Wall clock time and date at job start Mon Mar 30 2020 01:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47167 * 2 1 4 4 N 1.46895 * 109.47235 * 239.99532 * 2 1 3 5 5 C 1.46906 * 110.99789 * 85.00200 * 4 2 1 6 6 C 1.53002 * 109.47053 * 179.97438 * 5 4 2 7 7 H 1.08998 * 109.46957 * 55.00131 * 6 5 4 8 8 C 1.47199 * 109.47124 * 295.00243 * 6 5 4 9 9 N 4.90939 * 135.91490 * 247.76695 * 2 1 3 10 10 C 1.53001 * 109.46964 * 175.00091 * 6 5 4 11 11 C 1.50699 * 109.46841 * 185.00248 * 10 6 5 12 12 H 1.07995 * 120.00262 * 359.97438 * 11 10 6 13 13 C 1.37881 * 119.99856 * 180.02562 * 11 10 6 14 14 N 1.31519 * 120.00103 * 359.97438 * 13 11 10 15 15 Si 1.86791 * 120.00124 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47583 * 59.99740 * 15 13 11 17 17 H 1.48499 * 109.47176 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47193 * 299.99603 * 15 13 11 19 19 C 1.50708 * 109.46833 * 119.99997 * 2 1 3 20 20 C 1.38824 * 120.75608 * 79.99913 * 19 2 1 21 21 C 1.38049 * 119.28603 * 180.02562 * 20 19 2 22 22 N 1.31965 * 120.83794 * 359.97438 * 21 20 19 23 23 C 1.32252 * 121.64612 * 0.02562 * 22 21 20 24 24 O 1.35676 * 119.68480 * 180.02562 * 23 22 21 25 25 C 1.38379 * 120.75343 * 259.72215 * 19 2 1 26 26 H 1.09001 * 109.47167 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47160 * 300.00338 * 1 2 3 28 28 H 1.08999 * 109.46796 * 60.00168 * 1 2 3 29 29 H 1.00899 * 111.00672 * 321.05145 * 4 2 1 30 30 H 1.08992 * 109.47459 * 299.99826 * 5 4 2 31 31 H 1.09004 * 109.47040 * 59.99976 * 5 4 2 32 32 H 1.08995 * 109.47139 * 305.00028 * 10 6 5 33 33 H 1.09005 * 109.47062 * 65.00231 * 10 6 5 34 34 H 0.96994 * 120.00407 * 179.97438 * 14 13 11 35 35 H 1.07997 * 120.35842 * 359.97438 * 20 19 2 36 36 H 1.08006 * 119.58090 * 179.97438 * 21 20 19 37 37 H 0.96696 * 113.99948 * 90.00035 * 24 23 22 38 38 H 1.08004 * 120.44716 * 359.97438 * 25 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6926 -1.1993 5 6 2.0825 0.2225 -2.3469 6 6 2.5963 -0.5330 -3.5741 7 1 1.9710 -1.4083 -3.7499 8 6 3.9852 -0.9611 -3.3408 9 7 5.0564 -1.2924 -3.1617 10 6 2.5441 0.3851 -4.7969 11 6 2.9331 -0.3940 -6.0269 12 1 3.1920 -1.4392 -5.9446 13 6 2.9593 0.2279 -7.2572 14 7 2.6445 1.5009 -7.3574 15 14 3.4408 -0.7378 -8.7818 16 1 2.4958 -1.8676 -8.9712 17 1 3.3902 0.1533 -9.9687 18 1 4.8186 -1.2671 -8.6180 19 6 2.0323 -0.7105 1.2305 20 6 2.0736 -2.0971 1.2826 21 6 2.5388 -2.7164 2.4253 22 7 2.9428 -2.0074 3.4623 23 6 2.9186 -0.6852 3.4507 24 8 3.3440 0.0042 4.5391 25 6 2.4682 0.0047 2.3321 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.4496 -1.4980 -1.4100 30 1 1.0872 0.6162 -2.5526 31 1 2.7589 1.0461 -2.1182 32 1 1.5326 0.7727 -4.9173 33 1 3.2372 1.2149 -4.6581 34 1 2.6633 1.9386 -8.2228 35 1 1.7445 -2.6850 0.4385 36 1 2.5726 -3.7950 2.4710 37 1 4.2873 0.2162 4.5264 38 1 2.4543 1.0846 2.3240 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567493856.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:54 Heat of formation + Delta-G solvation = 8.008045 kcal Electronic energy + Delta-G solvation = -20074.401573 eV Core-core repulsion = 16916.734716 eV Total energy + Delta-G solvation = -3157.666857 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.67742 -38.15930 -37.10331 -35.92100 -33.93672 -32.84503 -31.35329 -30.35179 -29.26814 -26.38291 -24.52170 -23.71677 -22.74606 -21.85819 -21.13391 -18.56082 -17.19006 -16.99113 -16.47855 -16.30644 -15.74700 -15.09451 -14.93266 -14.50298 -14.39396 -14.07778 -13.55876 -13.30248 -13.01833 -12.79661 -12.37541 -12.32722 -12.14615 -11.97764 -11.90359 -11.66735 -11.38070 -11.29781 -11.09510 -10.74014 -10.59772 -10.30288 -9.81415 -9.64472 -9.55107 -9.28421 -9.07192 -8.51588 -8.46016 -6.13910 -4.17409 0.87125 1.05002 3.27119 3.28136 3.32733 3.36361 3.67795 3.68891 3.78693 4.02072 4.37173 4.45389 4.56114 4.82324 4.84572 4.90281 4.94141 5.05333 5.24281 5.28494 5.42313 5.45647 5.47590 5.52366 5.68182 5.78996 5.84712 5.99280 6.09451 6.30497 6.36129 6.42796 6.92280 7.27534 7.30067 7.36567 7.47039 7.76135 7.80932 8.18024 8.53722 8.87122 9.48387 10.96906 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.033051 B = 0.003229 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.972583 B = 8670.257411 C = 8941.744104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.119 3.881 3 H 0.094 0.906 4 N -0.685 5.685 5 C 0.066 3.934 6 C 0.010 3.990 7 H 0.100 0.900 8 C 0.254 3.746 9 N -0.477 5.477 10 C 0.032 3.968 11 C -0.528 4.528 12 H 0.056 0.944 13 C 0.063 3.937 14 N -0.892 5.892 15 Si 0.892 3.108 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.276 1.276 19 C -0.004 4.004 20 C -0.160 4.160 21 C 0.120 3.880 22 N -0.510 5.510 23 C 0.305 3.695 24 O -0.486 6.486 25 C -0.183 4.183 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.344 0.656 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.037 0.963 33 H 0.026 0.974 34 H 0.263 0.737 35 H 0.139 0.861 36 H 0.159 0.841 37 H 0.399 0.601 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.977 -2.353 17.691 18.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.009 3.991 3 H 0.112 0.888 4 N -0.316 5.316 5 C -0.063 4.063 6 C -0.012 4.012 7 H 0.117 0.883 8 C -0.063 4.063 9 N -0.154 5.154 10 C -0.006 4.006 11 C -0.566 4.566 12 H 0.075 0.925 13 C -0.139 4.139 14 N -0.530 5.530 15 Si 0.719 3.281 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.202 1.202 19 C -0.012 4.012 20 C -0.180 4.180 21 C -0.036 4.036 22 N -0.230 5.230 23 C 0.127 3.873 24 O -0.293 6.293 25 C -0.204 4.204 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.163 0.837 30 H 0.071 0.929 31 H 0.097 0.903 32 H 0.056 0.944 33 H 0.044 0.956 34 H 0.073 0.927 35 H 0.157 0.843 36 H 0.176 0.824 37 H 0.257 0.743 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.976 -3.026 18.929 19.577 hybrid contribution -0.820 0.244 -2.047 2.219 sum -4.795 -2.782 16.882 17.769 Atomic orbital electron populations 1.22482 0.95398 1.02823 1.03008 1.20471 0.93161 0.97640 0.87803 0.88839 1.60590 1.57280 1.10077 1.03690 1.22129 1.00584 0.95139 0.88462 1.19211 0.84512 1.00817 0.96679 0.88262 1.28826 0.94758 0.92130 0.90630 1.80974 1.12845 1.10266 1.11317 1.19160 0.98801 0.93869 0.88806 1.21099 1.46880 0.96690 0.91965 0.92535 1.24950 0.94963 0.94874 0.99133 1.69921 1.48134 1.09921 1.25046 0.86649 0.79312 0.79876 0.82222 1.20043 1.21178 1.20197 1.20169 0.93204 0.93728 0.94120 1.21952 1.01571 0.94828 0.99638 1.22491 0.93601 0.99893 0.87659 1.67131 1.17767 1.07951 1.30103 1.19103 0.95690 0.86938 0.85594 1.84760 1.30634 1.72969 1.40909 1.21952 1.03956 1.01677 0.92830 0.91956 0.91859 0.91254 0.83726 0.92869 0.90345 0.94437 0.95561 0.92700 0.84330 0.82390 0.74328 0.84398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.41 9.14 37.16 0.34 -1.07 16 2 C 0.12 1.14 2.82 -68.86 -0.19 0.94 16 3 H 0.09 0.89 7.70 -51.93 -0.40 0.49 16 4 N -0.69 -7.66 5.43 -107.95 -0.59 -8.24 16 5 C 0.07 0.87 4.85 -3.82 -0.02 0.85 16 6 C 0.01 0.17 2.35 -93.41 -0.22 -0.05 16 7 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 8 C 0.25 5.09 13.67 -20.78 -0.28 4.80 16 9 N -0.48 -10.61 18.53 42.13 0.78 -9.83 16 10 C 0.03 0.71 4.42 -27.88 -0.12 0.59 16 11 C -0.53 -13.70 8.60 -34.44 -0.30 -13.99 16 12 H 0.06 1.46 7.59 -52.49 -0.40 1.06 16 13 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 14 N -0.89 -25.05 13.29 55.43 0.74 -24.31 16 15 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 16 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 C 0.00 -0.04 4.98 -104.35 -0.52 -0.56 16 20 C -0.16 -1.60 9.42 -39.43 -0.37 -1.97 16 21 C 0.12 1.26 11.18 -17.56 -0.20 1.07 16 22 N -0.51 -6.42 10.39 -13.32 -0.14 -6.56 16 23 C 0.31 3.56 7.75 -17.12 -0.13 3.43 16 24 O -0.49 -4.93 13.56 -18.73 -0.25 -5.18 16 25 C -0.18 -1.91 9.71 -39.28 -0.38 -2.29 16 26 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.54 7.45 -51.93 -0.39 0.16 16 29 H 0.34 3.34 7.91 -39.29 -0.31 3.03 16 30 H 0.05 0.62 7.44 -51.93 -0.39 0.23 16 31 H 0.08 1.08 8.05 -51.93 -0.42 0.66 16 32 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 35 H 0.14 1.17 7.37 -52.49 -0.39 0.78 16 36 H 0.16 1.23 8.06 -52.48 -0.42 0.81 16 37 H 0.40 2.15 9.06 45.56 0.41 2.56 16 38 H 0.14 1.19 8.06 -52.48 -0.42 0.77 16 LS Contribution 334.10 15.07 5.03 5.03 Total: -1.00 -32.69 334.10 -6.31 -39.00 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -4.37 Total: 0.81 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: -2.49 Total: -6.64 kcal Atomic # 7 Polarization: -49.73 SS G_CDS: 0.79 Total: -48.94 kcal Atomic # 8 Polarization: -4.93 SS G_CDS: -0.25 Total: -5.18 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.69 -6.31 -39.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567493856.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.008 kcal (2) G-P(sol) polarization free energy of solvation -32.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds