Wall clock time and date at job start Mon Mar 30 2020 02:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 114.00062 * 2 1 4 4 C 1.52997 * 109.47214 * 179.97438 * 3 2 1 5 5 N 1.46897 * 109.46997 * 65.00000 * 4 3 2 6 6 C 1.46910 * 111.00037 * 66.04405 * 5 4 3 7 7 C 1.50700 * 109.47005 * 193.95185 * 6 5 4 8 8 H 1.07999 * 120.00409 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99569 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99965 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99825 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47066 * 90.00094 * 11 9 7 13 13 H 1.48498 * 109.47389 * 210.00122 * 11 9 7 14 14 H 1.48497 * 109.47443 * 330.00266 * 11 9 7 15 15 C 1.46898 * 111.00411 * 189.99726 * 5 4 3 16 16 C 1.50701 * 109.47513 * 169.99759 * 15 5 4 17 17 C 1.38356 * 119.44999 * 95.00216 * 16 15 5 18 18 C 1.38344 * 119.31253 * 180.02562 * 17 16 15 19 19 C 1.40066 * 118.28219 * 0.25653 * 18 17 16 20 20 C 1.43198 * 120.56441 * 179.74795 * 19 18 17 21 21 N 9.32312 * 126.41088 * 240.19583 * 2 1 3 22 22 C 1.39586 * 118.87067 * 359.49902 * 19 18 17 23 23 N 1.31705 * 120.55414 * 0.51154 * 22 19 18 24 24 H 1.09004 * 109.47046 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47219 * 299.99882 * 1 2 3 26 26 H 1.08996 * 109.47221 * 60.00117 * 1 2 3 27 27 H 1.08997 * 109.46932 * 59.99804 * 3 2 1 28 28 H 1.08998 * 109.46863 * 300.00063 * 3 2 1 29 29 H 1.08994 * 109.47338 * 305.00210 * 4 3 2 30 30 H 1.09002 * 109.47045 * 184.99733 * 4 3 2 31 31 H 1.09000 * 109.47041 * 313.95336 * 6 5 4 32 32 H 1.09001 * 109.46442 * 73.95319 * 6 5 4 33 33 H 0.97001 * 119.99583 * 179.97438 * 10 9 7 34 34 H 1.09003 * 109.46871 * 50.00062 * 15 5 4 35 35 H 1.08994 * 109.47236 * 290.00529 * 15 5 4 36 36 H 1.08002 * 120.34256 * 0.04596 * 17 16 15 37 37 H 1.08002 * 120.85636 * 179.97438 * 18 17 16 38 38 H 1.08000 * 119.72928 * 180.22307 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9779 0.5623 -1.2543 6 6 3.6968 1.4347 -2.4023 7 6 3.8391 0.6466 -3.6789 8 1 4.1107 -0.3980 -3.6412 9 6 3.6215 1.2589 -4.8949 10 7 3.2903 2.5308 -4.9408 11 14 3.7972 0.2818 -6.4773 12 1 2.4898 -0.3273 -6.8307 13 1 4.2340 1.1858 -7.5714 14 1 4.8075 -0.7899 -6.2878 15 6 5.4035 0.2133 -1.1949 16 6 5.7630 -0.6358 -2.3869 17 6 6.2927 -0.0351 -3.5151 18 6 6.6212 -0.8173 -4.6080 19 6 6.3965 -2.1975 -4.5278 20 6 6.7135 -3.0522 -5.6321 21 7 6.9630 -3.7293 -6.5106 22 6 5.8632 -2.7263 -3.3512 23 7 5.5669 -1.9394 -2.3375 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6886 1.8463 0.8899 28 1 1.6886 1.8463 -0.8900 29 1 3.8508 0.5685 0.8426 30 1 3.9784 2.1765 0.0902 31 1 2.6804 1.8208 -2.3250 32 1 4.4018 2.2660 -2.4080 33 1 3.1376 2.9616 -5.7963 34 1 5.6036 -0.3429 -0.2791 35 1 6.0014 1.1246 -1.2044 36 1 6.4484 1.0333 -3.5422 37 1 7.0358 -0.3744 -5.5015 38 1 5.6877 -3.7891 -3.2731 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618904935.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:30 Heat of formation + Delta-G solvation = 40.247673 kcal Electronic energy + Delta-G solvation = -21487.056572 eV Core-core repulsion = 18330.787730 eV Total energy + Delta-G solvation = -3156.268842 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.99477 -37.81380 -36.55009 -35.88932 -32.83040 -32.13262 -31.58507 -29.17411 -27.71288 -26.11905 -24.91156 -23.26480 -22.92525 -21.79819 -19.92588 -18.55495 -16.87632 -16.25416 -16.05209 -15.76669 -15.48618 -14.68828 -14.47040 -14.20636 -13.89200 -13.76607 -13.60316 -13.05955 -12.85783 -12.62411 -12.55984 -12.18935 -12.13375 -11.89302 -11.51377 -11.38245 -11.20078 -11.10901 -10.75346 -10.70492 -10.34000 -9.91718 -9.44221 -9.12633 -9.08818 -8.93765 -8.63267 -8.02388 -7.33456 -6.18909 -4.11383 1.12114 1.89355 2.91618 3.22176 3.30979 3.32963 3.37637 4.16915 4.24855 4.29843 4.39194 4.84390 4.94999 5.19617 5.24815 5.31236 5.47159 5.57414 5.66335 5.71127 5.76084 5.82880 5.86677 5.95143 6.02938 6.08622 6.16792 6.28641 6.32816 6.57810 6.62905 7.04444 7.13997 7.16676 7.62163 7.71005 7.73797 7.96012 8.04597 8.39642 8.54224 8.88711 9.44964 10.90470 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.015993 B = 0.006937 C = 0.005811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.369527 B = 4035.361259 C = 4817.651975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.369 6.369 3 C 0.066 3.934 4 C 0.061 3.939 5 N -0.520 5.520 6 C 0.183 3.817 7 C -0.494 4.494 8 H 0.073 0.927 9 C 0.064 3.936 10 N -0.890 5.890 11 Si 0.870 3.130 12 H -0.281 1.281 13 H -0.288 1.288 14 H -0.255 1.255 15 C 0.112 3.888 16 C 0.197 3.803 17 C -0.089 4.089 18 C -0.055 4.055 19 C -0.097 4.097 20 C 0.274 3.726 21 N -0.443 5.443 22 C 0.129 3.871 23 N -0.472 5.472 24 H 0.079 0.921 25 H 0.030 0.970 26 H 0.038 0.962 27 H 0.040 0.960 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.039 0.961 31 H 0.035 0.965 32 H -0.006 1.006 33 H 0.262 0.738 34 H 0.078 0.922 35 H 0.042 0.958 36 H 0.141 0.859 37 H 0.129 0.871 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.472 -1.159 8.724 9.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.288 6.288 3 C -0.011 4.011 4 C -0.068 4.068 5 N -0.245 5.245 6 C 0.058 3.942 7 C -0.532 4.532 8 H 0.091 0.909 9 C -0.139 4.139 10 N -0.528 5.528 11 Si 0.698 3.302 12 H -0.207 1.207 13 H -0.214 1.214 14 H -0.179 1.179 15 C -0.017 4.017 16 C 0.057 3.943 17 C -0.110 4.110 18 C -0.082 4.082 19 C -0.104 4.104 20 C -0.041 4.041 21 N -0.119 5.119 22 C -0.030 4.030 23 N -0.181 5.181 24 H 0.098 0.902 25 H 0.049 0.951 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.012 0.988 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.060 0.940 36 H 0.159 0.841 37 H 0.147 0.853 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.307 -3.016 7.938 8.799 hybrid contribution 0.126 1.331 -1.621 2.101 sum 2.433 -1.685 6.317 6.976 Atomic orbital electron populations 1.22650 0.82485 1.02064 0.99195 1.88011 1.18199 1.27406 1.95143 1.22608 0.93860 0.85033 0.99553 1.21994 0.93531 0.97409 0.93847 1.62032 1.14043 1.45699 1.02767 1.19942 0.96754 0.90474 0.87027 1.21467 1.44698 0.97239 0.89752 0.90885 1.24867 0.95390 0.94696 0.98938 1.69943 1.46789 1.10271 1.25843 0.86934 0.79421 0.80608 0.83273 1.20736 1.21362 1.17897 1.20801 0.90297 0.95955 0.94626 1.20994 0.88947 0.89766 0.94612 1.21672 0.95912 1.00941 0.92446 1.21260 0.97321 0.91109 0.98527 1.16922 1.09252 0.92333 0.91849 1.25706 0.92741 0.92855 0.92772 1.81199 1.10409 1.09917 1.10353 1.22552 0.93686 0.99579 0.87187 1.67495 1.15860 1.05451 1.29279 0.90236 0.95146 0.94293 0.94237 0.92369 0.90986 0.94290 0.94673 0.98832 0.92806 0.90339 0.93989 0.84144 0.85300 0.83036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 101.05 1.11 1.58 16 2 O -0.37 -6.60 10.65 -35.23 -0.38 -6.97 16 3 C 0.07 1.08 6.02 37.16 0.22 1.30 16 4 C 0.06 0.98 5.34 -3.83 -0.02 0.96 16 5 N -0.52 -10.17 4.51 -237.52 -1.07 -11.24 16 6 C 0.18 4.18 4.55 -4.97 -0.02 4.16 16 7 C -0.49 -12.12 5.76 -34.44 -0.20 -12.32 16 8 H 0.07 1.82 4.93 -52.49 -0.26 1.56 16 9 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 10 N -0.89 -24.12 13.29 55.43 0.74 -23.38 16 11 Si 0.87 20.26 28.76 -169.99 -4.89 15.37 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 13 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.25 -5.59 5.24 56.52 0.30 -5.29 16 15 C 0.11 1.91 5.27 -4.98 -0.03 1.88 16 16 C 0.20 3.56 4.01 -82.51 -0.33 3.23 16 17 C -0.09 -1.57 6.27 -39.50 -0.25 -1.82 16 18 C -0.05 -0.93 7.50 -38.86 -0.29 -1.22 16 19 C -0.10 -1.65 5.48 -106.78 -0.59 -2.23 16 20 C 0.27 4.75 15.37 -22.45 -0.35 4.40 16 21 N -0.44 -8.19 18.54 41.87 0.78 -7.41 16 22 C 0.13 2.14 10.92 -17.10 -0.19 1.95 16 23 N -0.47 -8.61 10.14 -9.12 -0.09 -8.71 16 24 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 25 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 1.06 6.12 -51.93 -0.32 0.74 16 29 H 0.07 1.06 7.93 -51.93 -0.41 0.65 16 30 H 0.04 0.58 8.12 -51.93 -0.42 0.16 16 31 H 0.04 0.88 5.91 -51.93 -0.31 0.58 16 32 H -0.01 -0.14 7.99 -51.93 -0.41 -0.56 16 33 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 34 H 0.08 1.21 7.93 -51.93 -0.41 0.80 16 35 H 0.04 0.66 7.91 -51.93 -0.41 0.25 16 36 H 0.14 2.45 7.99 -52.49 -0.42 2.03 16 37 H 0.13 2.02 8.06 -52.49 -0.42 1.59 16 38 H 0.15 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 320.14 15.07 4.82 4.82 Total: -1.00 -29.21 320.14 -6.26 -35.47 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -5.15 Total: -1.36 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -1.02 Total: 3.41 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: 0.35 Total: -50.74 kcal Atomic # 8 Polarization: -6.60 SS G_CDS: -0.38 Total: -6.97 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.89 Total: 15.37 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.21 -6.26 -35.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618904935.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.713 kcal (2) G-P(sol) polarization free energy of solvation -29.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds