Wall clock time and date at job start Mon Mar 30 2020 02:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36937 * 120.00226 * 2 1 4 4 H 1.07997 * 119.99985 * 200.07941 * 3 2 1 5 5 C 1.38817 * 119.99968 * 20.08283 * 3 2 1 6 6 N 1.31621 * 119.99945 * 14.93398 * 5 3 2 7 7 Si 1.86791 * 119.99863 * 194.93317 * 5 3 2 8 8 H 1.48496 * 109.47547 * 59.99968 * 7 5 3 9 9 H 1.48505 * 109.47052 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47080 * 299.99644 * 7 5 3 11 11 C 1.46505 * 119.99625 * 180.02562 * 2 1 3 12 12 N 1.46503 * 109.46901 * 269.99641 * 11 2 1 13 13 C 1.46754 * 124.35145 * 270.00489 * 12 11 2 14 14 C 1.54485 * 105.47438 * 163.00582 * 13 12 11 15 15 H 1.08996 * 110.96730 * 267.29113 * 14 13 12 16 16 C 1.50702 * 110.96817 * 143.53490 * 14 13 12 17 17 C 1.38231 * 119.61905 * 323.33094 * 16 14 13 18 18 C 1.38626 * 119.15951 * 179.71624 * 17 16 14 19 19 C 1.38671 * 118.42054 * 0.54545 * 18 17 16 20 20 C 1.38180 * 119.16482 * 359.74216 * 19 18 17 21 21 N 1.31853 * 119.61655 * 143.60822 * 16 14 13 22 22 C 1.54472 * 101.83400 * 25.22073 * 14 13 12 23 23 C 1.34414 * 124.34537 * 90.02389 * 12 11 2 24 24 O 1.21281 * 124.94738 * 0.35307 * 23 12 11 25 25 H 1.08994 * 109.47129 * 275.06454 * 1 2 3 26 26 H 1.09004 * 109.46756 * 35.05920 * 1 2 3 27 27 H 1.08997 * 109.47309 * 155.06124 * 1 2 3 28 28 H 0.96997 * 119.99856 * 180.02562 * 6 5 3 29 29 H 1.09004 * 109.46733 * 150.00082 * 11 2 1 30 30 H 1.08994 * 109.47254 * 29.99947 * 11 2 1 31 31 H 1.09001 * 110.24670 * 282.00832 * 13 12 11 32 32 H 1.09005 * 110.24950 * 44.00078 * 13 12 11 33 33 H 1.08005 * 120.41448 * 359.97438 * 17 16 14 34 34 H 1.07996 * 120.78754 * 180.25721 * 18 17 16 35 35 H 1.08004 * 120.41873 * 179.75051 * 19 18 17 36 36 H 1.08001 * 119.61827 * 180.02562 * 20 19 18 37 37 H 1.09001 * 110.54044 * 216.75788 * 22 14 13 38 38 H 1.08998 * 110.35853 * 94.16605 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1805 1.2143 -0.3211 5 6 1.5190 2.3515 0.4128 6 7 0.3825 2.2863 1.0735 7 14 2.2832 4.0126 0.0307 8 1 2.4077 4.1737 -1.4403 9 1 1.4201 5.0915 0.5750 10 1 3.6291 4.0932 0.6531 11 6 2.1975 -1.2688 -0.0006 12 7 2.4417 -1.6923 1.3805 13 6 3.6289 -1.3258 2.1614 14 6 3.2574 -1.6092 3.6339 15 1 2.8532 -0.7173 4.1127 16 6 4.4444 -2.1376 4.3974 17 6 5.3361 -2.9880 3.7710 18 6 6.4279 -3.4638 4.4806 19 6 6.5763 -3.0738 5.8030 20 6 5.6408 -2.2257 6.3641 21 7 4.6172 -1.7879 5.6569 22 6 2.1663 -2.6921 3.4825 23 6 1.6071 -2.4667 2.0950 24 8 0.5563 -2.9153 1.6884 25 1 -0.3633 0.0907 1.0236 26 1 -0.3633 0.8413 -0.5903 27 1 -0.3634 -0.9318 -0.4333 28 1 -0.0584 3.1008 1.3616 29 1 3.1499 -1.1382 -0.5144 30 1 1.6084 -2.0282 -0.5147 31 1 4.4804 -1.9374 1.8627 32 1 3.8575 -0.2686 2.0267 33 1 5.1864 -3.2748 2.7405 34 1 7.1432 -4.1261 4.0159 35 1 7.4128 -3.4284 6.3871 36 1 5.7495 -1.9170 7.3933 37 1 1.3880 -2.5585 4.2339 38 1 2.6058 -3.6866 3.5599 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733295044.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:26 Heat of formation + Delta-G solvation = 14.850849 kcal Electronic energy + Delta-G solvation = -21311.091594 eV Core-core repulsion = 18153.721463 eV Total energy + Delta-G solvation = -3157.370131 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.76222 -40.57778 -37.65327 -37.16237 -34.32821 -33.35858 -32.71903 -30.93876 -28.41139 -28.03828 -27.21399 -24.83097 -24.19861 -23.20323 -21.79842 -20.42419 -18.79637 -18.12280 -17.83871 -17.30623 -16.84274 -16.49259 -16.38696 -15.84954 -15.29776 -15.24290 -15.03688 -14.65902 -14.60340 -14.04655 -13.92154 -13.79036 -13.52451 -13.20505 -12.83093 -12.65481 -12.55110 -12.45916 -12.28974 -12.12904 -12.05207 -11.95714 -10.90792 -10.74997 -10.68552 -10.31350 -9.84526 -9.64224 -9.05241 -7.87065 -5.38138 0.18457 0.43288 1.46259 1.48701 1.55548 1.66337 2.34396 2.49186 2.84442 3.12665 3.32671 3.42816 3.66192 3.67627 3.95064 4.01163 4.07188 4.18603 4.31143 4.32844 4.43261 4.52503 4.68223 4.70434 4.78671 4.78862 4.85782 4.94005 5.04976 5.19275 5.31715 5.33888 5.55244 5.62994 5.78305 5.84746 6.20494 6.37823 7.05229 7.11959 7.30534 7.74481 8.21423 9.16291 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.018829 B = 0.005324 C = 0.004591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.740278 B = 5257.521757 C = 6096.802730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.185 3.815 2 N -0.602 5.602 3 C -0.268 4.268 4 H 0.086 0.914 5 C -0.049 4.049 6 N -0.937 5.937 7 Si 0.971 3.029 8 H -0.275 1.275 9 H -0.300 1.300 10 H -0.271 1.271 11 C 0.357 3.643 12 N -0.616 5.616 13 C 0.114 3.886 14 C -0.043 4.043 15 H 0.077 0.923 16 C 0.130 3.870 17 C -0.171 4.171 18 C -0.070 4.070 19 C -0.171 4.171 20 C 0.086 3.914 21 N -0.519 5.519 22 C -0.129 4.129 23 C 0.506 3.494 24 O -0.588 6.588 25 H -0.008 1.008 26 H 0.024 0.976 27 H 0.018 0.982 28 H 0.247 0.753 29 H 0.097 0.903 30 H 0.068 0.932 31 H 0.105 0.895 32 H 0.065 0.935 33 H 0.152 0.848 34 H 0.168 0.832 35 H 0.167 0.833 36 H 0.174 0.826 37 H 0.094 0.906 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.158 -12.293 7.239 21.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.325 5.325 3 C -0.397 4.397 4 H 0.104 0.896 5 C -0.245 4.245 6 N -0.583 5.583 7 Si 0.799 3.201 8 H -0.201 1.201 9 H -0.227 1.227 10 H -0.197 1.197 11 C 0.150 3.850 12 N -0.353 5.353 13 C -0.009 4.009 14 C -0.063 4.063 15 H 0.096 0.904 16 C -0.007 4.007 17 C -0.191 4.191 18 C -0.096 4.096 19 C -0.190 4.190 20 C -0.071 4.071 21 N -0.228 5.228 22 C -0.170 4.170 23 C 0.294 3.706 24 O -0.470 6.470 25 H 0.010 0.990 26 H 0.043 0.957 27 H 0.037 0.963 28 H 0.057 0.943 29 H 0.115 0.885 30 H 0.086 0.914 31 H 0.122 0.878 32 H 0.084 0.916 33 H 0.170 0.830 34 H 0.185 0.815 35 H 0.185 0.815 36 H 0.191 0.809 37 H 0.112 0.888 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 14.903 -11.773 7.324 20.356 hybrid contribution 0.127 0.870 -0.209 0.904 sum 15.030 -10.903 7.115 19.884 Atomic orbital electron populations 1.20428 0.83211 0.95399 0.97000 1.44928 1.02252 1.02556 1.82719 1.19573 0.97519 0.85359 1.37273 0.89591 1.25849 0.98238 1.02059 0.98313 1.70308 1.20104 1.27335 1.40555 0.85287 0.77602 0.79077 0.78110 1.20085 1.22686 1.19696 1.21278 0.96798 0.85844 0.81061 1.50233 1.21193 1.48036 1.15798 1.22259 0.88561 1.01668 0.88446 1.20722 0.92838 0.98200 0.94525 0.90406 1.20637 0.94895 0.94744 0.90464 1.22180 0.95736 0.98652 1.02524 1.22013 0.96378 0.97035 0.94146 1.22530 1.01200 0.98724 0.96543 1.23213 0.89383 0.93930 1.00578 1.67382 1.23196 1.24450 1.07777 1.22294 0.98941 1.01182 0.94541 1.21359 0.83165 0.77524 0.88557 1.90625 1.24216 1.55334 1.76803 0.98955 0.95740 0.96321 0.94334 0.88508 0.91366 0.87759 0.91649 0.83006 0.81463 0.81508 0.80883 0.88767 0.85912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.03 9.02 127.77 1.15 11.19 16 2 N -0.60 -30.52 3.17 -738.75 -2.34 -32.86 16 3 C -0.27 -14.16 9.68 84.03 0.81 -13.35 16 4 H 0.09 4.22 7.86 -2.91 -0.02 4.19 16 5 C -0.05 -2.72 5.07 84.86 0.43 -2.29 16 6 N -0.94 -56.67 10.65 21.65 0.23 -56.44 16 7 Si 0.97 44.41 29.58 68.60 2.03 46.44 16 8 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 9 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 10 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 11 C 0.36 14.50 6.50 170.96 1.11 15.61 16 12 N -0.62 -23.28 3.17 -829.72 -2.63 -25.91 16 13 C 0.11 3.51 6.79 86.84 0.59 4.10 16 14 C -0.04 -1.29 3.50 -10.53 -0.04 -1.33 16 15 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 16 C 0.13 3.26 5.81 42.55 0.25 3.51 16 17 C -0.17 -3.16 8.88 22.36 0.20 -2.96 16 18 C -0.07 -0.94 10.18 22.47 0.23 -0.71 16 19 C -0.17 -2.25 10.11 22.36 0.23 -2.03 16 20 C 0.09 1.60 11.18 84.67 0.95 2.55 16 21 N -0.52 -13.74 10.27 -183.88 -1.89 -15.63 16 22 C -0.13 -3.96 6.40 30.53 0.20 -3.76 16 23 C 0.51 20.22 8.02 87.90 0.71 20.93 16 24 O -0.59 -28.29 17.59 -3.03 -0.05 -28.34 16 25 H -0.01 -0.49 7.41 -2.39 -0.02 -0.51 16 26 H 0.02 1.37 7.19 -2.38 -0.02 1.36 16 27 H 0.02 0.92 7.84 -2.39 -0.02 0.90 16 28 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 29 H 0.10 3.36 8.03 -2.39 -0.02 3.34 16 30 H 0.07 2.75 7.64 -2.39 -0.02 2.74 16 31 H 0.10 2.37 5.62 -2.39 -0.01 2.35 16 32 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 33 H 0.15 2.30 6.38 -2.91 -0.02 2.28 16 34 H 0.17 1.10 8.06 -2.91 -0.02 1.08 16 35 H 0.17 1.02 8.06 -2.91 -0.02 1.00 16 36 H 0.17 2.31 8.06 -2.91 -0.02 2.29 16 37 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 38 H 0.12 3.04 7.78 -2.39 -0.02 3.02 16 Total: -1.00 -74.43 319.54 3.21 -71.21 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: 1.06 Total: 10.05 kcal Atomic # 6 Polarization: 24.67 SS G_CDS: 6.81 Total: 31.47 kcal Atomic # 7 Polarization: -124.21 SS G_CDS: -6.63 Total: -130.84 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -0.05 Total: -28.34 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -74.43 3.21 -71.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733295044.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.066 kcal (2) G-P(sol) polarization free energy of solvation -74.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds