Wall clock time and date at job start Mon Mar 30 2020 02:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36937 * 120.00226 * 2 1 4 4 H 1.07997 * 119.99985 * 200.07941 * 3 2 1 5 5 C 1.38817 * 119.99968 * 20.08283 * 3 2 1 6 6 N 1.31621 * 119.99945 * 14.93398 * 5 3 2 7 7 Si 1.86791 * 119.99863 * 194.93317 * 5 3 2 8 8 H 1.48496 * 109.47547 * 59.99968 * 7 5 3 9 9 H 1.48505 * 109.47052 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47080 * 299.99644 * 7 5 3 11 11 C 1.46505 * 119.99625 * 180.02562 * 2 1 3 12 12 N 1.46503 * 109.46901 * 269.99641 * 11 2 1 13 13 C 1.46754 * 124.35145 * 270.00489 * 12 11 2 14 14 C 1.54485 * 105.47438 * 163.00582 * 13 12 11 15 15 H 1.08996 * 110.96730 * 267.29113 * 14 13 12 16 16 C 1.50702 * 110.96817 * 143.53490 * 14 13 12 17 17 C 1.38231 * 119.61905 * 323.33094 * 16 14 13 18 18 C 1.38626 * 119.15951 * 179.71624 * 17 16 14 19 19 C 1.38671 * 118.42054 * 0.54545 * 18 17 16 20 20 C 1.38180 * 119.16482 * 359.74216 * 19 18 17 21 21 N 1.31853 * 119.61655 * 143.60822 * 16 14 13 22 22 C 1.54472 * 101.83400 * 25.22073 * 14 13 12 23 23 C 1.34414 * 124.34537 * 90.02389 * 12 11 2 24 24 O 1.21281 * 124.94738 * 0.35307 * 23 12 11 25 25 H 1.08994 * 109.47129 * 275.06454 * 1 2 3 26 26 H 1.09004 * 109.46756 * 35.05920 * 1 2 3 27 27 H 1.08997 * 109.47309 * 155.06124 * 1 2 3 28 28 H 0.96997 * 119.99856 * 180.02562 * 6 5 3 29 29 H 1.09004 * 109.46733 * 150.00082 * 11 2 1 30 30 H 1.08994 * 109.47254 * 29.99947 * 11 2 1 31 31 H 1.09001 * 110.24670 * 282.00832 * 13 12 11 32 32 H 1.09005 * 110.24950 * 44.00078 * 13 12 11 33 33 H 1.08005 * 120.41448 * 359.97438 * 17 16 14 34 34 H 1.07996 * 120.78754 * 180.25721 * 18 17 16 35 35 H 1.08004 * 120.41873 * 179.75051 * 19 18 17 36 36 H 1.08001 * 119.61827 * 180.02562 * 20 19 18 37 37 H 1.09001 * 110.54044 * 216.75788 * 22 14 13 38 38 H 1.08998 * 110.35853 * 94.16605 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1805 1.2143 -0.3211 5 6 1.5190 2.3515 0.4128 6 7 0.3825 2.2863 1.0735 7 14 2.2832 4.0126 0.0307 8 1 2.4077 4.1737 -1.4403 9 1 1.4201 5.0915 0.5750 10 1 3.6291 4.0932 0.6531 11 6 2.1975 -1.2688 -0.0006 12 7 2.4417 -1.6923 1.3805 13 6 3.6289 -1.3258 2.1614 14 6 3.2574 -1.6092 3.6339 15 1 2.8532 -0.7173 4.1127 16 6 4.4444 -2.1376 4.3974 17 6 5.3361 -2.9880 3.7710 18 6 6.4279 -3.4638 4.4806 19 6 6.5763 -3.0738 5.8030 20 6 5.6408 -2.2257 6.3641 21 7 4.6172 -1.7879 5.6569 22 6 2.1663 -2.6921 3.4825 23 6 1.6071 -2.4667 2.0950 24 8 0.5563 -2.9153 1.6884 25 1 -0.3633 0.0907 1.0236 26 1 -0.3633 0.8413 -0.5903 27 1 -0.3634 -0.9318 -0.4333 28 1 -0.0584 3.1008 1.3616 29 1 3.1499 -1.1382 -0.5144 30 1 1.6084 -2.0282 -0.5147 31 1 4.4804 -1.9374 1.8627 32 1 3.8575 -0.2686 2.0267 33 1 5.1864 -3.2748 2.7405 34 1 7.1432 -4.1261 4.0159 35 1 7.4128 -3.4284 6.3871 36 1 5.7495 -1.9170 7.3933 37 1 1.3880 -2.5585 4.2339 38 1 2.6058 -3.6866 3.5599 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733295044.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:26 Heat of formation + Delta-G solvation = 35.825192 kcal Electronic energy + Delta-G solvation = -21310.182078 eV Core-core repulsion = 18153.721463 eV Total energy + Delta-G solvation = -3156.460615 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.64858 -39.31479 -35.95389 -35.43595 -32.90035 -32.45223 -31.05024 -29.64684 -27.05461 -26.01175 -25.49598 -23.83202 -23.25194 -21.31452 -20.67317 -18.83027 -17.19452 -16.78314 -16.60173 -15.96417 -15.52639 -15.30258 -14.87915 -14.33991 -14.10706 -13.66990 -13.44694 -13.18072 -13.16016 -12.93858 -12.75117 -12.35227 -11.83686 -11.62269 -11.33333 -11.20277 -10.92523 -10.84123 -10.70931 -10.35903 -10.08142 -9.99080 -9.97884 -9.50913 -9.28406 -8.92056 -8.63086 -8.02992 -6.99348 -5.79958 -3.27596 0.98646 1.17938 3.23739 3.33847 3.40862 3.41303 3.66723 3.84758 4.15161 4.44082 4.56931 4.71085 4.89683 4.91714 4.97872 5.06014 5.21900 5.38000 5.44170 5.51624 5.56610 5.72970 5.82900 5.91612 5.95386 6.05630 6.12349 6.23407 6.33409 6.41504 6.59207 6.86615 7.26970 7.44020 7.70148 7.81747 7.91933 7.94429 8.29305 8.91251 9.13218 9.75497 10.24302 11.23082 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.018829 B = 0.005324 C = 0.004591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.740278 B = 5257.521757 C = 6096.802730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.583 5.583 3 C -0.270 4.270 4 H 0.071 0.929 5 C 0.010 3.990 6 N -0.896 5.896 7 Si 0.905 3.095 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.282 1.282 11 C 0.357 3.643 12 N -0.612 5.612 13 C 0.110 3.890 14 C -0.054 4.054 15 H 0.109 0.891 16 C 0.153 3.847 17 C -0.170 4.170 18 C -0.073 4.073 19 C -0.184 4.184 20 C 0.101 3.899 21 N -0.480 5.480 22 C -0.143 4.143 23 C 0.517 3.483 24 O -0.546 6.546 25 H 0.031 0.969 26 H 0.044 0.956 27 H 0.005 0.995 28 H 0.255 0.745 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.140 0.860 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.154 0.846 37 H 0.097 0.903 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.502 -10.801 6.921 17.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.304 5.304 3 C -0.399 4.399 4 H 0.089 0.911 5 C -0.190 4.190 6 N -0.539 5.539 7 Si 0.735 3.265 8 H -0.209 1.209 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.149 3.851 12 N -0.351 5.351 13 C -0.015 4.015 14 C -0.074 4.074 15 H 0.127 0.873 16 C 0.015 3.985 17 C -0.189 4.189 18 C -0.099 4.099 19 C -0.203 4.203 20 C -0.056 4.056 21 N -0.188 5.188 22 C -0.184 4.184 23 C 0.303 3.697 24 O -0.424 6.424 25 H 0.049 0.951 26 H 0.063 0.937 27 H 0.023 0.977 28 H 0.065 0.935 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.157 0.843 34 H 0.151 0.849 35 H 0.150 0.850 36 H 0.172 0.828 37 H 0.116 0.884 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 11.179 -10.251 6.997 16.703 hybrid contribution 1.157 0.532 -0.176 1.285 sum 12.335 -9.719 6.822 17.122 Atomic orbital electron populations 1.20831 0.81912 0.95757 0.99746 1.44775 1.02740 1.01234 1.81657 1.19170 0.97119 0.84815 1.38828 0.91078 1.25047 0.97576 0.98554 0.97864 1.70114 1.18216 1.27172 1.38408 0.86342 0.78388 0.83607 0.78191 1.20905 1.21558 1.20864 1.21232 0.95832 0.87492 0.80514 1.50624 1.20084 1.48455 1.15948 1.22158 0.88913 1.02237 0.88242 1.20974 0.91898 0.99579 0.94966 0.87272 1.20977 0.94665 0.92726 0.90160 1.22052 0.95710 0.99303 1.01861 1.21574 0.96771 0.97436 0.94144 1.22119 1.01291 1.00584 0.96345 1.22758 0.89650 0.93465 0.99720 1.67506 1.21248 1.22969 1.07113 1.22397 0.98876 0.99369 0.97797 1.20696 0.83858 0.78103 0.87058 1.90656 1.22465 1.53626 1.75647 0.95085 0.93727 0.97683 0.93454 0.91416 0.91420 0.91880 0.89439 0.84277 0.84890 0.85001 0.82839 0.88415 0.88890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.23 9.02 59.85 0.54 4.77 16 2 N -0.58 -14.64 3.17 -184.85 -0.59 -15.22 16 3 C -0.27 -7.14 9.68 -15.06 -0.15 -7.29 16 4 H 0.07 1.80 7.86 -52.49 -0.41 1.38 16 5 C 0.01 0.26 5.07 -17.43 -0.09 0.18 16 6 N -0.90 -26.07 10.65 55.49 0.59 -25.48 16 7 Si 0.91 21.38 29.58 -169.99 -5.03 16.35 16 8 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 9 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 C 0.36 7.38 6.50 -63.74 -0.41 6.97 16 12 N -0.61 -11.74 3.17 -176.12 -0.56 -12.30 16 13 C 0.11 1.75 6.79 -3.12 -0.02 1.73 16 14 C -0.05 -0.83 3.50 -90.22 -0.32 -1.14 16 15 H 0.11 1.87 8.14 -51.93 -0.42 1.44 16 16 C 0.15 2.04 5.81 -82.58 -0.48 1.56 16 17 C -0.17 -1.86 8.88 -39.44 -0.35 -2.21 16 18 C -0.07 -0.66 10.18 -39.28 -0.40 -1.06 16 19 C -0.18 -1.61 10.11 -39.44 -0.40 -2.01 16 20 C 0.10 1.08 11.18 -17.55 -0.20 0.88 16 21 N -0.48 -6.64 10.27 -9.47 -0.10 -6.74 16 22 C -0.14 -2.23 6.40 -26.82 -0.17 -2.41 16 23 C 0.52 10.30 8.02 -10.86 -0.09 10.21 16 24 O -0.55 -12.86 17.59 5.56 0.10 -12.76 16 25 H 0.03 0.90 7.41 -51.93 -0.38 0.51 16 26 H 0.04 1.21 7.19 -51.93 -0.37 0.84 16 27 H 0.00 0.11 7.84 -51.93 -0.41 -0.29 16 28 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.07 1.25 8.03 -51.93 -0.42 0.84 16 30 H 0.07 1.38 7.64 -51.93 -0.40 0.99 16 31 H 0.06 0.82 5.62 -51.93 -0.29 0.52 16 32 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 33 H 0.14 1.35 6.38 -52.48 -0.34 1.02 16 34 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 35 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 36 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 37 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 38 H 0.09 1.25 7.78 -51.93 -0.40 0.84 16 LS Contribution 319.54 15.07 4.82 4.82 Total: -1.00 -32.87 319.54 -8.39 -41.26 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -5.09 Total: -0.10 kcal Atomic # 6 Polarization: 12.70 SS G_CDS: -2.53 Total: 10.17 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: -0.65 Total: -59.73 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.10 Total: -12.76 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.87 -8.39 -41.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733295044.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.084 kcal (2) G-P(sol) polarization free energy of solvation -32.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds