Wall clock time and date at job start Mon Mar 30 2020 01:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47531 * 2 1 4 4 C 1.50700 * 109.46858 * 120.00164 * 2 1 3 5 5 H 1.08002 * 120.00285 * 119.99923 * 4 2 1 6 6 C 1.37875 * 120.00085 * 299.99691 * 4 2 1 7 7 N 1.31519 * 119.99840 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00186 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.46984 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47293 * 120.00261 * 8 6 4 11 11 H 1.48504 * 109.46934 * 240.00118 * 8 6 4 12 12 N 1.46898 * 109.47046 * 239.99940 * 2 1 3 13 13 C 1.46897 * 111.00047 * 69.92629 * 12 2 1 14 14 C 1.46903 * 111.00256 * 305.96991 * 12 2 1 15 15 N 1.46492 * 109.47258 * 208.48019 * 14 12 2 16 16 C 1.46723 * 125.63238 * 90.00123 * 15 14 12 17 17 C 1.50952 * 106.31040 * 179.97438 * 16 15 14 18 18 N 1.31450 * 133.02120 * 179.97438 * 17 16 15 19 19 C 1.32012 * 121.73613 * 180.02562 * 18 17 16 20 20 C 1.38359 * 121.09431 * 359.97438 * 19 18 17 21 21 C 1.38413 * 119.36389 * 0.02562 * 20 19 18 22 22 C 1.39631 * 106.24042 * 0.02562 * 17 16 15 23 23 C 1.34448 * 125.63134 * 269.69120 * 15 14 12 24 24 O 1.21550 * 124.88646 * 359.96829 * 23 15 14 25 25 H 1.09004 * 109.47207 * 306.00115 * 1 2 3 26 26 H 1.08999 * 109.46810 * 65.99647 * 1 2 3 27 27 H 1.08996 * 109.47587 * 186.00097 * 1 2 3 28 28 H 0.96999 * 119.99803 * 179.97438 * 7 6 4 29 29 H 1.08998 * 109.46975 * 59.99705 * 13 12 2 30 30 H 1.09002 * 109.46932 * 300.00048 * 13 12 2 31 31 H 1.08999 * 109.47027 * 180.02562 * 13 12 2 32 32 H 1.09005 * 109.46561 * 328.48486 * 14 12 2 33 33 H 1.08998 * 109.46857 * 88.47553 * 14 12 2 34 34 H 1.09000 * 110.08318 * 299.21199 * 16 15 14 35 35 H 1.09003 * 110.08631 * 60.72974 * 16 15 14 36 36 H 1.08004 * 119.45343 * 180.02562 * 19 18 17 37 37 H 1.08000 * 120.31769 * 179.97438 * 20 19 18 38 38 H 1.08005 * 120.89828 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8297 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.1472 -2.2864 3.6038 10 1 3.1471 -0.1859 4.8162 11 1 1.1676 -1.5866 4.8165 12 7 2.0196 -0.6925 -1.1994 13 6 1.7513 0.0964 -2.4092 14 6 1.4357 -2.0362 -1.3069 15 7 2.3628 -2.9157 -2.0230 16 6 3.4138 -3.7333 -1.4067 17 6 4.1013 -4.4616 -2.5361 18 7 5.0992 -5.3163 -2.5761 19 6 5.5307 -5.8271 -3.7144 20 6 4.9459 -5.4818 -4.9198 21 6 3.8914 -4.5853 -4.9304 22 6 3.4577 -4.0605 -3.7085 23 6 2.3874 -3.1116 -3.3529 24 8 1.6364 -2.5809 -4.1477 25 1 -0.3634 0.6041 0.8314 26 1 -0.3633 0.4180 -0.9388 27 1 -0.3634 -1.0220 0.1074 28 1 0.7081 1.1608 3.4844 29 1 2.2535 1.0607 -2.3328 30 1 0.6773 0.2530 -2.5100 31 1 2.1235 -0.4395 -3.2823 32 1 1.2547 -2.4345 -0.3085 33 1 0.4935 -1.9803 -1.8520 34 1 4.1260 -3.0952 -0.8837 35 1 2.9728 -4.4489 -0.7127 36 1 6.3534 -6.5268 -3.7044 37 1 5.3093 -5.9070 -5.8437 38 1 3.4163 -4.2987 -5.8571 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785506192.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:31 Heat of formation + Delta-G solvation = 35.905575 kcal Electronic energy + Delta-G solvation = -21361.187405 eV Core-core repulsion = 18204.730276 eV Total energy + Delta-G solvation = -3156.457129 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.33010 -38.90199 -37.04115 -35.74698 -32.85494 -32.66656 -31.27142 -28.82223 -27.20130 -26.70232 -25.34370 -24.22591 -22.77752 -22.45856 -20.12700 -19.14377 -17.13780 -16.97383 -16.51636 -16.45778 -15.83470 -15.24940 -14.86385 -14.25466 -14.03193 -13.82103 -13.41205 -13.35114 -13.10438 -13.07194 -12.80869 -12.29919 -12.14687 -11.90894 -11.42336 -11.08450 -10.90793 -10.72761 -10.53294 -10.27268 -10.13961 -10.10414 -9.98604 -9.29354 -9.25473 -9.02846 -8.61168 -8.42199 -7.35420 -6.09395 -4.14399 0.51851 1.00314 2.85805 3.00661 3.25406 3.34256 3.37040 3.60458 3.74420 4.34807 4.39290 4.59079 4.74579 4.83757 5.05147 5.12120 5.23241 5.26450 5.50879 5.66954 5.75373 5.78086 5.87581 6.01747 6.18214 6.22740 6.35662 6.52420 6.66728 6.70018 6.79051 7.02470 7.19301 7.37944 7.59214 7.67867 7.75070 7.99917 8.21437 8.36974 8.46156 8.91305 9.51741 10.97842 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022651 B = 0.005157 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.851980 B = 5428.631012 C = 6444.411472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.214 3.786 3 H 0.044 0.956 4 C -0.507 4.507 5 H 0.063 0.937 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.896 3.104 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.285 1.285 12 N -0.550 5.550 13 C 0.027 3.973 14 C 0.303 3.697 15 N -0.589 5.589 16 C 0.152 3.848 17 C 0.145 3.855 18 N -0.473 5.473 19 C 0.128 3.872 20 C -0.187 4.187 21 C -0.007 4.007 22 C -0.209 4.209 23 C 0.559 3.441 24 O -0.531 6.531 25 H 0.087 0.913 26 H 0.011 0.989 27 H 0.030 0.970 28 H 0.261 0.739 29 H 0.057 0.943 30 H 0.022 0.978 31 H 0.057 0.943 32 H 0.111 0.889 33 H 0.058 0.942 34 H 0.115 0.885 35 H 0.106 0.894 36 H 0.164 0.836 37 H 0.143 0.857 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.891 -11.524 -11.215 17.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.108 3.892 3 H 0.062 0.938 4 C -0.546 4.546 5 H 0.081 0.919 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.724 3.276 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.211 1.211 12 N -0.275 5.275 13 C -0.122 4.122 14 C 0.093 3.907 15 N -0.322 5.322 16 C 0.028 3.972 17 C 0.006 3.994 18 N -0.183 5.183 19 C -0.029 4.029 20 C -0.207 4.207 21 C -0.033 4.033 22 C -0.214 4.214 23 C 0.346 3.654 24 O -0.409 6.409 25 H 0.106 0.894 26 H 0.030 0.970 27 H 0.049 0.951 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.040 0.960 31 H 0.075 0.925 32 H 0.129 0.871 33 H 0.076 0.924 34 H 0.133 0.867 35 H 0.124 0.876 36 H 0.182 0.818 37 H 0.161 0.839 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.226 -11.315 -10.564 16.686 hybrid contribution -0.805 -0.025 -0.038 0.806 sum 5.421 -11.341 -10.602 16.444 Atomic orbital electron populations 1.22448 1.00416 1.00346 0.99883 1.19337 0.89900 0.94697 0.85224 0.93789 1.21104 1.31094 1.12777 0.89593 0.91902 1.24927 0.95013 0.95032 0.99043 1.69906 1.36647 1.22875 1.23494 0.86477 0.78572 0.79696 0.82883 1.19627 1.21032 1.21134 1.61942 1.59718 1.01974 1.03912 1.22359 0.98658 0.98053 0.93143 1.21873 0.86390 0.85739 0.96663 1.48356 1.34228 1.43113 1.06500 1.20346 0.90480 0.93942 0.92475 1.21747 0.90714 0.91673 0.95311 1.66704 1.11824 1.09375 1.30349 1.22929 0.97293 0.95764 0.86924 1.22094 0.98106 1.00264 1.00223 1.21307 0.93204 0.91634 0.97180 1.21530 1.01306 1.02700 0.95885 1.18001 0.83249 0.81190 0.82984 1.90747 1.44246 1.52609 1.53292 0.89418 0.96968 0.95093 0.92923 0.92399 0.95998 0.92466 0.87101 0.92411 0.86721 0.87600 0.81840 0.83898 0.84075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.97 8.25 37.16 0.31 -3.66 16 2 C 0.21 5.15 2.29 -68.87 -0.16 4.99 16 3 H 0.04 1.18 8.06 -51.93 -0.42 0.76 16 4 C -0.51 -12.95 7.60 -34.44 -0.26 -13.21 16 5 H 0.06 1.58 7.45 -52.49 -0.39 1.19 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.89 -24.33 11.39 55.43 0.63 -23.70 16 8 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 9 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 N -0.55 -11.66 4.80 -240.20 -1.15 -12.81 16 13 C 0.03 0.52 9.21 60.06 0.55 1.08 16 14 C 0.30 5.80 4.35 -63.32 -0.28 5.53 16 15 N -0.59 -10.13 3.21 -179.64 -0.58 -10.71 16 16 C 0.15 2.22 7.38 -4.95 -0.04 2.18 16 17 C 0.15 2.06 7.56 -82.11 -0.62 1.43 16 18 N -0.47 -6.15 10.35 -9.07 -0.09 -6.24 16 19 C 0.13 1.23 11.17 -17.43 -0.19 1.04 16 20 C -0.19 -1.65 10.10 -39.47 -0.40 -2.05 16 21 C -0.01 -0.08 10.23 -38.90 -0.40 -0.47 16 22 C -0.21 -3.06 6.28 -105.04 -0.66 -3.72 16 23 C 0.56 9.85 7.44 -12.68 -0.09 9.75 16 24 O -0.53 -10.73 16.43 5.32 0.09 -10.64 16 25 H 0.09 2.24 6.25 -51.93 -0.32 1.91 16 26 H 0.01 0.25 6.46 -51.93 -0.34 -0.09 16 27 H 0.03 0.68 7.06 -51.93 -0.37 0.31 16 28 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 29 H 0.06 1.11 8.12 -51.93 -0.42 0.68 16 30 H 0.02 0.43 6.49 -51.93 -0.34 0.09 16 31 H 0.06 1.14 6.20 -51.93 -0.32 0.81 16 32 H 0.11 2.17 6.26 -51.93 -0.33 1.85 16 33 H 0.06 1.14 7.63 -51.93 -0.40 0.74 16 34 H 0.12 1.73 8.14 -51.93 -0.42 1.31 16 35 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.16 0.99 8.06 -52.48 -0.42 0.56 16 37 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 38 H 0.14 1.40 8.06 -52.48 -0.42 0.98 16 LS Contribution 312.96 15.07 4.72 4.72 Total: -1.00 -30.00 312.96 -8.63 -38.63 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -4.89 Total: 1.05 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: -2.33 Total: 4.41 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: -1.19 Total: -53.47 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.09 Total: -10.64 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.00 -8.63 -38.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785506192.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.533 kcal (2) G-P(sol) polarization free energy of solvation -29.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds