Wall clock time and date at job start Mon Mar 30 2020 01:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47182 * 2 1 4 4 C 1.50694 * 109.47194 * 240.00148 * 2 1 3 5 5 N 1.28014 * 120.00387 * 120.00400 * 4 2 1 6 6 N 1.40101 * 119.99997 * 180.02562 * 5 4 2 7 7 C 1.34774 * 119.99915 * 179.97438 * 6 5 4 8 8 O 1.21631 * 119.99866 * 359.97438 * 7 6 5 9 9 C 1.47475 * 120.00372 * 179.97438 * 7 6 5 10 10 C 1.39807 * 120.07408 * 180.02562 * 9 7 6 11 11 C 1.37610 * 119.92930 * 180.02562 * 10 9 7 12 12 C 1.39218 * 120.06994 * 0.02562 * 11 10 9 13 13 N 1.39062 * 119.92659 * 179.97438 * 12 11 10 14 14 C 1.39217 * 120.14391 * 0.25216 * 12 11 10 15 15 C 1.37611 * 120.06861 * 359.44797 * 14 12 11 16 16 C 1.52998 * 109.46933 * 119.99710 * 2 1 3 17 17 C 1.50699 * 109.47279 * 294.99987 * 16 2 1 18 18 H 1.07994 * 120.00192 * 0.02562 * 17 16 2 19 19 C 1.37880 * 119.99805 * 179.97438 * 17 16 2 20 20 N 1.31512 * 119.99992 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99900 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46941 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47186 * 120.00157 * 21 19 17 24 24 H 1.48499 * 109.47347 * 240.00685 * 21 19 17 25 25 H 1.09003 * 109.47002 * 300.00191 * 1 2 3 26 26 H 1.09004 * 109.46748 * 59.99859 * 1 2 3 27 27 H 1.09001 * 109.47182 * 179.97438 * 1 2 3 28 28 H 1.08004 * 119.99630 * 299.99400 * 4 2 1 29 29 H 0.97004 * 120.00074 * 359.97438 * 6 5 4 30 30 H 1.07996 * 120.03768 * 359.97438 * 10 9 7 31 31 H 1.08005 * 119.96692 * 180.02562 * 11 10 9 32 32 H 0.97001 * 120.00403 * 0.02562 * 13 12 11 33 33 H 0.97005 * 119.99871 * 179.72465 * 13 12 11 34 34 H 1.07998 * 119.96728 * 179.70383 * 14 12 11 35 35 H 1.07999 * 120.03360 * 180.25106 * 15 14 12 36 36 H 1.08999 * 109.47330 * 55.00114 * 16 2 1 37 37 H 1.09003 * 109.47030 * 174.99910 * 16 2 1 38 38 H 0.97008 * 119.99799 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 7 2.7684 -0.0883 -2.0731 6 7 3.2350 -0.7486 -3.2172 7 6 4.0094 -0.0935 -4.1046 8 8 4.3030 1.0711 -3.9123 9 6 4.5011 -0.7887 -5.3088 10 6 5.3050 -0.1107 -6.2300 11 6 5.7616 -0.7621 -7.3528 12 6 5.4234 -2.0946 -7.5722 13 7 5.8861 -2.7499 -8.7082 14 6 4.6183 -2.7709 -6.6598 15 6 4.1635 -2.1270 -5.5319 16 6 2.0400 -0.7212 1.2493 17 6 1.6413 0.0571 2.4766 18 1 1.0800 0.9742 2.3757 19 6 1.9923 -0.4022 3.7283 20 7 2.6755 -1.5192 3.8512 21 14 1.4975 0.5622 5.2497 22 1 0.7402 1.7733 4.8434 23 1 0.6432 -0.2871 6.1181 24 1 2.7153 0.9670 5.9970 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7715 -1.7444 -1.4013 29 1 3.0005 -1.6773 -3.3707 30 1 5.5667 0.9233 -6.0610 31 1 6.3831 -0.2391 -8.0647 32 1 6.4441 -2.2786 -9.3465 33 1 5.6544 -3.6795 -8.8601 34 1 4.3538 -3.8032 -6.8352 35 1 3.5423 -2.6534 -4.8224 36 1 1.6054 -1.7197 1.2952 37 1 3.1263 -0.7994 1.2056 38 1 2.9227 -1.8421 4.7319 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000765992880.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:14 Heat of formation + Delta-G solvation = 16.078459 kcal Electronic energy + Delta-G solvation = -19493.677176 eV Core-core repulsion = 16336.360278 eV Total energy + Delta-G solvation = -3157.316898 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.17204 -38.66322 -36.85885 -34.83932 -34.69571 -32.45642 -31.42169 -30.70386 -28.87677 -26.94159 -24.45999 -23.36411 -23.04709 -21.63786 -20.46840 -19.23477 -18.04718 -17.41294 -17.21796 -16.61873 -16.11192 -15.24530 -14.90491 -14.50616 -14.28932 -14.05033 -13.72957 -13.51014 -13.31705 -13.10953 -12.71012 -12.63081 -11.93702 -11.54468 -11.32492 -11.13082 -10.92191 -10.89688 -10.73353 -10.39771 -10.04985 -9.86974 -9.62514 -9.46417 -9.31776 -9.04259 -8.44483 -8.34761 -7.93696 -5.99653 -4.01145 0.82965 1.14477 2.38042 2.77703 3.11008 3.33536 3.37977 3.41410 3.45600 3.84315 4.47314 4.48239 4.63491 4.68234 5.02581 5.17162 5.24188 5.33366 5.36943 5.43311 5.71607 5.88728 5.96353 6.02310 6.10532 6.17748 6.23504 6.43379 6.52635 6.84065 6.98859 6.99311 7.00957 7.23948 7.37625 7.64591 7.72536 7.91504 7.98992 8.39802 8.72425 9.04439 9.62570 11.11903 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.038558 B = 0.002630 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.003881 B =10643.989889 C =10739.470951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.041 4.041 3 H 0.080 0.920 4 C 0.105 3.895 5 N -0.255 5.255 6 N -0.590 5.590 7 C 0.579 3.421 8 O -0.515 6.515 9 C -0.190 4.190 10 C -0.005 4.005 11 C -0.208 4.208 12 C 0.240 3.760 13 N -0.870 5.870 14 C -0.207 4.207 15 C -0.035 4.035 16 C 0.033 3.967 17 C -0.514 4.514 18 H 0.060 0.940 19 C 0.056 3.944 20 N -0.896 5.896 21 Si 0.892 3.108 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.285 1.285 25 H 0.074 0.926 26 H 0.035 0.965 27 H 0.049 0.951 28 H 0.100 0.900 29 H 0.376 0.624 30 H 0.138 0.862 31 H 0.127 0.873 32 H 0.400 0.600 33 H 0.400 0.600 34 H 0.126 0.874 35 H 0.124 0.876 36 H 0.021 0.979 37 H 0.019 0.981 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.295 -5.751 -24.781 25.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.063 4.063 3 H 0.098 0.902 4 C -0.109 4.109 5 N -0.056 5.056 6 N -0.332 5.332 7 C 0.368 3.632 8 O -0.389 6.389 9 C -0.197 4.197 10 C -0.025 4.025 11 C -0.231 4.231 12 C 0.133 3.867 13 N -0.408 5.408 14 C -0.229 4.229 15 C -0.055 4.055 16 C -0.005 4.005 17 C -0.552 4.552 18 H 0.079 0.921 19 C -0.145 4.145 20 N -0.535 5.535 21 Si 0.720 3.280 22 H -0.196 1.196 23 H -0.211 1.211 24 H -0.211 1.211 25 H 0.092 0.908 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.117 0.883 29 H 0.215 0.785 30 H 0.156 0.844 31 H 0.145 0.855 32 H 0.229 0.771 33 H 0.228 0.772 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.039 0.961 37 H 0.037 0.963 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.076 -4.201 -24.859 25.539 hybrid contribution -0.449 -1.323 0.549 1.501 sum 3.627 -5.524 -24.310 25.193 Atomic orbital electron populations 1.21673 0.94385 1.01374 1.01149 1.20381 0.95450 1.00188 0.90235 0.90164 1.26731 0.92011 0.97762 0.94428 1.74570 1.11879 1.24282 0.94881 1.46998 1.51744 1.13480 1.20955 1.17902 0.77419 0.86283 0.81618 1.90779 1.56144 1.16199 1.75769 1.19592 1.07204 0.95089 0.97798 1.20999 0.91100 0.99799 0.90617 1.20549 1.08010 0.93570 1.00965 1.17985 0.90633 0.91545 0.86541 1.42462 1.58743 1.15464 1.24081 1.20479 1.05071 1.00752 0.96646 1.21051 0.95702 0.92961 0.95763 1.19133 0.96547 0.95540 0.89322 1.21211 1.34936 1.08433 0.90617 0.92147 1.25011 0.95213 0.95088 0.99174 1.69973 1.38912 1.21231 1.23413 0.86531 0.78271 0.80101 0.83083 1.19632 1.21108 1.21077 0.90757 0.94584 0.93173 0.88261 0.78522 0.84448 0.85467 0.77130 0.77160 0.85568 0.85776 0.96081 0.96291 0.93069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.26 8.99 37.16 0.33 -1.92 16 2 C -0.04 -0.84 2.75 -91.77 -0.25 -1.09 16 3 H 0.08 1.74 8.11 -51.93 -0.42 1.32 16 4 C 0.11 1.89 9.66 -13.87 -0.13 1.76 16 5 N -0.25 -4.93 10.93 32.67 0.36 -4.57 16 6 N -0.59 -9.46 6.20 30.45 0.19 -9.27 16 7 C 0.58 9.69 7.88 -12.50 -0.10 9.59 16 8 O -0.51 -10.73 16.67 5.25 0.09 -10.64 16 9 C -0.19 -2.40 5.88 -104.96 -0.62 -3.02 16 10 C -0.01 -0.06 9.58 -39.22 -0.38 -0.44 16 11 C -0.21 -1.81 9.87 -39.45 -0.39 -2.20 16 12 C 0.24 1.86 6.75 -83.85 -0.57 1.29 16 13 N -0.87 -3.83 9.06 32.41 0.29 -3.54 16 14 C -0.21 -1.68 9.87 -39.45 -0.39 -2.07 16 15 C -0.04 -0.34 9.53 -39.22 -0.37 -0.72 16 16 C 0.03 0.82 4.43 -27.88 -0.12 0.69 16 17 C -0.51 -14.03 8.41 -34.44 -0.29 -14.32 16 18 H 0.06 1.60 7.06 -52.49 -0.37 1.23 16 19 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 20 N -0.90 -26.52 13.29 55.43 0.74 -25.79 16 21 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 22 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 25 H 0.07 1.39 6.95 -51.93 -0.36 1.03 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.10 1.49 8.00 -52.48 -0.42 1.07 16 29 H 0.38 4.55 6.65 -182.59 -1.21 3.34 16 30 H 0.14 1.59 7.64 -52.49 -0.40 1.19 16 31 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 32 H 0.40 1.10 8.83 -40.82 -0.36 0.74 16 33 H 0.40 1.07 8.83 -40.82 -0.36 0.71 16 34 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 35 H 0.12 0.96 6.39 -52.49 -0.34 0.63 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 331.49 15.07 5.00 5.00 Total: -1.00 -34.86 331.49 -7.65 -42.51 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -5.91 Total: 0.82 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -3.37 Total: -10.95 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: 1.58 Total: -43.17 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.09 Total: -10.64 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.86 -7.65 -42.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765992880.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.587 kcal (2) G-P(sol) polarization free energy of solvation -34.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds