Wall clock time and date at job start Mon Mar 30 2020 02:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 114.00062 * 2 1 4 4 C 1.52997 * 109.47214 * 179.97438 * 3 2 1 5 5 N 1.46897 * 109.46997 * 65.00000 * 4 3 2 6 6 C 1.46910 * 111.00037 * 66.04405 * 5 4 3 7 7 C 1.50700 * 109.47005 * 193.95185 * 6 5 4 8 8 H 1.07999 * 120.00409 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99569 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99965 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99825 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47066 * 90.00094 * 11 9 7 13 13 H 1.48498 * 109.47389 * 210.00122 * 11 9 7 14 14 H 1.48497 * 109.47443 * 330.00266 * 11 9 7 15 15 C 1.46898 * 111.00411 * 189.99726 * 5 4 3 16 16 C 1.50701 * 109.47513 * 169.99759 * 15 5 4 17 17 C 1.38356 * 119.44999 * 95.00216 * 16 15 5 18 18 C 1.38344 * 119.31253 * 180.02562 * 17 16 15 19 19 C 1.40066 * 118.28219 * 0.25653 * 18 17 16 20 20 C 1.43198 * 120.56441 * 179.74795 * 19 18 17 21 21 N 9.32312 * 126.41088 * 240.19583 * 2 1 3 22 22 C 1.39586 * 118.87067 * 359.49902 * 19 18 17 23 23 N 1.31705 * 120.55414 * 0.51154 * 22 19 18 24 24 H 1.09004 * 109.47046 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47219 * 299.99882 * 1 2 3 26 26 H 1.08996 * 109.47221 * 60.00117 * 1 2 3 27 27 H 1.08997 * 109.46932 * 59.99804 * 3 2 1 28 28 H 1.08998 * 109.46863 * 300.00063 * 3 2 1 29 29 H 1.08994 * 109.47338 * 305.00210 * 4 3 2 30 30 H 1.09002 * 109.47045 * 184.99733 * 4 3 2 31 31 H 1.09000 * 109.47041 * 313.95336 * 6 5 4 32 32 H 1.09001 * 109.46442 * 73.95319 * 6 5 4 33 33 H 0.97001 * 119.99583 * 179.97438 * 10 9 7 34 34 H 1.09003 * 109.46871 * 50.00062 * 15 5 4 35 35 H 1.08994 * 109.47236 * 290.00529 * 15 5 4 36 36 H 1.08002 * 120.34256 * 0.04596 * 17 16 15 37 37 H 1.08002 * 120.85636 * 179.97438 * 18 17 16 38 38 H 1.08000 * 119.72928 * 180.22307 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9779 0.5623 -1.2543 6 6 3.6968 1.4347 -2.4023 7 6 3.8391 0.6466 -3.6789 8 1 4.1107 -0.3980 -3.6412 9 6 3.6215 1.2589 -4.8949 10 7 3.2903 2.5308 -4.9408 11 14 3.7972 0.2818 -6.4773 12 1 2.4898 -0.3273 -6.8307 13 1 4.2340 1.1858 -7.5714 14 1 4.8075 -0.7899 -6.2878 15 6 5.4035 0.2133 -1.1949 16 6 5.7630 -0.6358 -2.3869 17 6 6.2927 -0.0351 -3.5151 18 6 6.6212 -0.8173 -4.6080 19 6 6.3965 -2.1975 -4.5278 20 6 6.7135 -3.0522 -5.6321 21 7 6.9630 -3.7293 -6.5106 22 6 5.8632 -2.7263 -3.3512 23 7 5.5669 -1.9394 -2.3375 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6886 1.8463 0.8899 28 1 1.6886 1.8463 -0.8900 29 1 3.8508 0.5685 0.8426 30 1 3.9784 2.1765 0.0902 31 1 2.6804 1.8208 -2.3250 32 1 4.4018 2.2660 -2.4080 33 1 3.1376 2.9616 -5.7963 34 1 5.6036 -0.3429 -0.2791 35 1 6.0014 1.1246 -1.2044 36 1 6.4484 1.0333 -3.5422 37 1 7.0358 -0.3744 -5.5015 38 1 5.6877 -3.7891 -3.2731 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000618904935.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:30 Heat of formation + Delta-G solvation = 20.636364 kcal Electronic energy + Delta-G solvation = -21487.906983 eV Core-core repulsion = 18330.787730 eV Total energy + Delta-G solvation = -3157.119252 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.38438 -39.15466 -37.93948 -37.31150 -34.68229 -33.52974 -32.96797 -30.54201 -29.42268 -27.35349 -26.32119 -24.73114 -24.52276 -23.13397 -21.40787 -19.93458 -18.69128 -17.60766 -17.38698 -17.12987 -16.88598 -16.42777 -15.72842 -15.63536 -15.30645 -15.15947 -15.10244 -14.48535 -14.25812 -14.03505 -13.97547 -13.88892 -13.58542 -13.32032 -13.00176 -12.80946 -12.76530 -12.47332 -12.35979 -12.31723 -11.80733 -11.48814 -11.24554 -10.60998 -10.51688 -10.35780 -10.31090 -9.51247 -8.84908 -8.14355 -6.10374 -0.25256 0.53078 1.34126 1.43733 1.47636 1.54134 1.95639 2.40440 2.79856 2.97574 3.07959 3.23474 3.54094 3.55973 3.93756 3.96949 4.24567 4.31284 4.38946 4.50156 4.55186 4.62135 4.63079 4.73902 4.80463 4.85915 4.92480 4.95968 5.04738 5.21046 5.23523 5.33612 5.37692 5.73457 5.80368 6.16305 6.36441 6.43302 6.46024 6.73382 6.97079 7.16868 7.50151 8.95597 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.015993 B = 0.006937 C = 0.005811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.369527 B = 4035.361259 C = 4817.651975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.398 6.398 3 C 0.067 3.933 4 C 0.058 3.942 5 N -0.535 5.535 6 C 0.199 3.801 7 C -0.485 4.485 8 H 0.072 0.928 9 C 0.027 3.973 10 N -0.925 5.925 11 Si 0.909 3.091 12 H -0.297 1.297 13 H -0.291 1.291 14 H -0.235 1.235 15 C 0.110 3.890 16 C 0.188 3.812 17 C -0.100 4.100 18 C -0.052 4.052 19 C -0.102 4.102 20 C 0.289 3.711 21 N -0.462 5.462 22 C 0.138 3.862 23 N -0.487 5.487 24 H 0.091 0.909 25 H 0.057 0.943 26 H 0.027 0.973 27 H 0.073 0.927 28 H 0.030 0.970 29 H 0.092 0.908 30 H 0.053 0.947 31 H 0.008 0.992 32 H -0.021 1.021 33 H 0.259 0.741 34 H 0.098 0.902 35 H 0.056 0.944 36 H 0.138 0.862 37 H 0.142 0.858 38 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.068 -2.254 9.834 10.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.318 6.318 3 C -0.010 4.010 4 C -0.069 4.069 5 N -0.260 5.260 6 C 0.073 3.927 7 C -0.524 4.524 8 H 0.090 0.910 9 C -0.172 4.172 10 N -0.567 5.567 11 Si 0.737 3.263 12 H -0.225 1.225 13 H -0.217 1.217 14 H -0.158 1.158 15 C -0.019 4.019 16 C 0.048 3.952 17 C -0.120 4.120 18 C -0.079 4.079 19 C -0.109 4.109 20 C -0.025 4.025 21 N -0.138 5.138 22 C -0.022 4.022 23 N -0.195 5.195 24 H 0.110 0.890 25 H 0.075 0.925 26 H 0.046 0.954 27 H 0.091 0.909 28 H 0.048 0.952 29 H 0.111 0.889 30 H 0.071 0.929 31 H 0.026 0.974 32 H -0.004 1.004 33 H 0.068 0.932 34 H 0.116 0.884 35 H 0.074 0.926 36 H 0.156 0.844 37 H 0.160 0.840 38 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 2.920 -4.125 9.069 10.382 hybrid contribution -0.038 1.589 -1.874 2.458 sum 2.882 -2.535 7.195 8.155 Atomic orbital electron populations 1.22811 0.80825 1.03177 0.99938 1.87950 1.20196 1.28285 1.95322 1.22637 0.93956 0.84655 0.99728 1.22130 0.93594 0.98420 0.92788 1.61931 1.15821 1.45227 1.03058 1.19587 0.94723 0.90228 0.88123 1.21633 1.43350 0.97054 0.90327 0.91017 1.25333 0.95803 0.95095 1.00965 1.70030 1.49148 1.11545 1.25946 0.86326 0.78893 0.80098 0.81031 1.22471 1.21675 1.15820 1.20917 0.89074 0.96656 0.95204 1.21215 0.88827 0.90042 0.95078 1.21707 0.96606 1.00986 0.92738 1.21507 0.96306 0.91318 0.98780 1.16950 1.09718 0.92181 0.92005 1.25618 0.92121 0.92393 0.92404 1.81228 1.11153 1.10541 1.10926 1.23036 0.91976 1.00769 0.86421 1.67563 1.16371 1.05616 1.29994 0.89023 0.92479 0.95410 0.90932 0.95208 0.88943 0.92857 0.97392 1.00364 0.93192 0.88375 0.92627 0.84387 0.83971 0.80224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 11.01 113.37 1.25 2.02 16 2 O -0.40 -13.76 10.65 -148.98 -1.59 -15.35 16 3 C 0.07 2.10 6.02 71.98 0.43 2.54 16 4 C 0.06 1.79 5.34 86.30 0.46 2.25 16 5 N -0.54 -20.31 4.51 -905.36 -4.08 -24.40 16 6 C 0.20 9.16 4.55 85.56 0.39 9.55 16 7 C -0.49 -23.75 5.76 25.60 0.15 -23.60 16 8 H 0.07 3.50 4.93 -2.91 -0.01 3.48 16 9 C 0.03 1.38 5.46 84.65 0.46 1.84 16 10 N -0.93 -51.08 13.29 21.45 0.28 -50.80 16 11 Si 0.91 41.35 28.76 68.60 1.97 43.32 16 12 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 13 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 14 H -0.24 -9.74 5.24 99.48 0.52 -9.21 16 15 C 0.11 3.54 5.27 85.56 0.45 3.99 16 16 C 0.19 6.47 4.01 42.58 0.17 6.64 16 17 C -0.10 -3.39 6.27 22.32 0.14 -3.25 16 18 C -0.05 -1.66 7.50 22.74 0.17 -1.49 16 19 C -0.10 -3.21 5.48 -21.26 -0.12 -3.33 16 20 C 0.29 9.31 15.37 88.32 1.36 10.67 16 21 N -0.46 -16.12 18.54 19.01 0.35 -15.76 16 22 C 0.14 4.18 10.92 85.04 0.93 5.11 16 23 N -0.49 -16.64 10.14 -182.76 -1.85 -18.50 16 24 H 0.09 2.16 8.14 -2.38 -0.02 2.15 16 25 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.03 1.10 6.12 -2.39 -0.01 1.08 16 29 H 0.09 2.47 7.93 -2.39 -0.02 2.45 16 30 H 0.05 1.49 8.12 -2.39 -0.02 1.47 16 31 H 0.01 0.42 5.91 -2.39 -0.01 0.40 16 32 H -0.02 -1.03 7.99 -2.39 -0.02 -1.05 16 33 H 0.26 13.88 8.31 -92.71 -0.77 13.10 16 34 H 0.10 2.77 7.93 -2.39 -0.02 2.75 16 35 H 0.06 1.64 7.91 -2.39 -0.02 1.62 16 36 H 0.14 4.72 7.99 -2.91 -0.02 4.70 16 37 H 0.14 4.14 8.06 -2.91 -0.02 4.11 16 38 H 0.18 4.33 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -61.83 320.14 2.21 -59.62 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: 0.88 Total: 8.92 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: 6.24 Total: 12.94 kcal Atomic # 7 Polarization: -104.16 SS G_CDS: -5.30 Total: -109.46 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: -1.59 Total: -15.35 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 1.97 Total: 43.32 kcal Total: -61.83 2.21 -59.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618904935.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.253 kcal (2) G-P(sol) polarization free energy of solvation -61.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds