 6.49198 6.67347 6.79432 6.95954 7.07152 7.19029 7.29707 7.32072 7.48112 7.71958 8.03814 8.20629 8.26181 8.75452 8.77415 9.41863 10.91889 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022394 B = 0.004818 C = 0.004542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.061048 B = 5810.492217 C = 6163.824219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.331 5.331 3 N -0.295 5.295 4 C 0.037 3.963 5 C -0.264 4.264 6 C 0.125 3.875 7 C -0.033 4.033 8 C -0.179 4.179 9 C 0.515 3.485 10 O -0.540 6.540 11 N -0.692 5.692 12 C 0.165 3.835 13 C 0.022 3.978 14 C -0.502 4.502 15 H 0.059 0.941 16 C 0.075 3.925 17 N -0.873 5.873 18 Si 0.890 3.110 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.276 1.276 22 C -0.212 4.212 23 C -0.140 4.140 24 H 0.067 0.933 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.176 0.824 28 H 0.142 0.858 29 H 0.148 0.852 30 H 0.139 0.861 31 H 0.403 0.597 32 H 0.065 0.935 33 H 0.039 0.961 34 H 0.263 0.737 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.063 -4.077 9.551 13.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.113 5.113 3 N -0.118 5.118 4 C -0.147 4.147 5 C -0.294 4.294 6 C -0.004 4.004 7 C -0.054 4.054 8 C -0.201 4.201 9 C 0.302 3.698 10 O -0.420 6.420 11 N -0.340 5.340 12 C 0.042 3.958 13 C 0.021 3.979 14 C -0.540 4.540 15 H 0.077 0.923 16 C -0.130 4.130 17 N -0.509 5.509 18 Si 0.718 3.282 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.201 1.201 22 C -0.250 4.250 23 C -0.178 4.178 24 H 0.085 0.915 25 H 0.107 0.893 26 H 0.102 0.898 27 H 0.193 0.807 28 H 0.160 0.840 29 H 0.166 0.834 30 H 0.157 0.843 31 H 0.238 0.762 32 H 0.083 0.917 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.335 -2.101 9.313 12.673 hybrid contribution -0.705 -1.480 0.136 1.645 sum 7.629 -3.581 9.449 12.662 Atomic orbital electron populations 1.21803 0.74572 1.05007 1.01982 1.48599 1.05976 1.02527 1.54189 1.77200 1.01847 1.08200 1.24556 1.23426 0.94956 0.94979 1.01295 1.21530 0.95124 0.94696 1.18026 1.19849 0.91054 0.88141 1.01338 1.21694 0.94525 0.91539 0.97668 1.23472 1.00231 1.01349 0.95089 1.18385 0.80861 0.86839 0.83692 1.90914 1.52504 1.22111 1.76519 1.45949 1.40273 1.22680 1.25102 1.20961 0.95902 0.93176 0.85768 1.19036 0.94445 0.97332 0.87042 1.20261 0.92531 1.03405 1.37806 0.92266 1.24992 0.98649 0.94903 0.94413 1.69982 1.30478 1.06364 1.44058 0.86698 0.83429 0.78797 0.79284 1.20233 1.21252 1.20142 1.23094 0.96981 0.95496 1.09389 1.22419 1.00235 0.94493 1.00642 0.91485 0.89304 0.89818 0.80691 0.84035 0.83416 0.84302 0.76239 0.91656 0.94232 0.92733 0.91793 0.90367 0.89483 0.91827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.65 10.23 59.85 0.61 2.26 16 2 N -0.33 -5.62 3.00 -64.06 -0.19 -5.81 16 3 N -0.29 -5.26 12.54 30.51 0.38 -4.88 16 4 C 0.04 0.55 11.96 -17.56 -0.21 0.34 16 5 C -0.26 -3.83 10.83 -39.18 -0.42 -4.25 16 6 C 0.12 1.90 4.71 -82.29 -0.39 1.51 16 7 C -0.03 -0.39 9.86 -37.35 -0.37 -0.76 16 8 C -0.18 -2.26 9.36 -37.47 -0.35 -2.61 16 9 C 0.52 8.96 5.83 -13.08 -0.08 8.88 16 10 O -0.54 -11.29 12.29 5.16 0.06 -11.22 16 11 N -0.69 -12.64 5.42 -61.78 -0.33 -12.98 16 12 C 0.17 3.60 5.55 -4.04 -0.02 3.57 16 13 C 0.02 0.51 1.65 -155.66 -0.26 0.25 16 14 C -0.50 -12.35 8.22 -34.44 -0.28 -12.63 16 15 H 0.06 1.41 7.82 -52.48 -0.41 1.00 16 16 C 0.08 1.91 5.36 -17.82 -0.10 1.82 16 17 N -0.87 -23.54 12.48 55.43 0.69 -22.84 16 18 Si 0.89 19.78 29.54 -169.99 -5.02 14.76 16 19 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 20 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 22 C -0.21 -4.38 9.93 -26.69 -0.27 -4.65 16 23 C -0.14 -3.18 9.01 -26.69 -0.24 -3.42 16 24 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 26 H 0.08 1.30 5.08 -51.93 -0.26 1.03 16 27 H 0.18 1.98 8.06 -52.48 -0.42 1.56 16 28 H 0.14 1.65 8.06 -52.49 -0.42 1.23 16 29 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 30 H 0.14 1.29 8.06 -52.49 -0.42 0.86 16 31 H 0.40 6.75 8.00 -40.82 -0.33 6.42 16 32 H 0.07 1.62 8.14 -51.93 -0.42 1.19 16 33 H 0.04 0.87 8.10 -51.93 -0.42 0.45 16 34 H 0.26 6.86 8.32 -40.82 -0.34 6.52 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.08 1.59 8.14 -51.92 -0.42 1.17 16 37 H 0.09 2.13 8.04 -51.93 -0.42 1.71 16 38 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 325.54 15.07 4.91 4.91 Total: -1.00 -31.03 325.54 -7.08 -38.10 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -5.20 Total: 9.65 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -2.37 Total: -9.69 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: 0.55 Total: -46.51 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.06 Total: -11.22 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.03 -7.08 -38.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493206175.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.724 kcal (2) G-P(sol) polarization free energy of solvation -31.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds