Wall clock time and date at job start Mon Mar 30 2020 01:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40041 * 126.14924 * 2 1 4 4 C 1.30994 * 108.85685 * 180.25246 * 3 2 1 5 5 C 1.39172 * 108.83416 * 359.76477 * 4 3 2 6 6 C 1.36806 * 126.15657 * 179.84138 * 2 1 3 7 7 C 1.46436 * 126.51317 * 0.02562 * 6 2 1 8 8 C 1.35251 * 119.99562 * 56.56167 * 7 6 2 9 9 C 1.46149 * 119.99980 * 6.74507 * 8 7 6 10 10 O 1.21733 * 120.00696 * 5.90185 * 9 8 7 11 11 N 1.34785 * 119.99618 * 185.89759 * 9 8 7 12 12 C 1.46502 * 119.99634 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.46846 * 175.27253 * 12 11 9 14 14 C 1.50695 * 115.55299 * 56.57614 * 13 12 11 15 15 H 1.08003 * 120.00063 * 272.84922 * 14 13 12 16 16 C 1.37881 * 120.00332 * 92.84910 * 14 13 12 17 17 N 1.31513 * 119.99341 * 354.02155 * 16 14 13 18 18 Si 1.86794 * 120.00047 * 174.02306 * 16 14 13 19 19 H 1.48501 * 109.47319 * 60.00301 * 18 16 14 20 20 H 1.48507 * 109.47121 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47306 * 299.99881 * 18 16 14 22 22 C 1.53002 * 117.49546 * 270.90417 * 13 12 11 23 23 C 1.53001 * 117.49651 * 202.24764 * 13 12 11 24 24 H 1.09002 * 109.46464 * 273.35958 * 1 2 3 25 25 H 1.08993 * 109.46947 * 33.35843 * 1 2 3 26 26 H 1.09000 * 109.46474 * 153.36236 * 1 2 3 27 27 H 1.08009 * 125.58136 * 179.78269 * 4 3 2 28 28 H 1.07993 * 126.18381 * 180.02562 * 5 4 3 29 29 H 1.08000 * 120.00022 * 236.56304 * 7 6 2 30 30 H 1.08000 * 119.99715 * 186.74470 * 8 7 6 31 31 H 0.96995 * 120.00086 * 0.27593 * 11 9 8 32 32 H 1.09000 * 109.46978 * 295.26438 * 12 11 9 33 33 H 1.08997 * 109.47559 * 55.26905 * 12 11 9 34 34 H 0.97002 * 119.99408 * 185.00534 * 17 16 14 35 35 H 1.08998 * 117.50023 * 0.02562 * 22 13 12 36 36 H 1.09007 * 117.49320 * 145.01940 * 22 13 12 37 37 H 1.08998 * 117.49841 * 214.97443 * 23 13 12 38 38 H 1.08995 * 117.50341 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2911 1.1308 0.0000 4 6 3.5419 0.7414 -0.0055 5 6 3.5793 -0.6498 -0.0038 6 6 2.2722 -1.1046 0.0031 7 6 1.8360 -2.5025 0.0064 8 6 1.0188 -2.9581 -0.9702 9 6 0.6896 -2.1004 -2.1069 10 8 1.2336 -1.0185 -2.2308 11 7 -0.2163 -2.5075 -3.0181 12 6 -0.5458 -1.6481 -4.1579 13 6 -1.5028 -2.3880 -5.0946 14 6 -2.7814 -2.8766 -4.4642 15 1 -2.8112 -3.8428 -3.9825 16 6 -3.9133 -2.0901 -4.5023 17 7 -3.8486 -0.8677 -4.9831 18 14 -5.5384 -2.7609 -3.8712 19 1 -5.4012 -3.1228 -2.4375 20 1 -6.5931 -1.7265 -4.0223 21 1 -5.9130 -3.9669 -4.6525 22 6 -0.8857 -3.2488 -6.1988 23 6 -1.5658 -1.9234 -6.5510 24 1 -0.3632 0.0602 1.0260 25 1 -0.3633 0.8583 -0.5651 26 1 -0.3632 -0.9186 -0.4608 27 1 4.4030 1.3934 -0.0102 28 1 4.4678 -1.2637 -0.0068 29 1 2.1668 -3.1695 0.7887 30 1 0.6095 -3.9557 -0.9101 31 1 -0.6526 -3.3679 -2.9173 32 1 -1.0219 -0.7355 -3.7991 33 1 0.3666 -1.3940 -4.6972 34 1 -4.6263 -0.2893 -4.9435 35 1 0.2020 -3.2882 -6.2576 36 1 -1.4049 -4.1683 -6.4695 37 1 -2.5320 -1.9715 -7.0533 38 1 -0.9259 -1.0904 -6.8417 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493206175.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:38 Heat of formation + Delta-G solvation = 72.659009 kcal Electronic energy + Delta-G solvation = -21186.400918 eV Core-core repulsion = 18031.537537 eV Total energy + Delta-G solvation = -3154.863381 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.91885 -40.47166 -38.51424 -35.11049 -34.73205 -33.94919 -33.67189 -30.36815 -28.27976 -27.63459 -27.22639 -24.21179 -22.94756 -21.87903 -21.72605 -21.32847 -19.95626 -18.43814 -18.01424 -17.12166 -16.75139 -16.43954 -16.25312 -16.00028 -15.59856 -15.08451 -14.83250 -14.58537 -14.46939 -14.18566 -13.74589 -13.49594 -13.44633 -13.19467 -13.14510 -12.92558 -12.78468 -12.39002 -12.05669 -11.61326 -11.48323 -11.12821 -10.89605 -10.73424 -10.44020 -10.10988 -9.81896 -9.77532 -9.19875 -8.09624 -6.24122 -0.05044 1.19933 1.44174 1.46931 1.52659 1.76321 2.00631 2.38417 2.40317 2.48013 3.17737 3.48530 3.66397 3.70586 4.01547 4.23435 4.25369 4.31584 4.52095 4.52970 4.55705 4.62385 4.70920 4.71770 4.80913 4.95223 4.98845 5.02905 5.16706 5.25580 5.36221 5.53512 5.59841 5.69382 5.76268 5.87341 6.18475 6.35360 6.80215 6.84623 6.88181 7.40564 7.46263 8.97312 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022394 B = 0.004818 C = 0.004542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.061048 B = 5810.492217 C = 6163.824219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.348 5.348 3 N -0.344 5.344 4 C 0.032 3.968 5 C -0.272 4.272 6 C 0.108 3.892 7 C -0.013 4.013 8 C -0.185 4.185 9 C 0.512 3.488 10 O -0.581 6.581 11 N -0.690 5.690 12 C 0.185 3.815 13 C 0.004 3.996 14 C -0.503 4.503 15 H 0.069 0.931 16 C 0.026 3.974 17 N -0.910 5.910 18 Si 0.951 3.049 19 H -0.266 1.266 20 H -0.296 1.296 21 H -0.271 1.271 22 C -0.180 4.180 23 C -0.155 4.155 24 H 0.094 0.906 25 H 0.065 0.935 26 H 0.079 0.921 27 H 0.205 0.795 28 H 0.171 0.829 29 H 0.200 0.800 30 H 0.182 0.818 31 H 0.412 0.588 32 H 0.023 0.977 33 H 0.031 0.969 34 H 0.258 0.742 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.064 0.936 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.066 -6.892 11.166 16.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.130 5.130 3 N -0.168 5.168 4 C -0.151 4.151 5 C -0.301 4.301 6 C -0.020 4.020 7 C -0.033 4.033 8 C -0.207 4.207 9 C 0.302 3.698 10 O -0.463 6.463 11 N -0.339 5.339 12 C 0.060 3.940 13 C 0.003 3.997 14 C -0.540 4.540 15 H 0.087 0.913 16 C -0.175 4.175 17 N -0.547 5.547 18 Si 0.777 3.223 19 H -0.191 1.191 20 H -0.222 1.222 21 H -0.196 1.196 22 C -0.217 4.217 23 C -0.193 4.193 24 H 0.112 0.888 25 H 0.084 0.916 26 H 0.098 0.902 27 H 0.221 0.779 28 H 0.188 0.812 29 H 0.217 0.783 30 H 0.199 0.801 31 H 0.249 0.751 32 H 0.041 0.959 33 H 0.049 0.951 34 H 0.067 0.933 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.083 0.917 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.343 -4.958 10.945 15.220 hybrid contribution -0.916 -0.559 -0.370 1.135 sum 8.427 -5.517 10.574 14.604 Atomic orbital electron populations 1.21791 0.74598 1.03703 1.03195 1.48733 1.06291 1.02993 1.54966 1.77132 1.03216 1.09687 1.26741 1.24045 0.94978 0.96195 0.99849 1.21985 0.95969 0.94714 1.17440 1.20595 0.91405 0.89423 1.00626 1.22256 0.92705 0.90193 0.98184 1.23493 1.01367 1.02335 0.93498 1.19197 0.79558 0.86766 0.84315 1.90907 1.53790 1.24159 1.77473 1.45804 1.40973 1.22562 1.24594 1.20445 0.94726 0.92166 0.86639 1.19116 0.94738 0.98551 0.87246 1.20595 0.93013 1.03444 1.36988 0.91277 1.25716 1.01796 0.95035 0.94969 1.70128 1.30962 1.07654 1.45953 0.85732 0.79489 0.77849 0.79259 1.19055 1.22175 1.19622 1.23062 0.98015 0.94408 1.06191 1.22327 0.99687 0.96308 1.00999 0.88780 0.91624 0.90239 0.77854 0.81182 0.78300 0.80117 0.75131 0.95863 0.95110 0.93299 0.89731 0.89563 0.91743 0.91731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.36 10.23 127.77 1.31 4.67 16 2 N -0.35 -11.72 3.00 -356.60 -1.07 -12.79 16 3 N -0.34 -12.41 12.54 -57.39 -0.72 -13.13 16 4 C 0.03 0.93 11.96 85.04 1.02 1.95 16 5 C -0.27 -7.29 10.83 22.53 0.24 -7.05 16 6 C 0.11 3.07 4.71 40.54 0.19 3.27 16 7 C -0.01 -0.25 9.86 23.72 0.23 -0.01 16 8 C -0.19 -4.03 9.36 23.64 0.22 -3.81 16 9 C 0.51 17.23 5.83 86.29 0.50 17.74 16 10 O -0.58 -24.44 12.29 -4.46 -0.05 -24.49 16 11 N -0.69 -24.69 5.42 -467.58 -2.53 -27.22 16 12 C 0.19 8.22 5.55 86.38 0.48 8.70 16 13 C 0.00 0.19 1.65 -52.93 -0.09 0.10 16 14 C -0.50 -24.44 8.22 25.60 0.21 -24.23 16 15 H 0.07 3.16 7.82 -2.91 -0.02 3.14 16 16 C 0.03 1.31 5.36 84.66 0.45 1.76 16 17 N -0.91 -50.43 12.48 21.45 0.27 -50.17 16 18 Si 0.95 40.47 29.54 68.60 2.03 42.49 16 19 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 20 H -0.30 -12.90 7.11 99.48 0.71 -12.19 16 21 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 22 C -0.18 -7.15 9.93 30.62 0.30 -6.85 16 23 C -0.16 -7.15 9.01 30.62 0.28 -6.88 16 24 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 25 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 26 H 0.08 2.47 5.08 -2.39 -0.01 2.45 16 27 H 0.20 4.33 8.06 -2.91 -0.02 4.31 16 28 H 0.17 3.39 8.06 -2.91 -0.02 3.36 16 29 H 0.20 1.85 8.06 -2.91 -0.02 1.83 16 30 H 0.18 2.40 8.06 -2.91 -0.02 2.38 16 31 H 0.41 13.03 8.00 -92.71 -0.74 12.29 16 32 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.03 1.39 8.10 -2.39 -0.02 1.37 16 34 H 0.26 13.92 8.32 -92.71 -0.77 13.15 16 35 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 36 H 0.09 3.31 8.14 -2.38 -0.02 3.29 16 37 H 0.06 3.24 8.04 -2.39 -0.02 3.22 16 38 H 0.06 2.90 8.14 -2.39 -0.02 2.88 16 Total: -1.00 -69.91 325.54 3.59 -66.32 By element: Atomic # 1 Polarization: 29.30 SS G_CDS: 0.32 Total: 29.63 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: 5.35 Total: -10.64 kcal Atomic # 7 Polarization: -99.25 SS G_CDS: -4.06 Total: -103.31 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -0.05 Total: -24.49 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.49 kcal Total: -69.91 3.59 -66.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493206175.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.978 kcal (2) G-P(sol) polarization free energy of solvation -69.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds