Wall clock time and date at job start Mon Mar 30 2020 02:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36937 * 120.00265 * 2 1 4 4 H 1.08003 * 119.99828 * 202.43633 * 3 2 1 5 5 C 1.38815 * 119.99841 * 22.44576 * 3 2 1 6 6 N 1.31619 * 120.00222 * 11.32455 * 5 3 2 7 7 Si 1.86802 * 119.99772 * 191.32778 * 5 3 2 8 8 H 1.48504 * 109.46919 * 359.97438 * 7 5 3 9 9 H 1.48500 * 109.47143 * 119.99673 * 7 5 3 10 10 H 1.48501 * 109.46992 * 239.99618 * 7 5 3 11 11 C 1.46497 * 119.99885 * 179.97438 * 2 1 3 12 12 N 1.46501 * 109.47439 * 270.00073 * 11 2 1 13 13 C 1.46764 * 124.34659 * 89.99792 * 12 11 2 14 14 C 1.54484 * 105.47325 * 162.98664 * 13 12 11 15 15 H 1.09005 * 110.96745 * 267.29448 * 14 13 12 16 16 C 1.50699 * 110.97035 * 143.53698 * 14 13 12 17 17 C 1.38669 * 120.41978 * 126.17109 * 16 14 13 18 18 C 1.38626 * 118.42086 * 179.97438 * 17 16 14 19 19 C 1.38228 * 119.16299 * 359.97438 * 18 17 16 20 20 N 1.31860 * 120.75956 * 359.97438 * 19 18 17 21 21 C 1.31888 * 121.72686 * 359.71274 * 20 19 18 22 22 C 1.54628 * 101.76262 * 25.41385 * 14 13 12 23 23 C 1.34742 * 124.30238 * 269.96137 * 12 11 2 24 24 O 1.21277 * 125.11942 * 0.41841 * 23 12 11 25 25 H 1.08999 * 109.47207 * 274.16238 * 1 2 3 26 26 H 1.09004 * 109.46725 * 34.15717 * 1 2 3 27 27 H 1.08996 * 109.47924 * 154.15978 * 1 2 3 28 28 H 0.96997 * 119.99959 * 180.02562 * 6 5 3 29 29 H 1.09002 * 109.47477 * 150.00113 * 11 2 1 30 30 H 1.09002 * 109.47385 * 30.00046 * 11 2 1 31 31 H 1.09003 * 110.25009 * 43.98290 * 13 12 11 32 32 H 1.08999 * 110.24901 * 281.98166 * 13 12 11 33 33 H 1.07994 * 120.79065 * 0.02562 * 17 16 14 34 34 H 1.08000 * 120.42463 * 180.02562 * 18 17 16 35 35 H 1.07996 * 119.62463 * 179.97438 * 19 18 17 36 36 H 1.07997 * 119.61604 * 180.30560 * 21 20 19 37 37 H 1.08996 * 110.48507 * 93.88705 * 22 14 13 38 38 H 1.09007 * 110.48347 * 216.39514 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1684 1.2212 -0.3570 5 6 1.5345 2.3425 0.4590 6 7 0.3856 2.2682 1.0968 7 14 2.3373 4.0045 0.1713 8 1 3.6141 3.8169 -0.5634 9 1 1.4266 4.8623 -0.6288 10 1 2.6095 4.6555 1.4780 11 6 2.1974 -1.2687 0.0006 12 7 2.4416 -1.6911 1.3820 13 6 1.5302 -2.5356 2.1630 14 6 2.3711 -3.0659 3.3454 15 1 2.8172 -4.0310 3.1050 16 6 1.5412 -3.1553 4.6002 17 6 1.4665 -4.3447 5.3092 18 6 0.6914 -4.3804 6.4580 19 6 0.0239 -3.2372 6.8560 20 7 0.1189 -2.1231 6.1572 21 6 0.8517 -2.0509 5.0630 22 6 3.4560 -1.9719 3.4762 23 6 3.5325 -1.3541 2.0975 24 8 4.4416 -0.6583 1.6975 25 1 -0.3633 0.0746 1.0249 26 1 -0.3633 0.8504 -0.5770 27 1 -0.3635 -0.9248 -0.4479 28 1 -0.0444 3.0765 1.4172 29 1 3.1499 -1.1387 -0.5133 30 1 1.6083 -2.0286 -0.5129 31 1 1.1698 -3.3651 1.5545 32 1 0.6914 -1.9451 2.5316 33 1 2.0002 -5.2220 4.9750 34 1 0.6107 -5.2896 7.0353 35 1 -0.5823 -3.2568 7.7495 36 1 0.9092 -1.1194 4.5196 37 1 3.1583 -1.2256 4.2127 38 1 4.4137 -2.4151 3.7493 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000765683332.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:32 Heat of formation + Delta-G solvation = 33.264161 kcal Electronic energy + Delta-G solvation = -21419.879534 eV Core-core repulsion = 18263.307865 eV Total energy + Delta-G solvation = -3156.571670 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.60355 -39.27511 -35.96998 -35.50628 -33.13193 -32.12521 -30.98224 -29.48930 -27.09743 -26.03067 -25.39712 -23.82501 -23.25158 -21.37009 -20.65482 -18.75556 -17.30548 -16.79181 -16.66088 -16.02779 -15.53125 -14.99223 -14.63723 -14.39906 -14.00253 -13.63319 -13.39221 -13.20087 -13.13024 -12.99595 -12.87692 -12.44139 -11.98746 -11.56103 -11.49882 -11.14109 -10.97225 -10.87717 -10.68088 -10.45789 -9.96626 -9.92829 -9.85809 -9.44693 -9.22241 -8.88638 -8.56370 -8.01180 -6.93842 -5.74703 -3.21947 1.02606 1.21460 3.32771 3.41608 3.49040 3.53468 3.70569 3.89140 4.31850 4.53660 4.62211 4.64745 4.79887 4.82926 4.91097 5.06227 5.20725 5.37016 5.48668 5.49230 5.56553 5.75856 5.81111 5.88331 5.89348 5.98689 6.03878 6.13281 6.28636 6.44192 6.64055 6.65504 7.23333 7.40454 7.67568 7.88244 7.94583 7.96707 8.36511 8.98384 9.21381 9.79967 10.26093 11.30113 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.021034 B = 0.005256 C = 0.004886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.831631 B = 5326.035653 C = 5728.703143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.584 5.584 3 C -0.251 4.251 4 H 0.075 0.925 5 C 0.006 3.994 6 N -0.908 5.908 7 Si 0.906 3.094 8 H -0.276 1.276 9 H -0.290 1.290 10 H -0.290 1.290 11 C 0.358 3.642 12 N -0.619 5.619 13 C 0.111 3.889 14 C -0.057 4.057 15 H 0.096 0.904 16 C -0.120 4.120 17 C -0.072 4.072 18 C -0.176 4.176 19 C 0.090 3.910 20 N -0.480 5.480 21 C 0.112 3.888 22 C -0.150 4.150 23 C 0.520 3.480 24 O -0.531 6.531 25 H 0.030 0.970 26 H 0.049 0.951 27 H -0.002 1.002 28 H 0.252 0.748 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.153 0.847 36 H 0.160 0.840 37 H 0.098 0.902 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.385 -16.326 7.868 18.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.306 5.306 3 C -0.381 4.381 4 H 0.093 0.907 5 C -0.193 4.193 6 N -0.552 5.552 7 Si 0.736 3.264 8 H -0.201 1.201 9 H -0.216 1.216 10 H -0.217 1.217 11 C 0.150 3.850 12 N -0.360 5.360 13 C -0.014 4.014 14 C -0.077 4.077 15 H 0.114 0.886 16 C -0.122 4.122 17 C -0.098 4.098 18 C -0.196 4.196 19 C -0.067 4.067 20 N -0.188 5.188 21 C -0.045 4.045 22 C -0.191 4.191 23 C 0.305 3.695 24 O -0.407 6.407 25 H 0.049 0.951 26 H 0.068 0.932 27 H 0.016 0.984 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.151 0.849 34 H 0.150 0.850 35 H 0.170 0.830 36 H 0.177 0.823 37 H 0.117 0.883 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.520 -15.000 7.828 16.928 hybrid contribution 0.595 0.155 -0.008 0.615 sum 0.075 -14.845 7.820 16.779 Atomic orbital electron populations 1.20885 0.82348 0.95829 0.99537 1.44819 1.02432 1.01543 1.81782 1.19351 0.98133 0.84789 1.35781 0.90726 1.25062 0.97507 0.98787 0.97896 1.70067 1.17880 1.27160 1.40125 0.86144 0.78793 0.83916 0.77519 1.20098 1.21631 1.21670 1.21242 0.96302 0.86942 0.80498 1.50640 1.19740 1.49752 1.15833 1.22070 0.93449 0.94281 0.91639 1.21040 0.95005 0.99742 0.91929 0.88590 1.20671 0.99368 0.94772 0.97405 1.21474 0.96778 0.97412 0.94101 1.22103 0.99313 1.00119 0.98043 1.22801 0.96920 0.88400 0.98565 1.67776 1.16850 1.27716 1.06484 1.22854 0.91170 0.98529 0.91960 1.22557 0.99830 0.98443 0.98289 1.20658 0.82302 0.79917 0.86593 1.90680 1.36940 1.37998 1.75110 0.95121 0.93201 0.98364 0.93758 0.90894 0.92165 0.91131 0.91276 0.84865 0.84974 0.83015 0.82262 0.88341 0.88829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.79 9.01 59.84 0.54 4.32 16 2 N -0.58 -14.56 3.16 -184.86 -0.58 -15.15 16 3 C -0.25 -7.09 9.67 -15.06 -0.15 -7.23 16 4 H 0.07 2.18 7.85 -52.48 -0.41 1.77 16 5 C 0.01 0.17 5.13 -17.43 -0.09 0.08 16 6 N -0.91 -26.59 10.59 55.49 0.59 -26.01 16 7 Si 0.91 22.87 29.57 -169.99 -5.03 17.85 16 8 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 9 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 10 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 11 C 0.36 7.34 6.50 -63.75 -0.41 6.93 16 12 N -0.62 -11.64 3.18 -176.03 -0.56 -12.20 16 13 C 0.11 1.61 6.82 -3.12 -0.02 1.59 16 14 C -0.06 -0.69 3.39 -90.14 -0.31 -0.99 16 15 H 0.10 0.92 8.01 -51.93 -0.42 0.51 16 16 C -0.12 -1.41 4.97 -104.48 -0.52 -1.93 16 17 C -0.07 -0.68 9.83 -39.28 -0.39 -1.07 16 18 C -0.18 -1.59 10.11 -39.44 -0.40 -1.99 16 19 C 0.09 0.98 11.18 -17.54 -0.20 0.79 16 20 N -0.48 -6.89 10.36 -13.25 -0.14 -7.03 16 21 C 0.11 1.59 9.22 -17.55 -0.16 1.42 16 22 C -0.15 -2.22 6.33 -26.74 -0.17 -2.39 16 23 C 0.52 10.45 8.04 -10.72 -0.09 10.36 16 24 O -0.53 -13.11 17.61 5.56 0.10 -13.01 16 25 H 0.03 0.79 7.42 -51.93 -0.39 0.41 16 26 H 0.05 1.29 7.19 -51.93 -0.37 0.92 16 27 H 0.00 -0.04 7.85 -51.93 -0.41 -0.45 16 28 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.07 1.57 7.83 -51.93 -0.41 1.16 16 30 H 0.06 1.04 7.86 -51.93 -0.41 0.63 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.07 1.13 6.76 -51.93 -0.35 0.78 16 33 H 0.13 0.92 8.04 -52.49 -0.42 0.49 16 34 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.15 1.24 8.06 -52.49 -0.42 0.81 16 36 H 0.16 2.53 7.36 -52.49 -0.39 2.14 16 37 H 0.10 1.52 7.07 -51.93 -0.37 1.15 16 38 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 319.95 15.07 4.82 4.82 Total: -1.00 -34.05 319.95 -8.32 -42.37 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -5.16 Total: -1.53 kcal Atomic # 6 Polarization: 12.24 SS G_CDS: -2.35 Total: 9.89 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: -0.69 Total: -60.38 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.10 Total: -13.01 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.03 Total: 17.85 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.05 -8.32 -42.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765683332.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.630 kcal (2) G-P(sol) polarization free energy of solvation -34.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds