Wall clock time and date at job start Mon Mar 30 2020 01:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47182 * 2 1 4 4 C 1.50694 * 109.47194 * 240.00148 * 2 1 3 5 5 N 1.28014 * 120.00387 * 120.00400 * 4 2 1 6 6 N 1.40101 * 119.99997 * 180.02562 * 5 4 2 7 7 C 1.34774 * 119.99915 * 179.97438 * 6 5 4 8 8 O 1.21631 * 119.99866 * 359.97438 * 7 6 5 9 9 C 1.47475 * 120.00372 * 179.97438 * 7 6 5 10 10 C 1.39807 * 120.07408 * 180.02562 * 9 7 6 11 11 C 1.37610 * 119.92930 * 180.02562 * 10 9 7 12 12 C 1.39218 * 120.06994 * 0.02562 * 11 10 9 13 13 N 1.39062 * 119.92659 * 179.97438 * 12 11 10 14 14 C 1.39217 * 120.14391 * 0.25216 * 12 11 10 15 15 C 1.37611 * 120.06861 * 359.44797 * 14 12 11 16 16 C 1.52998 * 109.46933 * 119.99710 * 2 1 3 17 17 C 1.50699 * 109.47279 * 294.99987 * 16 2 1 18 18 H 1.07994 * 120.00192 * 0.02562 * 17 16 2 19 19 C 1.37880 * 119.99805 * 179.97438 * 17 16 2 20 20 N 1.31512 * 119.99992 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99900 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46941 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47186 * 120.00157 * 21 19 17 24 24 H 1.48499 * 109.47347 * 240.00685 * 21 19 17 25 25 H 1.09003 * 109.47002 * 300.00191 * 1 2 3 26 26 H 1.09004 * 109.46748 * 59.99859 * 1 2 3 27 27 H 1.09001 * 109.47182 * 179.97438 * 1 2 3 28 28 H 1.08004 * 119.99630 * 299.99400 * 4 2 1 29 29 H 0.97004 * 120.00074 * 359.97438 * 6 5 4 30 30 H 1.07996 * 120.03768 * 359.97438 * 10 9 7 31 31 H 1.08005 * 119.96692 * 180.02562 * 11 10 9 32 32 H 0.97001 * 120.00403 * 0.02562 * 13 12 11 33 33 H 0.97005 * 119.99871 * 179.72465 * 13 12 11 34 34 H 1.07998 * 119.96728 * 179.70383 * 14 12 11 35 35 H 1.07999 * 120.03360 * 180.25106 * 15 14 12 36 36 H 1.08999 * 109.47330 * 55.00114 * 16 2 1 37 37 H 1.09003 * 109.47030 * 174.99910 * 16 2 1 38 38 H 0.97008 * 119.99799 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 7 2.7684 -0.0883 -2.0731 6 7 3.2350 -0.7486 -3.2172 7 6 4.0094 -0.0935 -4.1046 8 8 4.3030 1.0711 -3.9123 9 6 4.5011 -0.7887 -5.3088 10 6 5.3050 -0.1107 -6.2300 11 6 5.7616 -0.7621 -7.3528 12 6 5.4234 -2.0946 -7.5722 13 7 5.8861 -2.7499 -8.7082 14 6 4.6183 -2.7709 -6.6598 15 6 4.1635 -2.1270 -5.5319 16 6 2.0400 -0.7212 1.2493 17 6 1.6413 0.0571 2.4766 18 1 1.0800 0.9742 2.3757 19 6 1.9923 -0.4022 3.7283 20 7 2.6755 -1.5192 3.8512 21 14 1.4975 0.5622 5.2497 22 1 0.7402 1.7733 4.8434 23 1 0.6432 -0.2871 6.1181 24 1 2.7153 0.9670 5.9970 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7715 -1.7444 -1.4013 29 1 3.0005 -1.6773 -3.3707 30 1 5.5667 0.9233 -6.0610 31 1 6.3831 -0.2391 -8.0647 32 1 6.4441 -2.2786 -9.3465 33 1 5.6544 -3.6795 -8.8601 34 1 4.3538 -3.8032 -6.8352 35 1 3.5423 -2.6534 -4.8224 36 1 1.6054 -1.7197 1.2952 37 1 3.1263 -0.7994 1.2056 38 1 2.9227 -1.8421 4.7319 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000765992880.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:14 Heat of formation + Delta-G solvation = -8.609119 kcal Electronic energy + Delta-G solvation = -19494.747710 eV Core-core repulsion = 16336.360278 eV Total energy + Delta-G solvation = -3158.387431 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.17521 -39.65958 -38.35097 -36.36306 -35.51546 -34.34595 -32.57196 -31.73085 -29.74046 -28.81116 -26.03926 -24.58945 -23.84866 -23.04190 -21.66066 -20.70534 -19.25295 -18.50766 -18.13705 -17.86504 -17.45188 -16.50138 -16.28338 -16.17839 -15.10188 -15.07081 -14.80384 -14.75889 -14.51746 -14.37185 -14.16313 -13.71018 -13.46997 -13.21359 -12.82489 -12.71266 -12.49963 -12.22073 -12.00786 -11.77579 -11.64475 -11.36738 -11.25414 -11.18337 -10.85579 -10.51207 -10.02978 -9.87551 -8.55931 -8.15130 -6.23319 -0.03386 0.45034 1.04236 1.43541 1.45063 1.53477 1.57894 2.01896 2.46001 2.91661 2.95144 3.19575 3.63323 3.82278 3.87692 3.99485 4.06235 4.35078 4.45650 4.50947 4.58695 4.65290 4.73942 5.01231 5.03651 5.22485 5.23280 5.28092 5.30327 5.44746 5.49203 5.55051 5.74600 5.75517 5.88372 6.17390 6.28943 6.47857 6.59543 6.91310 6.92626 7.44633 7.45507 8.97116 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.038558 B = 0.002630 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.003881 B =10643.989889 C =10739.470951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.035 4.035 3 H 0.059 0.941 4 C 0.111 3.889 5 N -0.293 5.293 6 N -0.581 5.581 7 C 0.574 3.426 8 O -0.571 6.571 9 C -0.221 4.221 10 C -0.019 4.019 11 C -0.211 4.211 12 C 0.251 3.749 13 N -0.851 5.851 14 C -0.208 4.208 15 C -0.031 4.031 16 C 0.040 3.960 17 C -0.527 4.527 18 H 0.065 0.935 19 C 0.000 4.000 20 N -0.934 5.934 21 Si 0.960 3.040 22 H -0.262 1.262 23 H -0.277 1.277 24 H -0.285 1.285 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.134 0.866 29 H 0.397 0.603 30 H 0.122 0.878 31 H 0.149 0.851 32 H 0.411 0.589 33 H 0.413 0.587 34 H 0.156 0.844 35 H 0.142 0.858 36 H 0.012 0.988 37 H -0.017 1.017 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.722 -7.341 -26.754 27.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.056 4.056 3 H 0.077 0.923 4 C -0.103 4.103 5 N -0.095 5.095 6 N -0.324 5.324 7 C 0.366 3.634 8 O -0.450 6.450 9 C -0.228 4.228 10 C -0.039 4.039 11 C -0.234 4.234 12 C 0.141 3.859 13 N -0.388 5.388 14 C -0.230 4.230 15 C -0.051 4.051 16 C 0.002 3.998 17 C -0.565 4.565 18 H 0.083 0.917 19 C -0.198 4.198 20 N -0.574 5.574 21 Si 0.785 3.215 22 H -0.185 1.185 23 H -0.203 1.203 24 H -0.211 1.211 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.151 0.849 29 H 0.239 0.761 30 H 0.140 0.860 31 H 0.167 0.833 32 H 0.242 0.758 33 H 0.243 0.757 34 H 0.174 0.826 35 H 0.159 0.841 36 H 0.031 0.969 37 H 0.002 0.998 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.493 -5.841 -26.880 27.729 hybrid contribution -0.175 -0.923 0.966 1.347 sum 3.319 -6.765 -25.915 26.988 Atomic orbital electron populations 1.21591 0.92038 1.02527 1.01641 1.20125 0.97363 0.98533 0.89570 0.92290 1.26533 0.91638 0.98894 0.93280 1.74437 1.12208 1.26553 0.96292 1.46832 1.51368 1.14379 1.19795 1.18716 0.76473 0.85873 0.82353 1.90731 1.58396 1.18671 1.77205 1.19374 1.09945 0.96535 0.96968 1.21010 0.91719 0.99483 0.91695 1.20720 1.08058 0.94249 1.00376 1.18113 0.89510 0.91178 0.87073 1.42496 1.57455 1.16055 1.22790 1.20800 1.04454 1.01999 0.95780 1.21227 0.95493 0.91639 0.96730 1.18963 0.94232 0.95443 0.91163 1.21624 1.34540 1.08671 0.91688 0.91691 1.25897 0.95260 0.96077 1.02535 1.70095 1.40215 1.22889 1.24246 0.85465 0.77921 0.78988 0.79082 1.18544 1.20260 1.21106 0.92069 0.92233 0.91677 0.84905 0.76109 0.86040 0.83286 0.75831 0.75674 0.82591 0.84052 0.96928 0.99848 0.92935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.12 8.99 71.98 0.65 -3.47 16 2 C -0.03 -1.43 2.75 -11.54 -0.03 -1.46 16 3 H 0.06 2.65 8.11 -2.39 -0.02 2.63 16 4 C 0.11 3.96 9.66 88.66 0.86 4.82 16 5 N -0.29 -11.52 10.93 -50.46 -0.55 -12.07 16 6 N -0.58 -18.72 6.20 -175.83 -1.09 -19.81 16 7 C 0.57 19.94 7.88 86.68 0.68 20.63 16 8 O -0.57 -25.36 16.67 -4.13 -0.07 -25.43 16 9 C -0.22 -5.62 5.88 -20.08 -0.12 -5.74 16 10 C -0.02 -0.44 9.58 22.50 0.22 -0.22 16 11 C -0.21 -3.31 9.87 22.36 0.22 -3.09 16 12 C 0.25 3.09 6.75 38.47 0.26 3.35 16 13 N -0.85 -4.03 9.06 -51.37 -0.47 -4.50 16 14 C -0.21 -2.67 9.87 22.36 0.22 -2.45 16 15 C -0.03 -0.55 9.53 22.50 0.21 -0.34 16 16 C 0.04 2.06 4.43 29.85 0.13 2.19 16 17 C -0.53 -29.22 8.41 25.60 0.22 -29.00 16 18 H 0.06 3.46 7.06 -2.91 -0.02 3.44 16 19 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 20 N -0.93 -56.23 13.29 21.45 0.28 -55.94 16 21 Si 0.96 44.25 29.54 68.60 2.03 46.28 16 22 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 23 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 24 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 25 H 0.06 2.25 6.95 -2.39 -0.02 2.23 16 26 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 27 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.13 3.75 8.00 -2.91 -0.02 3.73 16 29 H 0.40 9.21 6.65 -213.32 -1.42 7.80 16 30 H 0.12 3.07 7.64 -2.91 -0.02 3.04 16 31 H 0.15 1.58 8.06 -2.91 -0.02 1.55 16 32 H 0.41 0.60 8.83 -92.71 -0.82 -0.21 16 33 H 0.41 0.35 8.83 -92.70 -0.82 -0.47 16 34 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 35 H 0.14 1.86 6.39 -2.91 -0.02 1.84 16 36 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 37 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 38 H 0.26 14.85 8.31 -92.70 -0.77 14.08 16 Total: -1.00 -78.67 331.49 2.16 -76.51 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -1.95 Total: 9.31 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: 3.98 Total: -14.34 kcal Atomic # 7 Polarization: -90.50 SS G_CDS: -1.82 Total: -92.32 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -0.07 Total: -25.43 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -78.67 2.16 -76.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765992880.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.904 kcal (2) G-P(sol) polarization free energy of solvation -78.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds