Wall clock time and date at job start Mon Mar 30 2020 02:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42890 * 114.00399 * 2 1 4 4 C 1.52998 * 109.47335 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47275 * 63.66957 * 4 3 2 6 6 C 1.36933 * 120.00093 * 266.86781 * 5 4 3 7 7 H 1.07998 * 119.99609 * 143.33724 * 6 5 4 8 8 C 1.38806 * 120.00250 * 323.33704 * 6 5 4 9 9 N 1.31625 * 120.00113 * 159.98945 * 8 6 5 10 10 Si 1.86799 * 119.99845 * 339.99662 * 8 6 5 11 11 H 1.48504 * 109.47586 * 95.25723 * 10 8 6 12 12 H 1.48503 * 109.46866 * 215.25183 * 10 8 6 13 13 H 1.48498 * 109.47134 * 335.25299 * 10 8 6 14 14 C 1.46503 * 119.99667 * 86.87041 * 5 4 3 15 15 C 1.50689 * 109.47433 * 90.00026 * 14 5 4 16 16 C 1.38777 * 119.77620 * 89.99625 * 15 14 5 17 17 C 1.36607 * 120.67120 * 179.97438 * 16 15 14 18 18 C 1.39737 * 119.88825 * 0.02562 * 17 16 15 19 19 N 1.35778 * 133.60228 * 179.97438 * 18 17 16 20 20 C 1.30116 * 109.64067 * 179.97438 * 19 18 17 21 21 N 1.36031 * 110.09984 * 359.78498 * 20 19 18 22 22 H 0.97004 * 126.35091 * 180.02562 * 21 20 19 23 23 C 1.38050 * 107.30215 * 0.34392 * 21 20 19 24 24 C 1.37854 * 119.77923 * 269.96734 * 15 14 5 25 25 H 1.08996 * 109.47588 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47394 * 300.00013 * 1 2 3 27 27 H 1.09003 * 109.46950 * 60.00424 * 1 2 3 28 28 H 1.09006 * 109.47396 * 59.99781 * 3 2 1 29 29 H 1.09003 * 109.47492 * 299.99979 * 3 2 1 30 30 H 1.09000 * 109.46993 * 303.66858 * 4 3 2 31 31 H 1.09007 * 109.47429 * 183.67286 * 4 3 2 32 32 H 0.96996 * 119.99599 * 179.97438 * 9 8 6 33 33 H 1.08999 * 109.47082 * 329.99645 * 14 5 4 34 34 H 1.09004 * 109.47099 * 210.00110 * 14 5 4 35 35 H 1.08004 * 119.66521 * 359.97438 * 16 15 14 36 36 H 1.08002 * 120.05134 * 179.97438 * 17 16 15 37 37 H 1.08007 * 124.94688 * 180.02562 * 20 19 18 38 38 H 1.07999 * 120.15089 * 0.02744 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3053 0.0000 4 6 3.5354 1.1845 0.0006 5 7 3.9744 0.5349 -1.2370 6 6 4.1571 -0.8217 -1.2706 7 1 3.8983 -1.3795 -2.1584 8 6 4.6751 -1.4800 -0.1638 9 7 4.4939 -2.7762 -0.0245 10 14 5.6292 -0.5261 1.1282 11 1 4.7160 -0.1412 2.2342 12 1 6.7235 -1.3757 1.6630 13 1 6.2066 0.6967 0.5147 14 6 4.2179 1.3370 -2.4385 15 6 5.6565 1.7848 -2.4606 16 6 6.6157 0.9923 -3.0753 17 6 7.9249 1.3808 -3.1065 18 6 8.3075 2.5873 -2.5144 19 7 9.4962 3.2302 -2.3826 20 6 9.3206 4.3461 -1.7369 21 7 8.0078 4.4981 -1.4145 22 1 7.6166 5.2441 -0.9334 23 6 7.3368 3.3904 -1.8925 24 6 6.0109 2.9792 -1.8706 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.6886 1.8464 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 3.8523 0.5880 0.8562 31 1 3.9787 2.1782 0.0665 32 1 4.8562 -3.2362 0.7488 33 1 3.5656 2.2102 -2.4309 34 1 4.0106 0.7365 -3.3244 35 1 6.3240 0.0588 -3.5337 36 1 8.6632 0.7560 -3.5873 37 1 10.1026 5.0510 -1.4958 38 1 5.2606 3.5923 -1.3936 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584333440.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:00 Heat of formation + Delta-G solvation = 36.255906 kcal Electronic energy + Delta-G solvation = -21432.974532 eV Core-core repulsion = 18276.532594 eV Total energy + Delta-G solvation = -3156.441938 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.91138 -39.33849 -38.41556 -36.77497 -34.12795 -33.62684 -31.75495 -30.83925 -29.93972 -27.25585 -27.09876 -24.74782 -23.78270 -23.24547 -22.30092 -21.63199 -18.91342 -18.71315 -17.84339 -17.54678 -17.11087 -16.42486 -16.27733 -16.08311 -15.75857 -15.52194 -15.19707 -14.80972 -14.69773 -14.45108 -14.23973 -13.67158 -13.06902 -13.00949 -12.73649 -12.59912 -12.50367 -12.26590 -12.24432 -11.94970 -11.67513 -11.61386 -11.41217 -10.92363 -10.58985 -10.32741 -9.25516 -8.98604 -8.72122 -8.07101 -5.41894 0.11385 0.64618 1.26715 1.41041 1.49170 1.94744 2.12792 2.47968 2.90983 3.16317 3.20011 3.46235 3.62591 3.82229 4.13569 4.35908 4.36498 4.38593 4.42603 4.47599 4.57528 4.62907 4.63557 4.67438 4.71362 4.81345 4.90334 4.91338 5.01708 5.15485 5.23223 5.51404 5.58578 5.83689 6.01994 6.07482 6.27593 6.60764 6.61343 6.98421 7.07760 7.73633 8.11685 9.13572 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.020643 B = 0.006059 C = 0.005533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.073686 B = 4620.189144 C = 5059.273140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.402 6.402 3 C 0.049 3.951 4 C 0.125 3.875 5 N -0.597 5.597 6 C -0.214 4.214 7 H 0.044 0.956 8 C -0.015 4.015 9 N -0.953 5.953 10 Si 0.934 3.066 11 H -0.282 1.282 12 H -0.325 1.325 13 H -0.259 1.259 14 C 0.185 3.815 15 C -0.078 4.078 16 C -0.113 4.113 17 C -0.091 4.091 18 C 0.007 3.993 19 N -0.546 5.546 20 C 0.271 3.729 21 N -0.591 5.591 22 H 0.440 0.560 23 C 0.035 3.965 24 C -0.112 4.112 25 H 0.075 0.925 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.031 0.969 31 H 0.086 0.914 32 H 0.255 0.745 33 H 0.085 0.915 34 H 0.059 0.941 35 H 0.121 0.879 36 H 0.125 0.875 37 H 0.266 0.734 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.520 19.724 -1.407 19.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.321 6.321 3 C -0.030 4.030 4 C 0.000 4.000 5 N -0.318 5.318 6 C -0.344 4.344 7 H 0.062 0.938 8 C -0.210 4.210 9 N -0.599 5.599 10 Si 0.766 3.234 11 H -0.210 1.210 12 H -0.255 1.255 13 H -0.184 1.184 14 C 0.061 3.939 15 C -0.082 4.082 16 C -0.134 4.134 17 C -0.111 4.111 18 C -0.110 4.110 19 N -0.267 5.267 20 C -0.017 4.017 21 N -0.205 5.205 22 H 0.282 0.718 23 C -0.075 4.075 24 C -0.134 4.134 25 H 0.094 0.906 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.049 0.951 31 H 0.104 0.896 32 H 0.064 0.936 33 H 0.103 0.897 34 H 0.078 0.922 35 H 0.139 0.861 36 H 0.143 0.857 37 H 0.281 0.719 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.397 19.076 -1.681 19.201 hybrid contribution -0.380 0.289 1.348 1.430 sum 1.017 19.366 -0.332 19.395 Atomic orbital electron populations 1.22796 0.81239 1.02481 1.00281 1.88209 1.19942 1.28635 1.95266 1.23214 0.95247 0.84500 1.00018 1.21432 0.92478 0.97045 0.89026 1.44151 1.76095 1.03034 1.08542 1.18460 1.33281 0.82187 1.00509 0.93837 1.25813 0.99556 0.95328 1.00270 1.69963 1.48831 1.10369 1.30730 0.86013 0.78203 0.78963 0.80207 1.20987 1.25530 1.18374 1.20071 0.89157 0.95019 0.89703 1.20781 0.98976 0.92780 0.95669 1.20686 0.92400 0.99650 1.00650 1.20108 0.96269 0.94412 1.00313 1.19260 0.90012 0.97549 1.04135 1.70352 1.25624 1.08313 1.22370 1.26279 0.85782 0.95761 0.93828 1.43077 1.08460 1.19491 1.49474 0.71761 1.19009 0.95115 0.90884 1.02518 1.19966 0.92302 0.97738 1.03379 0.90648 0.93207 0.93380 0.92443 0.92251 0.95078 0.89624 0.93608 0.89727 0.92239 0.86114 0.85727 0.71866 0.83963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 11.01 113.37 1.25 2.12 16 2 O -0.40 -16.97 10.27 -148.98 -1.53 -18.50 16 3 C 0.05 1.67 6.29 71.98 0.45 2.13 16 4 C 0.13 4.97 4.78 86.38 0.41 5.38 16 5 N -0.60 -26.44 2.05 -706.35 -1.45 -27.89 16 6 C -0.21 -11.93 9.57 84.03 0.80 -11.13 16 7 H 0.04 2.71 8.06 -2.91 -0.02 2.68 16 8 C -0.01 -0.87 5.33 84.86 0.45 -0.41 16 9 N -0.95 -61.66 13.97 21.65 0.30 -61.36 16 10 Si 0.93 48.78 24.83 68.60 1.70 50.49 16 11 H -0.28 -14.12 6.69 99.48 0.67 -13.46 16 12 H -0.33 -17.80 7.11 99.48 0.71 -17.10 16 13 H -0.26 -13.00 7.11 99.48 0.71 -12.29 16 14 C 0.19 6.61 5.79 85.63 0.50 7.10 16 15 C -0.08 -2.76 5.47 -19.83 -0.11 -2.86 16 16 C -0.11 -4.29 9.61 22.02 0.21 -4.08 16 17 C -0.09 -3.38 10.05 22.25 0.22 -3.16 16 18 C 0.01 0.26 7.23 39.45 0.29 0.55 16 19 N -0.55 -17.19 11.27 -192.04 -2.17 -19.35 16 20 C 0.27 5.46 12.97 180.06 2.33 7.80 16 21 N -0.59 -11.90 6.23 -191.13 -1.19 -13.09 16 22 H 0.44 4.92 8.96 -92.71 -0.83 4.09 16 23 C 0.03 1.06 7.31 38.86 0.28 1.34 16 24 C -0.11 -3.44 9.71 22.32 0.22 -3.22 16 25 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 26 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 29 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.03 1.46 3.11 -2.39 -0.01 1.45 16 31 H 0.09 2.77 8.10 -2.38 -0.02 2.75 16 32 H 0.25 15.91 8.31 -92.71 -0.77 15.14 16 33 H 0.08 2.40 8.01 -2.39 -0.02 2.38 16 34 H 0.06 2.19 7.98 -2.39 -0.02 2.17 16 35 H 0.12 4.66 8.06 -2.91 -0.02 4.64 16 36 H 0.12 4.31 8.06 -2.91 -0.02 4.29 16 37 H 0.27 1.95 8.06 -2.91 -0.02 1.92 16 38 H 0.14 3.44 8.06 -2.91 -0.02 3.41 16 Total: -1.00 -81.12 320.12 3.19 -77.93 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: 0.20 Total: 10.21 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: 7.31 Total: 1.56 kcal Atomic # 7 Polarization: -117.19 SS G_CDS: -4.50 Total: -121.69 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -1.53 Total: -18.50 kcal Atomic # 14 Polarization: 48.78 SS G_CDS: 1.70 Total: 50.49 kcal Total: -81.12 3.19 -77.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584333440.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.190 kcal (2) G-P(sol) polarization free energy of solvation -81.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds