Wall clock time and date at job start Mon Mar 30 2020 01:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47171 * 2 1 4 4 N 1.46899 * 109.47084 * 119.99836 * 2 1 3 5 5 C 1.46904 * 110.99927 * 275.00047 * 4 2 1 6 6 C 1.53006 * 109.46989 * 179.97438 * 5 4 2 7 7 H 1.08990 * 109.47559 * 305.00030 * 6 5 4 8 8 C 1.47204 * 109.46720 * 65.00348 * 6 5 4 9 9 N 4.90940 * 135.91323 * 112.22593 * 2 1 3 10 10 C 1.53003 * 109.46777 * 184.99874 * 6 5 4 11 11 C 1.50705 * 109.46798 * 175.00123 * 10 6 5 12 12 H 1.08005 * 120.00110 * 0.02562 * 11 10 6 13 13 C 1.37876 * 119.99939 * 180.02562 * 11 10 6 14 14 N 1.31513 * 120.00067 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99909 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47359 * 90.00080 * 15 13 11 17 17 H 1.48501 * 109.46895 * 209.99742 * 15 13 11 18 18 H 1.48502 * 109.47219 * 329.99580 * 15 13 11 19 19 C 1.50700 * 109.47267 * 239.99948 * 2 1 3 20 20 C 1.38830 * 120.75365 * 279.97629 * 19 2 1 21 21 C 1.38049 * 119.28862 * 180.02562 * 20 19 2 22 22 N 1.31972 * 120.83284 * 0.02714 * 21 20 19 23 23 C 1.32245 * 121.64705 * 359.67481 * 22 21 20 24 24 O 1.35676 * 119.68712 * 180.29082 * 23 22 21 25 25 C 1.38375 * 120.75872 * 100.00128 * 19 2 1 26 26 H 1.09005 * 109.46532 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47227 * 299.99940 * 1 2 3 28 28 H 1.08998 * 109.47242 * 60.00612 * 1 2 3 29 29 H 1.00897 * 111.00450 * 38.95761 * 4 2 1 30 30 H 1.08994 * 109.47387 * 300.00095 * 5 4 2 31 31 H 1.08994 * 109.47275 * 60.00043 * 5 4 2 32 32 H 1.08999 * 109.47223 * 295.00302 * 10 6 5 33 33 H 1.08997 * 109.46671 * 55.00548 * 10 6 5 34 34 H 0.96995 * 120.00275 * 180.02562 * 14 13 11 35 35 H 1.08002 * 120.35803 * 0.04120 * 20 19 2 36 36 H 1.07993 * 119.58638 * 179.97438 * 21 20 19 37 37 H 0.96697 * 113.99847 * 270.29205 * 24 23 22 38 38 H 1.08002 * 120.44076 * 359.94926 * 25 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0824 0.2227 2.3469 6 6 2.5950 -0.5331 3.5746 7 1 1.9692 -1.4079 3.7502 8 6 3.9839 -0.9620 3.3421 9 7 5.0564 -1.2920 3.1619 10 6 2.5427 0.3852 4.7973 11 6 2.9305 -0.3940 6.0276 12 1 3.1889 -1.4395 5.9455 13 6 2.9555 0.2278 7.2579 14 7 2.6414 1.5009 7.3578 15 14 3.4369 -0.7378 8.7827 16 1 4.9053 -0.6459 8.9839 17 1 2.7390 -0.1743 9.9662 18 1 3.0489 -2.1609 8.6105 19 6 2.0324 -0.7104 -1.2304 20 6 2.0742 -2.0971 -1.2822 21 6 2.5405 -2.7165 -2.4244 22 7 2.9451 -2.0075 -3.4613 23 6 2.9150 -0.6854 -3.4521 24 8 3.3351 0.0040 -4.5425 25 6 2.4630 0.0045 -2.3342 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 1.4497 -1.4979 1.4101 30 1 2.7588 1.0463 2.1182 31 1 1.0871 0.6164 2.5525 32 1 3.2363 1.2145 4.6587 33 1 1.5313 0.7735 4.9169 34 1 2.6593 1.9385 8.2232 35 1 1.7452 -2.6850 -0.4381 36 1 2.5755 -3.7950 -2.4697 37 1 4.2785 0.2163 -4.5342 38 1 2.4437 1.0844 -2.3282 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567493854.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:48 Heat of formation + Delta-G solvation = -16.899539 kcal Electronic energy + Delta-G solvation = -20074.824808 eV Core-core repulsion = 16916.077877 eV Total energy + Delta-G solvation = -3158.746931 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.45572 -39.15165 -38.10551 -37.10546 -35.57061 -34.30950 -32.61063 -31.12845 -30.26665 -27.91001 -25.45609 -24.54938 -24.02112 -23.41627 -21.94577 -19.38040 -18.60086 -18.26431 -17.76057 -17.25671 -16.59445 -16.49882 -16.03031 -15.61754 -15.42178 -15.12486 -14.57903 -14.40114 -14.19997 -14.17685 -13.73557 -13.55736 -13.27035 -13.05005 -13.01664 -12.85099 -12.68192 -12.67098 -12.46602 -12.31764 -12.07054 -11.86527 -11.38322 -11.14264 -10.55550 -10.54045 -10.41421 -9.84340 -9.33479 -8.18401 -6.26010 0.10316 0.26429 1.40677 1.43663 1.51947 2.10495 2.17178 2.42397 2.54947 2.90082 3.14451 3.17966 3.38144 3.69104 3.85438 4.09292 4.16555 4.21041 4.28576 4.36949 4.44975 4.62523 4.73641 4.75027 4.79419 4.85016 4.97162 5.04609 5.10619 5.30598 5.36631 5.49811 5.65263 5.65789 5.81284 6.01494 6.23048 6.51982 6.63677 6.85918 6.97156 6.98651 7.42698 8.92364 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.033076 B = 0.003228 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.322525 B = 8672.106557 C = 8944.496178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.125 3.875 3 H 0.094 0.906 4 N -0.693 5.693 5 C 0.080 3.920 6 C 0.020 3.980 7 H 0.123 0.877 8 C 0.266 3.734 9 N -0.518 5.518 10 C 0.037 3.963 11 C -0.538 4.538 12 H 0.054 0.946 13 C 0.012 3.988 14 N -0.923 5.923 15 Si 0.945 3.055 16 H -0.286 1.286 17 H -0.280 1.280 18 H -0.263 1.263 19 C -0.010 4.010 20 C -0.163 4.163 21 C 0.111 3.889 22 N -0.540 5.540 23 C 0.291 3.709 24 O -0.496 6.496 25 C -0.187 4.187 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.354 0.646 30 H 0.070 0.930 31 H 0.075 0.925 32 H -0.001 1.001 33 H 0.038 0.962 34 H 0.263 0.737 35 H 0.155 0.845 36 H 0.180 0.820 37 H 0.417 0.583 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.060 -3.041 -17.890 19.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.015 3.985 3 H 0.112 0.888 4 N -0.325 5.325 5 C -0.050 4.050 6 C -0.002 4.002 7 H 0.141 0.859 8 C -0.051 4.051 9 N -0.196 5.196 10 C -0.001 4.001 11 C -0.576 4.576 12 H 0.073 0.927 13 C -0.187 4.187 14 N -0.563 5.563 15 Si 0.771 3.229 16 H -0.212 1.212 17 H -0.205 1.205 18 H -0.187 1.187 19 C -0.018 4.018 20 C -0.183 4.183 21 C -0.045 4.045 22 N -0.260 5.260 23 C 0.113 3.887 24 O -0.306 6.306 25 C -0.209 4.209 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.175 0.825 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.018 0.982 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.173 0.827 36 H 0.197 0.803 37 H 0.277 0.723 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -5.056 -3.727 -19.140 20.144 hybrid contribution -0.458 0.467 2.062 2.163 sum -5.514 -3.260 -17.078 18.240 Atomic orbital electron populations 1.22425 0.93852 1.03431 1.03394 1.20442 0.94239 0.97279 0.86551 0.88792 1.60463 1.58353 1.10263 1.03428 1.21901 1.01214 0.94479 0.87407 1.19205 0.83414 1.00981 0.96551 0.85918 1.29453 0.95148 0.91011 0.89442 1.81022 1.14023 1.11806 1.12759 1.18993 0.97787 0.93554 0.89816 1.21581 1.45745 0.96904 0.93367 0.92727 1.25684 0.95368 0.95711 1.01964 1.70020 1.49636 1.11157 1.25522 0.85743 0.77900 0.79582 0.79657 1.21243 1.20497 1.18720 1.20335 0.93114 0.94040 0.94332 1.22167 1.01204 0.94955 0.99946 1.22912 0.93172 1.00968 0.87461 1.67148 1.18965 1.08642 1.31238 1.19328 0.96171 0.87018 0.86196 1.84712 1.32396 1.72801 1.40642 1.22106 1.03739 1.02467 0.92567 0.91265 0.90870 0.91445 0.82540 0.91189 0.90715 0.98238 0.94353 0.92775 0.82732 0.80301 0.72318 0.82995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 9.14 71.98 0.66 -1.56 16 2 C 0.12 2.06 2.82 44.17 0.12 2.19 16 3 H 0.09 1.57 7.70 -2.39 -0.02 1.55 16 4 N -0.69 -13.64 5.43 -495.44 -2.69 -16.33 16 5 C 0.08 1.89 4.85 86.30 0.42 2.31 16 6 C 0.02 0.65 2.35 -12.59 -0.03 0.62 16 7 H 0.12 3.44 8.14 -2.39 -0.02 3.42 16 8 C 0.27 10.35 13.67 89.44 1.22 11.57 16 9 N -0.52 -22.72 18.54 20.01 0.37 -22.35 16 10 C 0.04 1.62 4.42 29.85 0.13 1.75 16 11 C -0.54 -27.47 8.60 25.60 0.22 -27.25 16 12 H 0.05 2.76 7.59 -2.91 -0.02 2.74 16 13 C 0.01 0.62 5.46 84.65 0.46 1.09 16 14 N -0.92 -51.85 13.29 21.45 0.28 -51.56 16 15 Si 0.95 42.51 29.54 68.60 2.03 44.53 16 16 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 17 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 18 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 19 C -0.01 -0.18 4.98 -19.69 -0.10 -0.28 16 20 C -0.16 -2.96 9.42 22.37 0.21 -2.75 16 21 C 0.11 2.19 11.18 84.63 0.95 3.14 16 22 N -0.54 -13.22 10.39 -308.95 -3.21 -16.43 16 23 C 0.29 6.59 7.74 84.80 0.66 7.24 16 24 O -0.50 -9.77 13.56 -89.94 -1.22 -10.99 16 25 C -0.19 -3.68 9.71 22.47 0.22 -3.46 16 26 H 0.07 0.81 8.13 -2.38 -0.02 0.79 16 27 H 0.07 0.91 7.45 -2.39 -0.02 0.89 16 28 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.35 5.73 7.91 -89.70 -0.71 5.02 16 30 H 0.07 1.81 8.05 -2.39 -0.02 1.79 16 31 H 0.07 1.49 7.44 -2.39 -0.02 1.47 16 32 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 33 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 35 H 0.16 2.21 7.37 -2.91 -0.02 2.19 16 36 H 0.18 2.53 8.06 -2.91 -0.02 2.50 16 37 H 0.42 4.27 9.06 -74.06 -0.67 3.59 16 38 H 0.15 2.41 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -69.33 334.11 0.41 -68.92 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -0.29 Total: 9.59 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: 5.14 Total: -5.38 kcal Atomic # 7 Polarization: -101.43 SS G_CDS: -5.25 Total: -106.68 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: -1.22 Total: -10.99 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.53 kcal Total: -69.33 0.41 -68.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567493854.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.018 kcal (2) G-P(sol) polarization free energy of solvation -69.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds