Wall clock time and date at job start Mon Mar 30 2020 02:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35680 * 116.99779 * 2 1 4 4 C 1.38929 * 119.68203 * 180.02562 * 3 2 1 5 5 C 1.38369 * 119.10948 * 179.97438 * 4 3 2 6 6 C 1.38829 * 118.48685 * 359.97438 * 5 4 3 7 7 C 1.50704 * 120.35230 * 179.97438 * 6 5 4 8 8 N 1.46900 * 109.47086 * 90.00318 * 7 6 5 9 9 C 1.46904 * 110.99779 * 179.97438 * 8 7 6 10 10 C 1.52996 * 109.46858 * 179.97438 * 9 8 7 11 11 H 1.09000 * 109.47753 * 305.00128 * 10 9 8 12 12 C 1.47204 * 109.47042 * 64.99895 * 10 9 8 13 13 N 8.58828 * 97.57650 * 331.77343 * 2 1 3 14 14 C 1.52996 * 109.47153 * 184.99851 * 10 9 8 15 15 C 1.50702 * 109.47159 * 175.00123 * 14 10 9 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 10 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 10 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 C 1.38042 * 119.28860 * 0.25473 * 6 5 4 24 24 N 1.31960 * 120.83871 * 359.45569 * 23 6 5 25 25 H 1.08993 * 109.47196 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46792 * 300.00468 * 1 2 3 27 27 H 1.09009 * 109.47038 * 59.99704 * 1 2 3 28 28 H 1.08001 * 120.43759 * 0.02562 * 4 3 2 29 29 H 1.08004 * 120.75322 * 180.02562 * 5 4 3 30 30 H 1.09003 * 109.47324 * 330.00137 * 7 6 5 31 31 H 1.09004 * 109.47052 * 210.00296 * 7 6 5 32 32 H 1.00897 * 111.00127 * 56.04185 * 8 7 6 33 33 H 1.08997 * 109.46933 * 59.99775 * 9 8 7 34 34 H 1.08996 * 109.47325 * 299.99917 * 9 8 7 35 35 H 1.09004 * 109.47066 * 55.00326 * 14 10 9 36 36 H 1.08994 * 109.47405 * 295.00156 * 14 10 9 37 37 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 38 38 H 1.08003 * 119.57711 * 179.72534 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4327 1.2740 -0.0005 5 6 4.0485 2.5131 -0.0011 6 6 3.2505 3.6491 -0.0016 7 6 3.8769 5.0198 -0.0016 8 7 4.0809 5.4649 -1.3866 9 6 4.6907 6.8009 -1.4258 10 6 4.8877 7.2290 -2.8813 11 1 5.4675 6.4710 -3.4078 12 6 3.5751 7.3809 -3.5300 13 7 2.5614 7.5009 -4.0264 14 6 5.6350 8.5634 -2.9237 15 6 5.9371 8.9246 -4.3553 16 1 5.6268 8.2683 -5.1549 17 6 6.6043 10.0961 -4.6446 18 7 6.9818 10.8955 -3.6709 19 14 6.9721 10.5476 -6.4195 20 1 5.6987 10.6641 -7.1746 21 1 7.6932 11.8451 -6.4609 22 1 7.8172 9.4923 -7.0339 23 6 1.8771 3.5096 0.0038 24 7 1.3186 2.3141 -0.0014 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 4.0229 0.3695 -0.0014 29 1 5.1255 2.5946 -0.0019 30 1 4.8372 4.9805 0.5126 31 1 3.2182 5.7203 0.5119 32 1 3.2143 5.4480 -1.9032 33 1 5.6565 6.7742 -0.9213 34 1 4.0374 7.5134 -0.9223 35 1 6.5677 8.4753 -2.3666 36 1 5.0162 9.3408 -2.4757 37 1 7.4515 11.7195 -3.8744 38 1 1.2519 4.3903 0.0079 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000519840004.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:46 Heat of formation + Delta-G solvation = -8.401206 kcal Electronic energy + Delta-G solvation = -19646.357303 eV Core-core repulsion = 16487.978888 eV Total energy + Delta-G solvation = -3158.378416 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.60235 -39.26633 -38.65077 -36.61886 -35.47581 -33.92934 -33.16316 -31.66600 -28.80769 -28.02220 -26.08938 -24.44360 -23.91591 -23.53539 -22.55263 -19.36510 -18.55257 -18.26533 -18.08927 -16.99220 -16.96414 -16.64106 -15.88147 -15.69231 -15.46722 -15.24036 -14.77378 -14.65121 -14.38577 -14.08412 -14.02654 -13.88664 -13.54931 -13.15000 -13.00422 -12.92058 -12.67182 -12.49520 -12.41490 -12.32834 -12.12095 -11.93093 -11.39680 -11.16433 -10.81114 -10.59633 -10.53440 -9.53267 -9.26759 -8.18424 -6.26121 0.14694 0.32454 1.41797 1.43015 1.50084 1.96522 1.98722 2.16273 2.42278 2.71622 3.16914 3.28104 3.34155 3.38109 3.85934 4.02126 4.06429 4.21371 4.26564 4.40637 4.45598 4.46436 4.63011 4.67078 4.74727 4.80280 4.88027 4.99529 5.00580 5.04951 5.39022 5.49635 5.51212 5.65689 5.81188 6.00781 6.22553 6.23803 6.30958 6.77138 6.84001 6.89043 7.42210 8.92112 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.036791 B = 0.002796 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.872360 B =10011.264341 C =10240.654668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.322 6.322 3 C 0.293 3.707 4 C -0.194 4.194 5 C -0.017 4.017 6 C -0.168 4.168 7 C 0.109 3.891 8 N -0.689 5.689 9 C 0.078 3.922 10 C 0.018 3.982 11 H 0.122 0.878 12 C 0.251 3.749 13 N -0.508 5.508 14 C 0.039 3.961 15 C -0.540 4.540 16 H 0.052 0.948 17 C 0.012 3.988 18 N -0.922 5.922 19 Si 0.946 3.054 20 H -0.282 1.282 21 H -0.282 1.282 22 H -0.263 1.263 23 C 0.130 3.870 24 N -0.560 5.560 25 H 0.122 0.878 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.159 0.841 29 H 0.169 0.831 30 H 0.104 0.896 31 H 0.050 0.950 32 H 0.332 0.668 33 H 0.112 0.888 34 H 0.037 0.963 35 H 0.040 0.960 36 H 0.001 0.999 37 H 0.264 0.736 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.767 -19.336 12.164 23.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.230 6.230 3 C 0.115 3.885 4 C -0.215 4.215 5 C -0.042 4.042 6 C -0.171 4.171 7 C -0.020 4.020 8 N -0.319 5.319 9 C -0.052 4.052 10 C -0.004 4.004 11 H 0.140 0.860 12 C -0.065 4.065 13 N -0.186 5.186 14 C 0.000 4.000 15 C -0.578 4.578 16 H 0.071 0.929 17 C -0.187 4.187 18 N -0.562 5.562 19 Si 0.772 3.228 20 H -0.208 1.208 21 H -0.207 1.207 22 H -0.188 1.188 23 C -0.025 4.025 24 N -0.284 5.284 25 H 0.141 0.859 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.176 0.824 29 H 0.186 0.814 30 H 0.123 0.877 31 H 0.068 0.932 32 H 0.149 0.851 33 H 0.131 0.869 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.019 0.981 37 H 0.073 0.927 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -7.417 -19.681 11.388 23.917 hybrid contribution 0.205 1.385 -0.730 1.579 sum -7.211 -18.296 10.658 22.368 Atomic orbital electron populations 1.23003 0.76192 1.04505 1.01948 1.86212 1.24091 1.24644 1.88007 1.20226 0.90373 0.84770 0.93152 1.21373 0.91476 1.00764 1.07842 1.21657 1.01948 0.89843 0.90783 1.20738 0.94138 0.97017 1.05192 1.20790 1.01335 0.90543 0.89324 1.60634 1.31352 1.26195 1.13764 1.21960 1.01697 0.88367 0.93128 1.19268 0.84652 1.01286 0.95203 0.85996 1.29703 0.94374 0.90425 0.91981 1.81004 1.14840 1.11623 1.11089 1.18985 0.95281 0.89731 0.96024 1.21548 1.36550 1.05865 0.93874 0.92942 1.25689 0.95792 0.96523 1.00706 1.70017 1.40256 1.12782 1.33157 0.85787 0.78169 0.77890 0.80953 1.20835 1.20726 1.18801 1.22561 0.93170 0.93596 0.93217 1.67280 1.41666 0.99309 1.20152 0.85948 0.92617 0.93097 0.82358 0.81368 0.87741 0.93230 0.85065 0.86941 0.94493 0.94225 0.98068 0.92717 0.81871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 10.38 113.37 1.18 1.78 16 2 O -0.32 -6.87 10.48 -89.97 -0.94 -7.81 16 3 C 0.29 6.65 7.49 84.80 0.63 7.29 16 4 C -0.19 -3.58 10.04 22.47 0.23 -3.35 16 5 C -0.02 -0.28 9.85 22.44 0.22 -0.06 16 6 C -0.17 -3.09 5.41 -19.77 -0.11 -3.20 16 7 C 0.11 1.85 5.83 85.56 0.50 2.35 16 8 N -0.69 -15.30 6.49 -517.92 -3.36 -18.66 16 9 C 0.08 1.97 5.12 86.30 0.44 2.42 16 10 C 0.02 0.60 2.42 -12.60 -0.03 0.57 16 11 H 0.12 3.94 8.14 -2.39 -0.02 3.92 16 12 C 0.25 9.78 12.97 89.45 1.16 10.94 16 13 N -0.51 -21.73 18.53 20.00 0.37 -21.36 16 14 C 0.04 1.72 4.42 29.85 0.13 1.85 16 15 C -0.54 -28.23 8.60 25.60 0.22 -28.01 16 16 H 0.05 2.72 7.59 -2.91 -0.02 2.70 16 17 C 0.01 0.65 5.46 84.66 0.46 1.11 16 18 N -0.92 -52.32 13.29 21.45 0.28 -52.03 16 19 Si 0.95 43.15 29.54 68.60 2.03 45.17 16 20 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 22 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 23 C 0.13 2.72 10.85 84.63 0.92 3.64 16 24 N -0.56 -13.35 9.22 -308.94 -2.85 -16.20 16 25 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.06 0.89 8.10 -2.39 -0.02 0.87 16 27 H 0.05 0.87 8.10 -2.38 -0.02 0.85 16 28 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 29 H 0.17 1.94 8.06 -2.91 -0.02 1.91 16 30 H 0.10 1.44 8.09 -2.39 -0.02 1.43 16 31 H 0.05 0.79 8.09 -2.38 -0.02 0.77 16 32 H 0.33 8.26 7.80 -89.70 -0.70 7.56 16 33 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 36 H 0.00 0.04 8.14 -2.39 -0.02 0.03 16 37 H 0.26 14.27 8.31 -92.70 -0.77 13.50 16 38 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -65.40 336.82 1.85 -63.55 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: 0.36 Total: 10.00 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: 5.96 Total: -2.66 kcal Atomic # 7 Polarization: -102.71 SS G_CDS: -5.55 Total: -108.26 kcal Atomic # 8 Polarization: -6.87 SS G_CDS: -0.94 Total: -7.81 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Total: -65.40 1.85 -63.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519840004.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.151 kcal (2) G-P(sol) polarization free energy of solvation -65.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds