Wall clock time and date at job start Mon Mar 30 2020 02:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42890 * 114.00399 * 2 1 4 4 C 1.52998 * 109.47335 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47275 * 63.66957 * 4 3 2 6 6 C 1.36933 * 120.00093 * 266.86781 * 5 4 3 7 7 H 1.07998 * 119.99609 * 143.33724 * 6 5 4 8 8 C 1.38806 * 120.00250 * 323.33704 * 6 5 4 9 9 N 1.31625 * 120.00113 * 159.98945 * 8 6 5 10 10 Si 1.86799 * 119.99845 * 339.99662 * 8 6 5 11 11 H 1.48504 * 109.47586 * 95.25723 * 10 8 6 12 12 H 1.48503 * 109.46866 * 215.25183 * 10 8 6 13 13 H 1.48498 * 109.47134 * 335.25299 * 10 8 6 14 14 C 1.46503 * 119.99667 * 86.87041 * 5 4 3 15 15 C 1.50689 * 109.47433 * 90.00026 * 14 5 4 16 16 C 1.38777 * 119.77620 * 89.99625 * 15 14 5 17 17 C 1.36607 * 120.67120 * 179.97438 * 16 15 14 18 18 C 1.39737 * 119.88825 * 0.02562 * 17 16 15 19 19 N 1.35778 * 133.60228 * 179.97438 * 18 17 16 20 20 C 1.30116 * 109.64067 * 179.97438 * 19 18 17 21 21 N 1.36031 * 110.09984 * 359.78498 * 20 19 18 22 22 H 0.97004 * 126.35091 * 180.02562 * 21 20 19 23 23 C 1.38050 * 107.30215 * 0.34392 * 21 20 19 24 24 C 1.37854 * 119.77923 * 269.96734 * 15 14 5 25 25 H 1.08996 * 109.47588 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47394 * 300.00013 * 1 2 3 27 27 H 1.09003 * 109.46950 * 60.00424 * 1 2 3 28 28 H 1.09006 * 109.47396 * 59.99781 * 3 2 1 29 29 H 1.09003 * 109.47492 * 299.99979 * 3 2 1 30 30 H 1.09000 * 109.46993 * 303.66858 * 4 3 2 31 31 H 1.09007 * 109.47429 * 183.67286 * 4 3 2 32 32 H 0.96996 * 119.99599 * 179.97438 * 9 8 6 33 33 H 1.08999 * 109.47082 * 329.99645 * 14 5 4 34 34 H 1.09004 * 109.47099 * 210.00110 * 14 5 4 35 35 H 1.08004 * 119.66521 * 359.97438 * 16 15 14 36 36 H 1.08002 * 120.05134 * 179.97438 * 17 16 15 37 37 H 1.08007 * 124.94688 * 180.02562 * 20 19 18 38 38 H 1.07999 * 120.15089 * 0.02744 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3053 0.0000 4 6 3.5354 1.1845 0.0006 5 7 3.9744 0.5349 -1.2370 6 6 4.1571 -0.8217 -1.2706 7 1 3.8983 -1.3795 -2.1584 8 6 4.6751 -1.4800 -0.1638 9 7 4.4939 -2.7762 -0.0245 10 14 5.6292 -0.5261 1.1282 11 1 4.7160 -0.1412 2.2342 12 1 6.7235 -1.3757 1.6630 13 1 6.2066 0.6967 0.5147 14 6 4.2179 1.3370 -2.4385 15 6 5.6565 1.7848 -2.4606 16 6 6.6157 0.9923 -3.0753 17 6 7.9249 1.3808 -3.1065 18 6 8.3075 2.5873 -2.5144 19 7 9.4962 3.2302 -2.3826 20 6 9.3206 4.3461 -1.7369 21 7 8.0078 4.4981 -1.4145 22 1 7.6166 5.2441 -0.9334 23 6 7.3368 3.3904 -1.8925 24 6 6.0109 2.9792 -1.8706 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.6886 1.8464 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 3.8523 0.5880 0.8562 31 1 3.9787 2.1782 0.0665 32 1 4.8562 -3.2362 0.7488 33 1 3.5656 2.2102 -2.4309 34 1 4.0106 0.7365 -3.3244 35 1 6.3240 0.0588 -3.5337 36 1 8.6632 0.7560 -3.5873 37 1 10.1026 5.0510 -1.4958 38 1 5.2606 3.5923 -1.3936 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584333440.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:00 Heat of formation + Delta-G solvation = 60.487024 kcal Electronic energy + Delta-G solvation = -21431.923792 eV Core-core repulsion = 18276.532594 eV Total energy + Delta-G solvation = -3155.391198 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.73823 -37.84925 -37.01816 -35.14287 -32.87646 -31.63847 -30.33570 -29.54192 -28.39267 -25.76814 -25.60306 -23.15400 -22.42932 -21.81028 -21.09158 -20.09066 -17.76161 -16.78128 -16.50364 -15.97707 -15.52438 -15.07548 -14.92105 -14.67524 -14.24905 -13.95823 -13.81350 -13.49381 -13.28758 -12.73160 -12.49992 -11.99205 -11.64397 -11.41430 -11.30402 -11.12925 -10.96654 -10.78161 -10.56973 -10.39786 -10.28846 -9.76055 -9.71935 -9.47922 -8.92949 -8.45947 -7.96852 -7.67402 -6.85644 -5.87795 -3.28232 1.36216 1.99289 3.08252 3.14068 3.35950 3.53755 3.59029 4.28685 4.51490 4.53357 4.61559 4.92335 5.07158 5.43324 5.47314 5.56047 5.64314 5.69474 5.73945 5.75504 5.88849 5.90796 5.97133 6.06253 6.10913 6.18752 6.24197 6.25308 6.49070 6.55908 6.68707 6.83775 6.92557 7.23750 7.35457 7.53935 7.92393 8.10676 8.13438 8.45082 9.00712 9.79501 10.13432 11.27876 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.020643 B = 0.006059 C = 0.005533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.073686 B = 4620.189144 C = 5059.273140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.348 6.348 3 C 0.048 3.952 4 C 0.134 3.866 5 N -0.586 5.586 6 C -0.247 4.247 7 H 0.081 0.919 8 C 0.044 3.956 9 N -0.898 5.898 10 Si 0.872 3.128 11 H -0.289 1.289 12 H -0.304 1.304 13 H -0.266 1.266 14 C 0.181 3.819 15 C -0.056 4.056 16 C -0.099 4.099 17 C -0.072 4.072 18 C 0.028 3.972 19 N -0.497 5.497 20 C 0.239 3.761 21 N -0.608 5.608 22 H 0.418 0.582 23 C 0.049 3.951 24 C -0.124 4.124 25 H 0.079 0.921 26 H 0.026 0.974 27 H 0.030 0.970 28 H 0.029 0.971 29 H 0.038 0.962 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.261 0.739 33 H 0.048 0.952 34 H 0.068 0.932 35 H 0.132 0.868 36 H 0.123 0.877 37 H 0.209 0.791 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.467 15.209 -2.226 15.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.266 6.266 3 C -0.032 4.032 4 C 0.008 3.992 5 N -0.306 5.306 6 C -0.376 4.376 7 H 0.099 0.901 8 C -0.156 4.156 9 N -0.539 5.539 10 Si 0.703 3.297 11 H -0.218 1.218 12 H -0.233 1.233 13 H -0.191 1.191 14 C 0.055 3.945 15 C -0.061 4.061 16 C -0.119 4.119 17 C -0.091 4.091 18 C -0.089 4.089 19 N -0.217 5.217 20 C -0.048 4.048 21 N -0.221 5.221 22 H 0.256 0.744 23 C -0.060 4.060 24 C -0.146 4.146 25 H 0.097 0.903 26 H 0.044 0.956 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.056 0.944 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.150 0.850 36 H 0.141 0.859 37 H 0.226 0.774 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.371 14.459 -2.500 14.738 hybrid contribution -0.407 1.486 1.729 2.316 sum 0.964 15.946 -0.771 15.994 Atomic orbital electron populations 1.22650 0.83709 1.01938 0.98314 1.88290 1.16984 1.26499 1.94804 1.23222 0.97209 0.85108 0.97646 1.21290 0.90339 0.96349 0.91241 1.44131 1.75258 1.04309 1.06868 1.18650 1.36441 0.79870 1.02622 0.90143 1.25321 0.97611 0.94816 0.97873 1.69827 1.45909 1.08586 1.29606 0.87026 0.80092 0.80562 0.82032 1.21777 1.23281 1.19111 1.20047 0.88073 0.94491 0.91858 1.20887 0.99712 0.91486 0.93969 1.20666 0.91732 0.99667 0.99863 1.20006 0.96264 0.93497 0.99360 1.18967 0.88594 0.97295 1.04082 1.70337 1.25785 1.06116 1.19428 1.25131 0.84986 0.96924 0.97750 1.43075 1.08697 1.20083 1.50224 0.74422 1.18926 0.95270 0.89629 1.02148 1.19726 0.91455 0.98418 1.05030 0.90269 0.95574 0.95167 0.95337 0.94409 0.91884 0.93010 0.92929 0.93333 0.91419 0.84969 0.85944 0.77449 0.86914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.35 -7.56 10.27 -35.23 -0.36 -7.93 16 3 C 0.05 0.89 6.29 37.16 0.23 1.13 16 4 C 0.13 2.83 4.78 -4.04 -0.02 2.81 16 5 N -0.59 -13.26 2.05 -174.61 -0.36 -13.62 16 6 C -0.25 -6.71 9.57 -15.06 -0.14 -6.85 16 7 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 8 C 0.04 1.28 5.33 -17.43 -0.09 1.19 16 9 N -0.90 -27.70 13.97 55.49 0.78 -26.92 16 10 Si 0.87 22.92 24.83 -169.99 -4.22 18.69 16 11 H -0.29 -7.44 6.69 56.52 0.38 -7.06 16 12 H -0.30 -8.27 7.11 56.52 0.40 -7.87 16 13 H -0.27 -6.94 7.11 56.52 0.40 -6.54 16 14 C 0.18 3.38 5.79 -5.20 -0.03 3.35 16 15 C -0.06 -1.03 5.47 -104.57 -0.57 -1.60 16 16 C -0.10 -1.83 9.61 -39.97 -0.38 -2.22 16 17 C -0.07 -1.31 10.05 -39.61 -0.40 -1.71 16 18 C 0.03 0.51 7.23 -84.71 -0.61 -0.10 16 19 N -0.50 -8.43 11.27 -12.05 -0.14 -8.57 16 20 C 0.24 2.98 12.97 -89.78 -1.16 1.81 16 21 N -0.61 -7.58 6.23 -11.76 -0.07 -7.66 16 22 H 0.42 3.53 8.96 -40.82 -0.37 3.16 16 23 C 0.05 0.82 7.31 -83.99 -0.61 0.21 16 24 C -0.12 -2.11 9.71 -39.50 -0.38 -2.49 16 25 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 26 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 1.53 3.11 -51.93 -0.16 1.37 16 31 H 0.05 0.96 8.10 -51.93 -0.42 0.54 16 32 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 33 H 0.05 0.78 8.01 -51.93 -0.42 0.36 16 34 H 0.07 1.24 7.98 -51.93 -0.41 0.83 16 35 H 0.13 2.39 8.06 -52.48 -0.42 1.96 16 36 H 0.12 2.02 8.06 -52.49 -0.42 1.60 16 37 H 0.21 1.45 8.06 -52.48 -0.42 1.03 16 38 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 LS Contribution 320.12 15.07 4.82 4.82 Total: -1.00 -35.29 320.12 -7.78 -43.07 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -5.16 Total: 0.96 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -3.07 Total: -2.86 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: 0.21 Total: -56.77 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: -0.36 Total: -7.93 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -4.22 Total: 18.69 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -35.29 -7.78 -43.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584333440.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.558 kcal (2) G-P(sol) polarization free energy of solvation -35.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds