Wall clock time and date at job start Mon Mar 30 2020 01:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47167 * 2 1 4 4 N 1.46895 * 109.47235 * 239.99532 * 2 1 3 5 5 C 1.46906 * 110.99789 * 85.00200 * 4 2 1 6 6 C 1.53002 * 109.47053 * 179.97438 * 5 4 2 7 7 H 1.08998 * 109.46957 * 55.00131 * 6 5 4 8 8 C 1.47199 * 109.47124 * 295.00243 * 6 5 4 9 9 N 4.90939 * 135.91490 * 247.76695 * 2 1 3 10 10 C 1.53001 * 109.46964 * 175.00091 * 6 5 4 11 11 C 1.50699 * 109.46841 * 185.00248 * 10 6 5 12 12 H 1.07995 * 120.00262 * 359.97438 * 11 10 6 13 13 C 1.37881 * 119.99856 * 180.02562 * 11 10 6 14 14 N 1.31519 * 120.00103 * 359.97438 * 13 11 10 15 15 Si 1.86791 * 120.00124 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47583 * 59.99740 * 15 13 11 17 17 H 1.48499 * 109.47176 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47193 * 299.99603 * 15 13 11 19 19 C 1.50708 * 109.46833 * 119.99997 * 2 1 3 20 20 C 1.38824 * 120.75608 * 79.99913 * 19 2 1 21 21 C 1.38049 * 119.28603 * 180.02562 * 20 19 2 22 22 N 1.31965 * 120.83794 * 359.97438 * 21 20 19 23 23 C 1.32252 * 121.64612 * 0.02562 * 22 21 20 24 24 O 1.35676 * 119.68480 * 180.02562 * 23 22 21 25 25 C 1.38379 * 120.75343 * 259.72215 * 19 2 1 26 26 H 1.09001 * 109.47167 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47160 * 300.00338 * 1 2 3 28 28 H 1.08999 * 109.46796 * 60.00168 * 1 2 3 29 29 H 1.00899 * 111.00672 * 321.05145 * 4 2 1 30 30 H 1.08992 * 109.47459 * 299.99826 * 5 4 2 31 31 H 1.09004 * 109.47040 * 59.99976 * 5 4 2 32 32 H 1.08995 * 109.47139 * 305.00028 * 10 6 5 33 33 H 1.09005 * 109.47062 * 65.00231 * 10 6 5 34 34 H 0.96994 * 120.00407 * 179.97438 * 14 13 11 35 35 H 1.07997 * 120.35842 * 359.97438 * 20 19 2 36 36 H 1.08006 * 119.58090 * 179.97438 * 21 20 19 37 37 H 0.96696 * 113.99948 * 90.00035 * 24 23 22 38 38 H 1.08004 * 120.44716 * 359.97438 * 25 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6926 -1.1993 5 6 2.0825 0.2225 -2.3469 6 6 2.5963 -0.5330 -3.5741 7 1 1.9710 -1.4083 -3.7499 8 6 3.9852 -0.9611 -3.3408 9 7 5.0564 -1.2924 -3.1617 10 6 2.5441 0.3851 -4.7969 11 6 2.9331 -0.3940 -6.0269 12 1 3.1920 -1.4392 -5.9446 13 6 2.9593 0.2279 -7.2572 14 7 2.6445 1.5009 -7.3574 15 14 3.4408 -0.7378 -8.7818 16 1 2.4958 -1.8676 -8.9712 17 1 3.3902 0.1533 -9.9687 18 1 4.8186 -1.2671 -8.6180 19 6 2.0323 -0.7105 1.2305 20 6 2.0736 -2.0971 1.2826 21 6 2.5388 -2.7164 2.4253 22 7 2.9428 -2.0074 3.4623 23 6 2.9186 -0.6852 3.4507 24 8 3.3440 0.0042 4.5391 25 6 2.4682 0.0047 2.3321 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.4496 -1.4980 -1.4100 30 1 1.0872 0.6162 -2.5526 31 1 2.7589 1.0461 -2.1182 32 1 1.5326 0.7727 -4.9173 33 1 3.2372 1.2149 -4.6581 34 1 2.6633 1.9386 -8.2228 35 1 1.7445 -2.6850 0.4385 36 1 2.5726 -3.7950 2.4710 37 1 4.2873 0.2162 4.5264 38 1 2.4543 1.0846 2.3240 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567493856.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:54 Heat of formation + Delta-G solvation = -16.763379 kcal Electronic energy + Delta-G solvation = -20075.475742 eV Core-core repulsion = 16916.734716 eV Total energy + Delta-G solvation = -3158.741027 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.45579 -39.15458 -38.11003 -37.11399 -35.57762 -34.31010 -32.61110 -31.12846 -30.26755 -27.90980 -25.45510 -24.55016 -24.02058 -23.41548 -21.94506 -19.37976 -18.59989 -18.26323 -17.76029 -17.25720 -16.59816 -16.49967 -16.03126 -15.62108 -15.42267 -15.12527 -14.58364 -14.39869 -14.20008 -14.17084 -13.73907 -13.55940 -13.27217 -13.05325 -13.02047 -12.83784 -12.68479 -12.67019 -12.44975 -12.34182 -12.07088 -11.87391 -11.38280 -11.15454 -10.55513 -10.53261 -10.41366 -9.84344 -9.33530 -8.18273 -6.26022 0.10285 0.26384 1.41983 1.43933 1.50443 2.11000 2.17693 2.42492 2.54635 2.90425 3.14465 3.17923 3.38205 3.69112 3.85390 4.09224 4.16488 4.21044 4.28575 4.36973 4.44999 4.62513 4.73614 4.74981 4.79369 4.85015 4.97144 5.04582 5.10588 5.30562 5.36635 5.49612 5.65251 5.65773 5.81178 6.01465 6.23033 6.51940 6.63544 6.85774 6.97108 6.98812 7.42631 8.92291 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.033051 B = 0.003229 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.972583 B = 8670.257411 C = 8941.744104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.125 3.875 3 H 0.094 0.906 4 N -0.693 5.693 5 C 0.080 3.920 6 C 0.020 3.980 7 H 0.123 0.877 8 C 0.266 3.734 9 N -0.518 5.518 10 C 0.038 3.962 11 C -0.539 4.539 12 H 0.054 0.946 13 C 0.012 3.988 14 N -0.923 5.923 15 Si 0.945 3.055 16 H -0.262 1.262 17 H -0.284 1.284 18 H -0.282 1.282 19 C -0.010 4.010 20 C -0.163 4.163 21 C 0.111 3.889 22 N -0.540 5.540 23 C 0.291 3.709 24 O -0.496 6.496 25 C -0.187 4.187 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.354 0.646 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.038 0.962 33 H -0.001 1.001 34 H 0.263 0.737 35 H 0.155 0.845 36 H 0.180 0.820 37 H 0.417 0.583 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.071 -3.030 17.849 19.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.015 3.985 3 H 0.112 0.888 4 N -0.325 5.325 5 C -0.050 4.050 6 C -0.002 4.002 7 H 0.141 0.859 8 C -0.050 4.050 9 N -0.196 5.196 10 C -0.001 4.001 11 C -0.577 4.577 12 H 0.073 0.927 13 C -0.187 4.187 14 N -0.563 5.563 15 Si 0.771 3.229 16 H -0.187 1.187 17 H -0.209 1.209 18 H -0.208 1.208 19 C -0.018 4.018 20 C -0.183 4.183 21 C -0.045 4.045 22 N -0.260 5.260 23 C 0.113 3.887 24 O -0.306 6.306 25 C -0.209 4.209 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.175 0.825 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.056 0.944 33 H 0.018 0.982 34 H 0.072 0.928 35 H 0.173 0.827 36 H 0.197 0.803 37 H 0.277 0.723 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -5.069 -3.712 19.099 20.106 hybrid contribution -0.458 0.453 -2.055 2.154 sum -5.527 -3.259 17.044 18.212 Atomic orbital electron populations 1.22424 0.93858 1.03430 1.03392 1.20443 0.94240 0.97277 0.86550 0.88792 1.60465 1.58347 1.10265 1.03428 1.21902 1.01207 0.94483 0.87412 1.19204 0.83414 1.01001 0.96551 0.85914 1.29407 0.95147 0.91020 0.89459 1.80979 1.14097 1.11783 1.12751 1.18986 0.97776 0.93548 0.89801 1.21554 1.45865 0.96914 0.93410 0.92738 1.25686 0.95351 0.95701 1.01960 1.70015 1.49579 1.11155 1.25580 0.85795 0.78719 0.79035 0.79306 1.18660 1.20905 1.20838 1.20337 0.93110 0.94043 0.94337 1.22164 1.01206 0.94954 0.99943 1.22915 0.93188 1.00971 0.87438 1.67147 1.18938 1.08634 1.31264 1.19328 0.96167 0.87016 0.86201 1.84708 1.32349 1.72797 1.40708 1.22112 1.03706 1.02470 0.92600 0.91263 0.91448 0.90873 0.82541 0.90710 0.91194 0.94365 0.98245 0.92759 0.82731 0.80294 0.72311 0.82996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 9.14 71.98 0.66 -1.56 16 2 C 0.12 2.06 2.82 44.17 0.12 2.19 16 3 H 0.09 1.57 7.70 -2.39 -0.02 1.55 16 4 N -0.69 -13.65 5.43 -495.43 -2.69 -16.34 16 5 C 0.08 1.89 4.85 86.30 0.42 2.31 16 6 C 0.02 0.65 2.35 -12.60 -0.03 0.62 16 7 H 0.12 3.44 8.14 -2.39 -0.02 3.42 16 8 C 0.27 10.37 13.67 89.45 1.22 11.60 16 9 N -0.52 -22.76 18.53 20.00 0.37 -22.39 16 10 C 0.04 1.64 4.42 29.85 0.13 1.77 16 11 C -0.54 -27.58 8.60 25.60 0.22 -27.36 16 12 H 0.05 2.75 7.59 -2.91 -0.02 2.73 16 13 C 0.01 0.64 5.46 84.65 0.46 1.10 16 14 N -0.92 -51.88 13.29 21.45 0.28 -51.60 16 15 Si 0.95 42.51 29.54 68.60 2.03 44.54 16 16 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 17 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 18 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 19 C -0.01 -0.18 4.98 -19.69 -0.10 -0.28 16 20 C -0.16 -2.96 9.42 22.37 0.21 -2.75 16 21 C 0.11 2.19 11.18 84.63 0.95 3.14 16 22 N -0.54 -13.22 10.39 -308.94 -3.21 -16.43 16 23 C 0.29 6.59 7.75 84.79 0.66 7.25 16 24 O -0.50 -9.78 13.56 -89.94 -1.22 -11.00 16 25 C -0.19 -3.68 9.71 22.47 0.22 -3.46 16 26 H 0.07 0.81 8.13 -2.39 -0.02 0.79 16 27 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.07 0.91 7.45 -2.39 -0.02 0.89 16 29 H 0.35 5.73 7.91 -89.69 -0.71 5.02 16 30 H 0.07 1.49 7.44 -2.39 -0.02 1.47 16 31 H 0.07 1.81 8.05 -2.38 -0.02 1.79 16 32 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.00 -0.04 8.14 -2.38 -0.02 -0.06 16 34 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 35 H 0.16 2.21 7.37 -2.91 -0.02 2.19 16 36 H 0.18 2.52 8.06 -2.91 -0.02 2.50 16 37 H 0.42 4.27 9.06 -74.06 -0.67 3.60 16 38 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -69.38 334.10 0.41 -68.97 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -0.29 Total: 9.68 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: 5.14 Total: -5.43 kcal Atomic # 7 Polarization: -101.52 SS G_CDS: -5.25 Total: -106.76 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: -1.22 Total: -11.00 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -69.38 0.41 -68.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567493856.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.207 kcal (2) G-P(sol) polarization free energy of solvation -69.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds