Wall clock time and date at job start Mon Mar 30 2020 01:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47531 * 2 1 4 4 C 1.50700 * 109.46858 * 120.00164 * 2 1 3 5 5 H 1.08002 * 120.00285 * 119.99923 * 4 2 1 6 6 C 1.37875 * 120.00085 * 299.99691 * 4 2 1 7 7 N 1.31519 * 119.99840 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00186 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.46984 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47293 * 120.00261 * 8 6 4 11 11 H 1.48504 * 109.46934 * 240.00118 * 8 6 4 12 12 N 1.46898 * 109.47046 * 239.99940 * 2 1 3 13 13 C 1.46897 * 111.00047 * 69.92629 * 12 2 1 14 14 C 1.46903 * 111.00256 * 305.96991 * 12 2 1 15 15 N 1.46492 * 109.47258 * 208.48019 * 14 12 2 16 16 C 1.46723 * 125.63238 * 90.00123 * 15 14 12 17 17 C 1.50952 * 106.31040 * 179.97438 * 16 15 14 18 18 N 1.31450 * 133.02120 * 179.97438 * 17 16 15 19 19 C 1.32012 * 121.73613 * 180.02562 * 18 17 16 20 20 C 1.38359 * 121.09431 * 359.97438 * 19 18 17 21 21 C 1.38413 * 119.36389 * 0.02562 * 20 19 18 22 22 C 1.39631 * 106.24042 * 0.02562 * 17 16 15 23 23 C 1.34448 * 125.63134 * 269.69120 * 15 14 12 24 24 O 1.21550 * 124.88646 * 359.96829 * 23 15 14 25 25 H 1.09004 * 109.47207 * 306.00115 * 1 2 3 26 26 H 1.08999 * 109.46810 * 65.99647 * 1 2 3 27 27 H 1.08996 * 109.47587 * 186.00097 * 1 2 3 28 28 H 0.96999 * 119.99803 * 179.97438 * 7 6 4 29 29 H 1.08998 * 109.46975 * 59.99705 * 13 12 2 30 30 H 1.09002 * 109.46932 * 300.00048 * 13 12 2 31 31 H 1.08999 * 109.47027 * 180.02562 * 13 12 2 32 32 H 1.09005 * 109.46561 * 328.48486 * 14 12 2 33 33 H 1.08998 * 109.46857 * 88.47553 * 14 12 2 34 34 H 1.09000 * 110.08318 * 299.21199 * 16 15 14 35 35 H 1.09003 * 110.08631 * 60.72974 * 16 15 14 36 36 H 1.08004 * 119.45343 * 180.02562 * 19 18 17 37 37 H 1.08000 * 120.31769 * 179.97438 * 20 19 18 38 38 H 1.08005 * 120.89828 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8297 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.1472 -2.2864 3.6038 10 1 3.1471 -0.1859 4.8162 11 1 1.1676 -1.5866 4.8165 12 7 2.0196 -0.6925 -1.1994 13 6 1.7513 0.0964 -2.4092 14 6 1.4357 -2.0362 -1.3069 15 7 2.3628 -2.9157 -2.0230 16 6 3.4138 -3.7333 -1.4067 17 6 4.1013 -4.4616 -2.5361 18 7 5.0992 -5.3163 -2.5761 19 6 5.5307 -5.8271 -3.7144 20 6 4.9459 -5.4818 -4.9198 21 6 3.8914 -4.5853 -4.9304 22 6 3.4577 -4.0605 -3.7085 23 6 2.3874 -3.1116 -3.3529 24 8 1.6364 -2.5809 -4.1477 25 1 -0.3634 0.6041 0.8314 26 1 -0.3633 0.4180 -0.9388 27 1 -0.3634 -1.0220 0.1074 28 1 0.7081 1.1608 3.4844 29 1 2.2535 1.0607 -2.3328 30 1 0.6773 0.2530 -2.5100 31 1 2.1235 -0.4395 -3.2823 32 1 1.2547 -2.4345 -0.3085 33 1 0.4935 -1.9803 -1.8520 34 1 4.1260 -3.0952 -0.8837 35 1 2.9728 -4.4489 -0.7127 36 1 6.3534 -6.5268 -3.7044 37 1 5.3093 -5.9070 -5.8437 38 1 3.4163 -4.2987 -5.8571 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785506192.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:30 Heat of formation + Delta-G solvation = 15.624689 kcal Electronic energy + Delta-G solvation = -21362.066850 eV Core-core repulsion = 18204.730276 eV Total energy + Delta-G solvation = -3157.336575 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.43192 -40.09786 -38.71420 -37.07742 -34.74437 -33.57293 -32.50376 -30.64347 -28.45052 -28.02535 -27.24176 -25.69447 -24.19279 -23.41235 -21.61648 -20.69486 -18.45909 -18.30914 -18.04384 -17.40132 -17.22357 -16.77457 -16.35427 -15.74831 -15.55613 -15.01354 -14.83867 -14.70281 -14.48695 -14.03383 -13.95009 -13.93446 -13.79495 -13.24467 -13.18541 -12.81319 -12.64188 -12.51671 -12.34534 -12.15726 -11.86594 -11.40917 -11.02747 -10.97711 -10.52345 -10.33049 -10.17059 -9.92930 -9.08368 -8.09708 -6.20858 -0.44042 0.13964 1.45704 1.49034 1.58976 1.61487 1.77422 2.45348 2.61617 2.76221 3.20787 3.27701 3.38195 3.73665 3.91381 3.98771 4.12879 4.33162 4.36885 4.40852 4.47832 4.53825 4.58369 4.62656 4.74428 4.85238 4.89205 4.98079 5.06024 5.06830 5.34809 5.45134 5.57484 5.65236 5.77919 5.92782 6.12576 6.37191 6.58997 6.79516 6.89378 6.99740 7.48972 8.97226 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022651 B = 0.005157 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.851980 B = 5428.631012 C = 6444.411472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.220 3.780 3 H 0.011 0.989 4 C -0.514 4.514 5 H 0.065 0.935 6 C 0.016 3.984 7 N -0.920 5.920 8 Si 0.958 3.042 9 H -0.261 1.261 10 H -0.287 1.287 11 H -0.283 1.283 12 N -0.556 5.556 13 C 0.035 3.965 14 C 0.312 3.688 15 N -0.593 5.593 16 C 0.151 3.849 17 C 0.139 3.861 18 N -0.494 5.494 19 C 0.133 3.867 20 C -0.166 4.166 21 C -0.012 4.012 22 C -0.236 4.236 23 C 0.552 3.448 24 O -0.568 6.568 25 H 0.063 0.937 26 H 0.023 0.977 27 H 0.035 0.965 28 H 0.261 0.739 29 H 0.060 0.940 30 H 0.021 0.979 31 H 0.056 0.944 32 H 0.106 0.894 33 H 0.051 0.949 34 H 0.107 0.893 35 H 0.122 0.878 36 H 0.206 0.794 37 H 0.189 0.811 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.732 -14.051 -12.160 20.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.114 3.886 3 H 0.029 0.971 4 C -0.553 4.553 5 H 0.083 0.917 6 C -0.183 4.183 7 N -0.560 5.560 8 Si 0.784 3.216 9 H -0.185 1.185 10 H -0.213 1.213 11 H -0.209 1.209 12 N -0.281 5.281 13 C -0.113 4.113 14 C 0.102 3.898 15 N -0.326 5.326 16 C 0.027 3.973 17 C 0.000 4.000 18 N -0.203 5.203 19 C -0.023 4.023 20 C -0.185 4.185 21 C -0.038 4.038 22 C -0.242 4.242 23 C 0.341 3.659 24 O -0.449 6.449 25 H 0.082 0.918 26 H 0.042 0.958 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.040 0.960 31 H 0.075 0.925 32 H 0.124 0.876 33 H 0.069 0.931 34 H 0.125 0.875 35 H 0.140 0.860 36 H 0.223 0.777 37 H 0.206 0.794 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 8.089 -13.871 -11.517 19.760 hybrid contribution -1.289 0.688 0.141 1.468 sum 6.800 -13.183 -11.375 18.693 Atomic orbital electron populations 1.22254 0.99838 1.00168 0.99447 1.19097 0.90215 0.93126 0.86206 0.97062 1.21340 1.30896 1.12756 0.90262 0.91705 1.25663 0.95205 0.95658 1.01797 1.70034 1.37726 1.24172 1.24030 0.85498 0.78015 0.78775 0.79301 1.18522 1.21289 1.20902 1.61894 1.60019 1.02800 1.03422 1.22279 0.98613 0.97983 0.92470 1.21625 0.86697 0.84971 0.96497 1.48276 1.34537 1.42914 1.06831 1.20401 0.89847 0.93912 0.93108 1.21525 0.91497 0.92519 0.94473 1.66759 1.11649 1.09629 1.32299 1.23749 0.97402 0.94968 0.86190 1.22569 0.95971 0.98124 1.01810 1.21650 0.93920 0.91797 0.96428 1.21390 1.01397 1.03712 0.97665 1.18519 0.83476 0.81260 0.82625 1.90706 1.45844 1.54256 1.54069 0.91794 0.95766 0.94578 0.92987 0.92108 0.96024 0.92547 0.87605 0.93128 0.87550 0.86031 0.77696 0.79367 0.82916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.44 8.25 71.98 0.59 -6.85 16 2 C 0.22 10.84 2.29 44.17 0.10 10.94 16 3 H 0.01 0.63 8.06 -2.39 -0.02 0.61 16 4 C -0.51 -26.52 7.60 25.60 0.19 -26.32 16 5 H 0.06 3.26 7.45 -2.91 -0.02 3.23 16 6 C 0.02 0.83 5.30 84.65 0.45 1.28 16 7 N -0.92 -51.11 11.39 21.45 0.24 -50.87 16 8 Si 0.96 41.66 29.54 68.60 2.03 43.68 16 9 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 10 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 12 N -0.56 -24.03 4.80 -913.86 -4.39 -28.42 16 13 C 0.04 1.41 9.21 127.69 1.18 2.59 16 14 C 0.31 12.19 4.35 170.81 0.74 12.93 16 15 N -0.59 -20.71 3.21 -840.71 -2.70 -23.40 16 16 C 0.15 4.38 7.38 85.67 0.63 5.02 16 17 C 0.14 3.78 7.56 43.03 0.33 4.10 16 18 N -0.49 -11.57 10.35 -182.59 -1.89 -13.46 16 19 C 0.13 1.99 11.17 84.69 0.95 2.94 16 20 C -0.17 -2.15 10.10 22.34 0.23 -1.93 16 21 C -0.01 -0.24 10.23 22.71 0.23 0.00 16 22 C -0.24 -6.71 6.28 -20.13 -0.13 -6.84 16 23 C 0.55 19.69 7.44 86.71 0.65 20.33 16 24 O -0.57 -23.44 16.43 -3.87 -0.06 -23.50 16 25 H 0.06 3.34 6.25 -2.38 -0.01 3.32 16 26 H 0.02 1.04 6.46 -2.39 -0.02 1.02 16 27 H 0.04 1.61 7.06 -2.39 -0.02 1.60 16 28 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 29 H 0.06 2.37 8.12 -2.39 -0.02 2.35 16 30 H 0.02 0.86 6.49 -2.39 -0.02 0.84 16 31 H 0.06 2.29 6.20 -2.39 -0.01 2.27 16 32 H 0.11 4.21 6.26 -2.38 -0.01 4.19 16 33 H 0.05 2.04 7.63 -2.39 -0.02 2.02 16 34 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 35 H 0.12 3.05 8.14 -2.39 -0.02 3.03 16 36 H 0.21 1.28 8.06 -2.91 -0.02 1.25 16 37 H 0.19 0.77 8.06 -2.91 -0.02 0.75 16 38 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -66.11 312.96 0.44 -65.66 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: 1.07 Total: 12.10 kcal Atomic # 6 Polarization: 12.06 SS G_CDS: 6.14 Total: 18.20 kcal Atomic # 7 Polarization: -107.42 SS G_CDS: -8.73 Total: -116.15 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.06 Total: -23.50 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.68 kcal Total: -66.11 0.44 -65.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785506192.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.287 kcal (2) G-P(sol) polarization free energy of solvation -66.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds