Wall clock time and date at job start Mon Mar 30 2020 02:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36937 * 120.00265 * 2 1 4 4 H 1.08003 * 119.99828 * 202.43633 * 3 2 1 5 5 C 1.38815 * 119.99841 * 22.44576 * 3 2 1 6 6 N 1.31619 * 120.00222 * 11.32455 * 5 3 2 7 7 Si 1.86802 * 119.99772 * 191.32778 * 5 3 2 8 8 H 1.48504 * 109.46919 * 359.97438 * 7 5 3 9 9 H 1.48500 * 109.47143 * 119.99673 * 7 5 3 10 10 H 1.48501 * 109.46992 * 239.99618 * 7 5 3 11 11 C 1.46497 * 119.99885 * 179.97438 * 2 1 3 12 12 N 1.46501 * 109.47439 * 270.00073 * 11 2 1 13 13 C 1.46764 * 124.34659 * 89.99792 * 12 11 2 14 14 C 1.54484 * 105.47325 * 162.98664 * 13 12 11 15 15 H 1.09005 * 110.96745 * 267.29448 * 14 13 12 16 16 C 1.50699 * 110.97035 * 143.53698 * 14 13 12 17 17 C 1.38669 * 120.41978 * 126.17109 * 16 14 13 18 18 C 1.38626 * 118.42086 * 179.97438 * 17 16 14 19 19 C 1.38228 * 119.16299 * 359.97438 * 18 17 16 20 20 N 1.31860 * 120.75956 * 359.97438 * 19 18 17 21 21 C 1.31888 * 121.72686 * 359.71274 * 20 19 18 22 22 C 1.54628 * 101.76262 * 25.41385 * 14 13 12 23 23 C 1.34742 * 124.30238 * 269.96137 * 12 11 2 24 24 O 1.21277 * 125.11942 * 0.41841 * 23 12 11 25 25 H 1.08999 * 109.47207 * 274.16238 * 1 2 3 26 26 H 1.09004 * 109.46725 * 34.15717 * 1 2 3 27 27 H 1.08996 * 109.47924 * 154.15978 * 1 2 3 28 28 H 0.96997 * 119.99959 * 180.02562 * 6 5 3 29 29 H 1.09002 * 109.47477 * 150.00113 * 11 2 1 30 30 H 1.09002 * 109.47385 * 30.00046 * 11 2 1 31 31 H 1.09003 * 110.25009 * 43.98290 * 13 12 11 32 32 H 1.08999 * 110.24901 * 281.98166 * 13 12 11 33 33 H 1.07994 * 120.79065 * 0.02562 * 17 16 14 34 34 H 1.08000 * 120.42463 * 180.02562 * 18 17 16 35 35 H 1.07996 * 119.62463 * 179.97438 * 19 18 17 36 36 H 1.07997 * 119.61604 * 180.30560 * 21 20 19 37 37 H 1.08996 * 110.48507 * 93.88705 * 22 14 13 38 38 H 1.09007 * 110.48347 * 216.39514 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1684 1.2212 -0.3570 5 6 1.5345 2.3425 0.4590 6 7 0.3856 2.2682 1.0968 7 14 2.3373 4.0045 0.1713 8 1 3.6141 3.8169 -0.5634 9 1 1.4266 4.8623 -0.6288 10 1 2.6095 4.6555 1.4780 11 6 2.1974 -1.2687 0.0006 12 7 2.4416 -1.6911 1.3820 13 6 1.5302 -2.5356 2.1630 14 6 2.3711 -3.0659 3.3454 15 1 2.8172 -4.0310 3.1050 16 6 1.5412 -3.1553 4.6002 17 6 1.4665 -4.3447 5.3092 18 6 0.6914 -4.3804 6.4580 19 6 0.0239 -3.2372 6.8560 20 7 0.1189 -2.1231 6.1572 21 6 0.8517 -2.0509 5.0630 22 6 3.4560 -1.9719 3.4762 23 6 3.5325 -1.3541 2.0975 24 8 4.4416 -0.6583 1.6975 25 1 -0.3633 0.0746 1.0249 26 1 -0.3633 0.8504 -0.5770 27 1 -0.3635 -0.9248 -0.4479 28 1 -0.0444 3.0765 1.4172 29 1 3.1499 -1.1387 -0.5133 30 1 1.6083 -2.0286 -0.5129 31 1 1.1698 -3.3651 1.5545 32 1 0.6914 -1.9451 2.5316 33 1 2.0002 -5.2220 4.9750 34 1 0.6107 -5.2896 7.0353 35 1 -0.5823 -3.2568 7.7495 36 1 0.9092 -1.1194 4.5196 37 1 3.1583 -1.2256 4.2127 38 1 4.4137 -2.4151 3.7493 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000765683332.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:31 Heat of formation + Delta-G solvation = 10.516561 kcal Electronic energy + Delta-G solvation = -21420.865944 eV Core-core repulsion = 18263.307865 eV Total energy + Delta-G solvation = -3157.558080 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.68946 -40.54238 -37.63456 -37.20809 -34.53719 -33.23405 -32.60975 -30.78551 -28.43978 -27.91008 -27.14788 -24.80563 -24.22264 -23.27498 -21.68683 -20.32465 -18.86211 -18.21728 -17.81136 -17.40359 -16.96245 -16.43626 -16.24110 -15.66495 -15.34873 -15.17919 -14.95471 -14.54169 -14.49128 -14.19442 -13.88088 -13.80159 -13.76916 -13.12074 -12.90485 -12.72118 -12.57066 -12.37945 -12.34043 -12.14988 -12.09257 -11.92311 -10.89148 -10.72565 -10.59403 -10.31259 -9.85902 -9.59361 -8.99241 -7.91374 -5.40685 0.16913 0.41991 1.36610 1.39621 1.50093 1.75221 2.38758 2.45830 2.86607 3.28646 3.30767 3.61944 3.68029 3.71629 3.73674 4.01976 4.09023 4.18525 4.24304 4.36408 4.43044 4.61822 4.66659 4.72844 4.76305 4.79458 4.85467 4.91980 5.09763 5.26105 5.27109 5.39682 5.56689 5.68206 5.83398 5.87692 6.25658 6.42801 7.09155 7.09867 7.39725 7.76041 8.15579 9.10736 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.021034 B = 0.005256 C = 0.004886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.831631 B = 5326.035653 C = 5728.703143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.604 5.604 3 C -0.254 4.254 4 H 0.057 0.943 5 C -0.045 4.045 6 N -0.932 5.932 7 Si 0.960 3.040 8 H -0.274 1.274 9 H -0.280 1.280 10 H -0.295 1.295 11 C 0.358 3.642 12 N -0.622 5.622 13 C 0.108 3.892 14 C -0.035 4.035 15 H 0.140 0.860 16 C -0.122 4.122 17 C -0.060 4.060 18 C -0.162 4.162 19 C 0.078 3.922 20 N -0.522 5.522 21 C 0.085 3.915 22 C -0.140 4.140 23 C 0.502 3.498 24 O -0.588 6.588 25 H 0.002 0.998 26 H 0.020 0.980 27 H 0.041 0.959 28 H 0.248 0.752 29 H 0.056 0.944 30 H 0.103 0.897 31 H 0.107 0.893 32 H 0.045 0.955 33 H 0.175 0.825 34 H 0.173 0.827 35 H 0.175 0.825 36 H 0.122 0.878 37 H 0.085 0.915 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.311 -20.216 8.848 22.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.328 5.328 3 C -0.385 4.385 4 H 0.074 0.926 5 C -0.240 4.240 6 N -0.578 5.578 7 Si 0.788 3.212 8 H -0.199 1.199 9 H -0.207 1.207 10 H -0.223 1.223 11 C 0.151 3.849 12 N -0.359 5.359 13 C -0.016 4.016 14 C -0.054 4.054 15 H 0.158 0.842 16 C -0.124 4.124 17 C -0.086 4.086 18 C -0.181 4.181 19 C -0.079 4.079 20 N -0.231 5.231 21 C -0.071 4.071 22 C -0.180 4.180 23 C 0.290 3.710 24 O -0.469 6.469 25 H 0.021 0.979 26 H 0.039 0.961 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.121 0.879 31 H 0.125 0.875 32 H 0.063 0.937 33 H 0.192 0.808 34 H 0.191 0.809 35 H 0.192 0.808 36 H 0.140 0.860 37 H 0.104 0.896 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.457 -18.946 8.817 20.903 hybrid contribution 0.553 1.225 -0.250 1.368 sum 0.096 -17.721 8.568 19.684 Atomic orbital electron populations 1.20605 0.81900 0.96651 0.97648 1.44921 1.02847 1.02042 1.82954 1.19373 0.97453 0.86646 1.34980 0.92556 1.25687 0.98314 1.01560 0.98461 1.70207 1.18912 1.27349 1.41375 0.85316 0.78170 0.80650 0.77039 1.19865 1.20665 1.22261 1.21217 0.95918 0.86497 0.81282 1.50251 1.20219 1.49857 1.15594 1.22281 0.92283 0.94192 0.92801 1.21017 0.93279 1.00240 0.90865 0.84248 1.20550 0.99291 0.95034 0.97562 1.21919 0.96012 0.97332 0.93328 1.22540 0.97290 1.00584 0.97712 1.23324 0.97369 0.88259 0.98901 1.67661 1.18075 1.30124 1.07290 1.22472 0.93403 0.98440 0.92794 1.22479 1.02484 0.99007 0.94076 1.21574 0.81672 0.79180 0.88532 1.90637 1.39079 1.40498 1.76688 0.97934 0.96146 0.94028 0.94265 0.92599 0.87894 0.87467 0.93684 0.80810 0.80946 0.80793 0.86021 0.89632 0.86161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.54 9.01 127.77 1.15 9.69 16 2 N -0.60 -30.67 3.16 -738.78 -2.34 -33.01 16 3 C -0.25 -14.87 9.67 84.03 0.81 -14.05 16 4 H 0.06 3.44 7.85 -2.91 -0.02 3.42 16 5 C -0.04 -2.65 5.13 84.86 0.44 -2.22 16 6 N -0.93 -56.81 10.59 21.65 0.23 -56.58 16 7 Si 0.96 48.59 29.57 68.60 2.03 50.62 16 8 H -0.27 -13.60 7.11 99.48 0.71 -12.89 16 9 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 10 H -0.30 -15.11 7.11 99.48 0.71 -14.40 16 11 C 0.36 14.53 6.50 170.96 1.11 15.65 16 12 N -0.62 -23.01 3.18 -829.23 -2.64 -25.65 16 13 C 0.11 2.92 6.82 86.83 0.59 3.51 16 14 C -0.03 -0.72 3.39 -10.48 -0.04 -0.76 16 15 H 0.14 1.79 8.01 -2.38 -0.02 1.77 16 16 C -0.12 -2.55 4.97 -19.78 -0.10 -2.64 16 17 C -0.06 -0.83 9.83 22.47 0.22 -0.61 16 18 C -0.16 -2.15 10.11 22.36 0.23 -1.93 16 19 C 0.08 1.52 11.18 84.69 0.95 2.47 16 20 N -0.52 -14.99 10.36 -195.84 -2.03 -17.02 16 21 C 0.09 2.45 9.22 84.67 0.78 3.23 16 22 C -0.14 -3.98 6.33 30.59 0.19 -3.78 16 23 C 0.50 20.38 8.04 87.85 0.71 21.09 16 24 O -0.59 -30.11 17.61 -3.02 -0.05 -30.16 16 25 H 0.00 0.12 7.42 -2.39 -0.02 0.10 16 26 H 0.02 1.07 7.19 -2.38 -0.02 1.05 16 27 H 0.04 1.61 7.85 -2.39 -0.02 1.59 16 28 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 29 H 0.06 2.44 7.83 -2.39 -0.02 2.42 16 30 H 0.10 3.27 7.86 -2.39 -0.02 3.26 16 31 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.04 1.48 6.76 -2.39 -0.02 1.46 16 33 H 0.17 1.05 8.04 -2.91 -0.02 1.03 16 34 H 0.17 0.94 8.06 -2.91 -0.02 0.92 16 35 H 0.18 2.39 8.06 -2.91 -0.02 2.36 16 36 H 0.12 4.27 7.36 -2.91 -0.02 4.24 16 37 H 0.09 2.70 7.07 -2.39 -0.02 2.68 16 38 H 0.12 2.77 8.14 -2.38 -0.02 2.75 16 Total: -1.00 -80.53 319.95 3.30 -77.24 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: 1.05 Total: 4.92 kcal Atomic # 6 Polarization: 22.60 SS G_CDS: 7.04 Total: 29.64 kcal Atomic # 7 Polarization: -125.48 SS G_CDS: -6.77 Total: -132.26 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -0.05 Total: -30.16 kcal Atomic # 14 Polarization: 48.59 SS G_CDS: 2.03 Total: 50.62 kcal Total: -80.53 3.30 -77.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765683332.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.753 kcal (2) G-P(sol) polarization free energy of solvation -80.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds