Wall clock time and date at job start Mon Mar 30 2020 01:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.46718 * 2 1 4 4 C 1.50699 * 109.47109 * 120.00129 * 2 1 3 5 5 N 1.28006 * 120.00053 * 240.00072 * 4 2 1 6 6 N 1.40099 * 120.00108 * 180.02562 * 5 4 2 7 7 C 1.34782 * 120.00143 * 180.02562 * 6 5 4 8 8 O 1.21300 * 119.99526 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.00088 * 179.97438 * 7 6 5 10 10 C 1.50695 * 109.47115 * 179.97438 * 9 7 6 11 11 C 1.38678 * 120.41675 * 270.25421 * 10 9 7 12 12 C 1.38627 * 118.41930 * 180.24221 * 11 10 9 13 13 C 1.38232 * 119.16085 * 359.75178 * 12 11 10 14 14 N 1.31857 * 120.76541 * 359.97438 * 13 12 11 15 15 C 1.31889 * 121.72235 * 0.02562 * 14 13 12 16 16 C 1.53006 * 109.46813 * 240.00254 * 2 1 3 17 17 C 1.50697 * 109.47124 * 65.00098 * 16 2 1 18 18 H 1.07994 * 120.00337 * 359.97438 * 17 16 2 19 19 C 1.37875 * 119.99947 * 179.97438 * 17 16 2 20 20 N 1.31516 * 119.99771 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00368 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47252 * 89.99747 * 21 19 17 23 23 H 1.48503 * 109.47387 * 209.99678 * 21 19 17 24 24 H 1.48501 * 109.47289 * 330.00037 * 21 19 17 25 25 H 1.09006 * 109.47103 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47287 * 299.99918 * 1 2 3 27 27 H 1.09007 * 109.47308 * 59.99855 * 1 2 3 28 28 H 1.08003 * 119.99819 * 60.00044 * 4 2 1 29 29 H 0.97000 * 119.99853 * 359.97438 * 6 5 4 30 30 H 1.09001 * 109.46626 * 59.99898 * 9 7 6 31 31 H 1.08996 * 109.46931 * 299.99770 * 9 7 6 32 32 H 1.07994 * 120.78944 * 359.96926 * 11 10 9 33 33 H 1.07997 * 120.42083 * 179.72800 * 12 11 10 34 34 H 1.07999 * 119.61954 * 180.02562 * 13 12 11 35 35 H 1.08002 * 119.61237 * 179.97438 * 15 14 13 36 36 H 1.09001 * 109.46470 * 184.99755 * 16 2 1 37 37 H 1.09003 * 109.47096 * 304.99703 * 16 2 1 38 38 H 0.97000 * 120.00298 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 2.7682 -0.0884 2.0731 6 7 3.2357 -0.7490 3.2167 7 6 4.0101 -0.0938 4.1042 8 8 4.3027 1.0676 3.9124 9 6 4.5125 -0.8043 5.3346 10 6 5.3496 0.1429 6.1549 11 6 6.7153 0.2428 5.9356 12 6 7.4464 1.1237 6.7175 13 6 6.7936 1.8716 7.6794 14 7 5.4923 1.7546 7.8566 15 6 4.7653 0.9270 7.1313 16 6 2.0399 -0.7212 -1.2493 17 6 1.6413 0.0571 -2.4766 18 1 1.0800 0.9742 -2.3757 19 6 1.9931 -0.4016 -3.7283 20 7 2.6771 -1.5181 -3.8511 21 14 1.4984 0.5628 -5.2497 22 1 2.5631 1.5432 -5.5823 23 1 1.3122 -0.3713 -6.3890 24 1 0.2266 1.2832 -4.9872 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.7714 -1.7444 1.4013 29 1 3.0014 -1.6776 3.3701 30 1 5.1184 -1.6604 5.0378 31 1 3.6647 -1.1472 5.9277 32 1 7.1985 -0.3546 5.1767 33 1 8.5125 1.2240 6.5772 34 1 7.3559 2.5604 8.2925 35 1 3.7017 0.8580 7.3055 36 1 3.1263 -0.7994 -1.2057 37 1 1.6053 -1.7198 -1.2953 38 1 2.9250 -1.8407 -4.7317 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766019126.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:19 Heat of formation + Delta-G solvation = -0.932719 kcal Electronic energy + Delta-G solvation = -19508.031448 eV Core-core repulsion = 16349.976890 eV Total energy + Delta-G solvation = -3158.054558 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.40436 -40.33228 -38.40008 -36.34818 -34.64210 -34.31410 -32.91249 -32.20204 -29.07909 -28.65514 -25.95551 -24.53369 -24.14019 -22.97761 -21.69394 -20.59238 -18.93793 -18.12942 -18.04389 -17.91621 -17.47253 -16.52557 -16.18810 -16.09004 -15.43062 -14.98861 -14.83952 -14.54349 -14.51484 -14.23817 -13.96802 -13.80563 -13.37590 -13.04891 -12.83444 -12.72196 -12.51747 -12.45711 -12.23505 -11.78298 -11.38329 -11.27391 -11.21971 -10.90438 -10.70357 -10.51701 -10.43296 -9.94400 -9.82851 -8.16319 -6.24432 0.10779 0.34383 0.87608 1.43490 1.44503 1.54710 1.60945 1.83896 2.44887 2.85579 3.18497 3.44190 3.64852 3.77280 3.89806 3.90553 4.05327 4.10015 4.12054 4.45122 4.47303 4.52169 4.58094 4.71378 4.73739 4.85801 5.01672 5.16912 5.21845 5.27645 5.29860 5.48445 5.53773 5.73984 5.76793 5.87398 6.18908 6.28030 6.58779 6.90109 7.01181 7.43625 7.48447 8.95627 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.033524 B = 0.002642 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.015190 B =10593.624329 C =10864.933008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.036 4.036 3 H 0.057 0.943 4 C 0.112 3.888 5 N -0.297 5.297 6 N -0.583 5.583 7 C 0.525 3.475 8 O -0.562 6.562 9 C -0.078 4.078 10 C -0.130 4.130 11 C -0.074 4.074 12 C -0.173 4.173 13 C 0.082 3.918 14 N -0.516 5.516 15 C 0.095 3.905 16 C 0.041 3.959 17 C -0.529 4.529 18 H 0.064 0.936 19 C 0.002 3.998 20 N -0.933 5.933 21 Si 0.958 3.042 22 H -0.280 1.280 23 H -0.283 1.283 24 H -0.261 1.261 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.135 0.865 29 H 0.404 0.596 30 H 0.142 0.858 31 H 0.146 0.854 32 H 0.150 0.850 33 H 0.162 0.838 34 H 0.177 0.823 35 H 0.163 0.837 36 H -0.016 1.016 37 H 0.012 0.988 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.261 -3.184 22.162 22.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.057 4.057 3 H 0.075 0.925 4 C -0.102 4.102 5 N -0.099 5.099 6 N -0.326 5.326 7 C 0.314 3.686 8 O -0.437 6.437 9 C -0.119 4.119 10 C -0.132 4.132 11 C -0.100 4.100 12 C -0.192 4.192 13 C -0.074 4.074 14 N -0.225 5.225 15 C -0.061 4.061 16 C 0.003 3.997 17 C -0.567 4.567 18 H 0.082 0.918 19 C -0.196 4.196 20 N -0.574 5.574 21 Si 0.783 3.217 22 H -0.206 1.206 23 H -0.209 1.209 24 H -0.185 1.185 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.152 0.848 29 H 0.244 0.756 30 H 0.160 0.840 31 H 0.163 0.837 32 H 0.168 0.832 33 H 0.180 0.820 34 H 0.194 0.806 35 H 0.180 0.820 36 H 0.002 0.998 37 H 0.031 0.969 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.632 -1.158 22.930 23.422 hybrid contribution 0.046 -1.292 -1.838 2.247 sum 4.678 -2.450 21.092 21.743 Atomic orbital electron populations 1.21589 0.92208 1.02495 1.01551 1.20112 0.97257 0.98476 0.89845 0.92485 1.26458 0.91691 0.98855 0.93192 1.74450 1.12164 1.26722 0.96604 1.47002 1.51273 1.14694 1.19661 1.21396 0.76539 0.86823 0.83832 1.90733 1.57078 1.19202 1.76725 1.20650 1.02312 0.97776 0.91172 1.20467 0.95100 0.99715 0.97947 1.21856 0.93581 0.97035 0.97497 1.22460 1.02911 0.97136 0.96720 1.23250 0.90295 0.97444 0.96400 1.67683 1.08670 1.19037 1.27098 1.22898 1.00556 0.90937 0.91749 1.18952 0.94235 0.95398 0.91137 1.21599 1.34628 1.08684 0.91786 0.91820 1.25868 0.95258 0.96032 1.02452 1.70077 1.40130 1.22838 1.24328 0.85551 0.79002 0.78368 0.78772 1.20571 1.20855 1.18473 0.91678 0.92225 0.92302 0.84810 0.75560 0.84005 0.83667 0.83244 0.82044 0.80584 0.81957 0.99783 0.96948 0.92914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.98 8.98 71.98 0.65 -3.33 16 2 C -0.04 -1.40 2.75 -11.54 -0.03 -1.43 16 3 H 0.06 2.47 8.11 -2.39 -0.02 2.45 16 4 C 0.11 3.68 9.66 88.67 0.86 4.54 16 5 N -0.30 -10.47 10.92 -50.46 -0.55 -11.03 16 6 N -0.58 -14.86 6.25 -173.51 -1.08 -15.94 16 7 C 0.53 13.73 7.94 87.66 0.70 14.42 16 8 O -0.56 -21.44 16.37 -3.09 -0.05 -21.49 16 9 C -0.08 -1.07 5.85 29.10 0.17 -0.90 16 10 C -0.13 -2.46 4.39 -19.77 -0.09 -2.55 16 11 C -0.07 -1.32 9.86 22.47 0.22 -1.09 16 12 C -0.17 -2.83 10.11 22.36 0.23 -2.61 16 13 C 0.08 1.55 11.18 84.69 0.95 2.50 16 14 N -0.52 -12.18 10.36 -195.83 -2.03 -14.21 16 15 C 0.10 2.03 10.86 84.67 0.92 2.95 16 16 C 0.04 2.03 4.43 29.85 0.13 2.17 16 17 C -0.53 -28.77 8.41 25.60 0.22 -28.56 16 18 H 0.06 3.33 7.06 -2.91 -0.02 3.31 16 19 C 0.00 0.08 5.46 84.65 0.46 0.55 16 20 N -0.93 -55.27 13.29 21.45 0.28 -54.99 16 21 Si 0.96 43.57 29.54 68.60 2.03 45.59 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 23 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 24 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 25 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 26 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.06 2.12 6.95 -2.38 -0.02 2.10 16 28 H 0.13 3.38 8.00 -2.91 -0.02 3.36 16 29 H 0.40 6.42 8.63 -213.32 -1.84 4.58 16 30 H 0.14 1.03 8.10 -2.39 -0.02 1.01 16 31 H 0.15 0.97 8.09 -2.39 -0.02 0.95 16 32 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 33 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 34 H 0.18 2.24 8.06 -2.91 -0.02 2.22 16 35 H 0.16 2.84 8.06 -2.91 -0.02 2.81 16 36 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 37 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -79.31 335.99 3.19 -76.12 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -0.78 Total: 9.30 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: 5.37 Total: -13.34 kcal Atomic # 7 Polarization: -92.79 SS G_CDS: -3.38 Total: -96.17 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -0.05 Total: -21.49 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -79.31 3.19 -76.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766019126.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.186 kcal (2) G-P(sol) polarization free energy of solvation -79.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds