Wall clock time and date at job start Mon Mar 30 2020 01:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47171 * 2 1 4 4 N 1.46899 * 109.47084 * 119.99836 * 2 1 3 5 5 C 1.46904 * 110.99927 * 275.00047 * 4 2 1 6 6 C 1.53006 * 109.46989 * 179.97438 * 5 4 2 7 7 H 1.08990 * 109.47559 * 305.00030 * 6 5 4 8 8 C 1.47204 * 109.46720 * 65.00348 * 6 5 4 9 9 N 4.90940 * 135.91323 * 112.22593 * 2 1 3 10 10 C 1.53003 * 109.46777 * 184.99874 * 6 5 4 11 11 C 1.50705 * 109.46798 * 175.00123 * 10 6 5 12 12 H 1.08005 * 120.00110 * 0.02562 * 11 10 6 13 13 C 1.37876 * 119.99939 * 180.02562 * 11 10 6 14 14 N 1.31513 * 120.00067 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99909 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47359 * 90.00080 * 15 13 11 17 17 H 1.48501 * 109.46895 * 209.99742 * 15 13 11 18 18 H 1.48502 * 109.47219 * 329.99580 * 15 13 11 19 19 C 1.50700 * 109.47267 * 239.99948 * 2 1 3 20 20 C 1.38830 * 120.75365 * 279.97629 * 19 2 1 21 21 C 1.38049 * 119.28862 * 180.02562 * 20 19 2 22 22 N 1.31972 * 120.83284 * 0.02714 * 21 20 19 23 23 C 1.32245 * 121.64705 * 359.67481 * 22 21 20 24 24 O 1.35676 * 119.68712 * 180.29082 * 23 22 21 25 25 C 1.38375 * 120.75872 * 100.00128 * 19 2 1 26 26 H 1.09005 * 109.46532 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47227 * 299.99940 * 1 2 3 28 28 H 1.08998 * 109.47242 * 60.00612 * 1 2 3 29 29 H 1.00897 * 111.00450 * 38.95761 * 4 2 1 30 30 H 1.08994 * 109.47387 * 300.00095 * 5 4 2 31 31 H 1.08994 * 109.47275 * 60.00043 * 5 4 2 32 32 H 1.08999 * 109.47223 * 295.00302 * 10 6 5 33 33 H 1.08997 * 109.46671 * 55.00548 * 10 6 5 34 34 H 0.96995 * 120.00275 * 180.02562 * 14 13 11 35 35 H 1.08002 * 120.35803 * 0.04120 * 20 19 2 36 36 H 1.07993 * 119.58638 * 179.97438 * 21 20 19 37 37 H 0.96697 * 113.99847 * 270.29205 * 24 23 22 38 38 H 1.08002 * 120.44076 * 359.94926 * 25 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0824 0.2227 2.3469 6 6 2.5950 -0.5331 3.5746 7 1 1.9692 -1.4079 3.7502 8 6 3.9839 -0.9620 3.3421 9 7 5.0564 -1.2920 3.1619 10 6 2.5427 0.3852 4.7973 11 6 2.9305 -0.3940 6.0276 12 1 3.1889 -1.4395 5.9455 13 6 2.9555 0.2278 7.2579 14 7 2.6414 1.5009 7.3578 15 14 3.4369 -0.7378 8.7827 16 1 4.9053 -0.6459 8.9839 17 1 2.7390 -0.1743 9.9662 18 1 3.0489 -2.1609 8.6105 19 6 2.0324 -0.7104 -1.2304 20 6 2.0742 -2.0971 -1.2822 21 6 2.5405 -2.7165 -2.4244 22 7 2.9451 -2.0075 -3.4613 23 6 2.9150 -0.6854 -3.4521 24 8 3.3351 0.0040 -4.5425 25 6 2.4630 0.0045 -2.3342 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 1.4497 -1.4979 1.4101 30 1 2.7588 1.0463 2.1182 31 1 1.0871 0.6164 2.5525 32 1 3.2363 1.2145 4.6587 33 1 1.5313 0.7735 4.9169 34 1 2.6593 1.9385 8.2232 35 1 1.7452 -2.6850 -0.4381 36 1 2.5755 -3.7950 -2.4697 37 1 4.2785 0.2163 -4.5342 38 1 2.4437 1.0844 -2.3282 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567493854.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:49 Heat of formation + Delta-G solvation = 7.857676 kcal Electronic energy + Delta-G solvation = -20073.751254 eV Core-core repulsion = 16916.077877 eV Total energy + Delta-G solvation = -3157.673378 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.67763 -38.15881 -37.10119 -35.91175 -33.92856 -32.84637 -31.35311 -30.35206 -29.26785 -26.38374 -24.52299 -23.71601 -22.74742 -21.86022 -21.13500 -18.56178 -17.19113 -16.99151 -16.47974 -16.30716 -15.74665 -15.09381 -14.93151 -14.50081 -14.39324 -14.07684 -13.56009 -13.30398 -13.01436 -12.79760 -12.37793 -12.32973 -12.14520 -11.97624 -11.90487 -11.66830 -11.38067 -11.29124 -11.09775 -10.75717 -10.57910 -10.30026 -9.81328 -9.64683 -9.55198 -9.27328 -9.07212 -8.51901 -8.46181 -6.14139 -4.17521 0.87131 1.05027 3.26891 3.27442 3.33739 3.36657 3.67418 3.68246 3.77986 4.02004 4.37072 4.45324 4.56150 4.82307 4.84518 4.90279 4.94130 5.05249 5.24222 5.28464 5.42322 5.45629 5.47530 5.52352 5.68094 5.78984 5.84658 5.99226 6.09415 6.30483 6.36129 6.42690 6.92249 7.27600 7.30075 7.36562 7.46966 7.76000 7.80926 8.17882 8.53561 8.87225 9.48367 10.96721 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.033076 B = 0.003228 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.322525 B = 8672.106557 C = 8944.496178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.119 3.881 3 H 0.094 0.906 4 N -0.685 5.685 5 C 0.066 3.934 6 C 0.010 3.990 7 H 0.100 0.900 8 C 0.253 3.747 9 N -0.477 5.477 10 C 0.032 3.968 11 C -0.527 4.527 12 H 0.057 0.943 13 C 0.063 3.937 14 N -0.892 5.892 15 Si 0.892 3.108 16 H -0.280 1.280 17 H -0.285 1.285 18 H -0.272 1.272 19 C -0.004 4.004 20 C -0.160 4.160 21 C 0.120 3.880 22 N -0.510 5.510 23 C 0.305 3.695 24 O -0.486 6.486 25 C -0.182 4.182 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.344 0.656 30 H 0.078 0.922 31 H 0.053 0.947 32 H 0.026 0.974 33 H 0.038 0.962 34 H 0.263 0.737 35 H 0.139 0.861 36 H 0.159 0.841 37 H 0.399 0.601 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.988 -2.364 -17.715 18.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.009 3.991 3 H 0.112 0.888 4 N -0.316 5.316 5 C -0.063 4.063 6 C -0.012 4.012 7 H 0.117 0.883 8 C -0.064 4.064 9 N -0.154 5.154 10 C -0.007 4.007 11 C -0.565 4.565 12 H 0.075 0.925 13 C -0.139 4.139 14 N -0.530 5.530 15 Si 0.719 3.281 16 H -0.206 1.206 17 H -0.211 1.211 18 H -0.197 1.197 19 C -0.012 4.012 20 C -0.180 4.180 21 C -0.036 4.036 22 N -0.230 5.230 23 C 0.127 3.873 24 O -0.293 6.293 25 C -0.204 4.204 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.163 0.837 30 H 0.097 0.903 31 H 0.071 0.929 32 H 0.044 0.956 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.157 0.843 36 H 0.176 0.824 37 H 0.257 0.743 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.985 -3.041 -18.952 19.604 hybrid contribution -0.812 0.257 2.048 2.218 sum -4.798 -2.784 -16.904 17.791 Atomic orbital electron populations 1.22483 0.95394 1.02825 1.03009 1.20469 0.93159 0.97643 0.87805 0.88839 1.60587 1.57288 1.10075 1.03688 1.22128 1.00590 0.95135 0.88457 1.19212 0.84507 1.00804 0.96678 0.88254 1.28873 0.94760 0.92115 0.90607 1.81017 1.12778 1.10297 1.11332 1.19167 0.98810 0.93873 0.88825 1.21136 1.46773 0.96709 0.91928 0.92483 1.24950 0.94968 0.94882 0.99145 1.69930 1.48204 1.09925 1.24948 0.86590 0.78744 0.80273 0.82466 1.20620 1.21094 1.19724 1.20168 0.93209 0.93727 0.94113 1.21955 1.01567 0.94828 0.99641 1.22490 0.93581 0.99891 0.87681 1.67132 1.17794 1.07959 1.30080 1.19102 0.95696 0.86940 0.85589 1.84763 1.30679 1.72973 1.40848 1.21947 1.03991 1.01673 0.92796 0.91956 0.91251 0.91859 0.83724 0.90342 0.92873 0.95560 0.94425 0.92762 0.84330 0.82393 0.74334 0.84399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.40 9.14 37.16 0.34 -1.06 16 2 C 0.12 1.13 2.82 -68.86 -0.19 0.94 16 3 H 0.09 0.89 7.70 -51.93 -0.40 0.49 16 4 N -0.69 -7.66 5.43 -107.95 -0.59 -8.24 16 5 C 0.07 0.87 4.85 -3.82 -0.02 0.85 16 6 C 0.01 0.17 2.35 -93.40 -0.22 -0.05 16 7 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 8 C 0.25 5.08 13.67 -20.74 -0.28 4.80 16 9 N -0.48 -10.60 18.54 42.17 0.78 -9.82 16 10 C 0.03 0.71 4.42 -27.88 -0.12 0.58 16 11 C -0.53 -13.66 8.60 -34.44 -0.30 -13.96 16 12 H 0.06 1.47 7.59 -52.48 -0.40 1.08 16 13 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 14 N -0.89 -25.03 13.29 55.43 0.74 -24.29 16 15 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 18 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 19 C 0.00 -0.04 4.98 -104.35 -0.52 -0.56 16 20 C -0.16 -1.60 9.42 -39.43 -0.37 -1.97 16 21 C 0.12 1.26 11.18 -17.56 -0.20 1.07 16 22 N -0.51 -6.42 10.39 -13.33 -0.14 -6.56 16 23 C 0.31 3.56 7.74 -17.12 -0.13 3.43 16 24 O -0.49 -4.93 13.56 -18.73 -0.25 -5.18 16 25 C -0.18 -1.91 9.71 -39.28 -0.38 -2.29 16 26 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 27 H 0.07 0.54 7.45 -51.93 -0.39 0.16 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.34 3.34 7.91 -39.29 -0.31 3.03 16 30 H 0.08 1.08 8.05 -51.93 -0.42 0.66 16 31 H 0.05 0.62 7.44 -51.93 -0.39 0.23 16 32 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.26 7.02 8.31 -40.82 -0.34 6.69 16 35 H 0.14 1.17 7.37 -52.49 -0.39 0.78 16 36 H 0.16 1.23 8.06 -52.49 -0.42 0.81 16 37 H 0.40 2.15 9.06 45.56 0.41 2.56 16 38 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 334.11 15.07 5.03 5.03 Total: -1.00 -32.68 334.11 -6.31 -38.99 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -4.37 Total: 0.78 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -2.49 Total: -6.63 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: 0.79 Total: -48.91 kcal Atomic # 8 Polarization: -4.93 SS G_CDS: -0.25 Total: -5.18 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.68 -6.31 -38.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567493854.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.846 kcal (2) G-P(sol) polarization free energy of solvation -32.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds