Wall clock time and date at job start Mon Mar 30 2020 02:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36941 * 119.99773 * 2 1 4 4 H 1.08006 * 119.99785 * 321.85974 * 3 2 1 5 5 C 1.38804 * 120.00211 * 141.86523 * 3 2 1 6 6 N 1.31626 * 119.99920 * 159.01225 * 5 3 2 7 7 Si 1.86797 * 120.00002 * 339.00804 * 5 3 2 8 8 H 1.48501 * 109.46793 * 95.29732 * 7 5 3 9 9 H 1.48505 * 109.47143 * 215.29543 * 7 5 3 10 10 H 1.48495 * 109.47200 * 335.29689 * 7 5 3 11 11 C 1.46495 * 120.00347 * 179.97438 * 2 1 3 12 12 N 1.46499 * 109.47028 * 89.99909 * 11 2 1 13 13 C 1.47054 * 125.41398 * 270.21658 * 12 11 2 14 14 C 1.54106 * 103.86440 * 180.22855 * 13 12 11 15 15 N 1.47052 * 103.86045 * 359.77073 * 14 13 12 16 16 C 1.39948 * 125.40904 * 180.02562 * 15 14 13 17 17 C 1.38863 * 120.07071 * 354.14076 * 16 15 14 18 18 C 1.38108 * 119.93117 * 179.74768 * 17 16 15 19 19 C 1.38284 * 120.06838 * 0.53705 * 18 17 16 20 20 C 1.38277 * 120.14026 * 359.73510 * 19 18 17 21 21 C 1.38115 * 120.07159 * 359.97438 * 20 19 18 22 22 C 1.33949 * 125.40960 * 90.02246 * 12 11 2 23 23 O 1.21589 * 123.04172 * 0.02562 * 22 12 11 24 24 H 1.08997 * 109.46975 * 275.08148 * 1 2 3 25 25 H 1.08999 * 109.47227 * 35.08395 * 1 2 3 26 26 H 1.09001 * 109.46899 * 155.08674 * 1 2 3 27 27 H 0.97002 * 119.99399 * 179.97438 * 6 5 3 28 28 H 1.08999 * 109.47300 * 330.00286 * 11 2 1 29 29 H 1.08997 * 109.47548 * 210.00334 * 11 2 1 30 30 H 1.09000 * 110.74495 * 61.53915 * 13 12 11 31 31 H 1.09001 * 110.47528 * 298.78644 * 13 12 11 32 32 H 1.08998 * 110.54696 * 241.17242 * 14 13 12 33 33 H 1.09000 * 110.66799 * 118.42040 * 14 13 12 34 34 H 1.08003 * 120.03308 * 0.03097 * 17 16 15 35 35 H 1.08006 * 119.96803 * 180.29563 * 18 17 16 36 36 H 1.07996 * 119.92932 * 179.72220 * 19 18 17 37 37 H 1.08004 * 119.96766 * 180.02562 * 20 19 18 38 38 H 1.08000 * 120.03954 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 1.7826 2.0214 -0.5777 5 6 3.3155 1.3144 0.7423 6 7 4.1850 2.2567 0.4445 7 14 3.6506 0.1499 2.1639 8 1 4.5013 -0.9729 1.6941 9 1 4.3522 0.8822 3.2488 10 1 2.3648 -0.3852 2.6791 11 6 2.1976 -1.2686 0.0006 12 7 2.4418 -1.6921 -1.3805 13 6 1.5438 -2.5341 -2.1850 14 6 2.2767 -2.6720 -3.5336 15 7 3.5071 -1.8885 -3.3476 16 6 4.5085 -1.7111 -4.3090 17 6 4.4448 -2.3969 -5.5148 18 6 5.4319 -2.2157 -6.4636 19 6 6.4888 -1.3610 -6.2093 20 6 6.5581 -0.6809 -5.0073 21 6 5.5710 -0.8532 -4.0568 22 6 3.5167 -1.3709 -2.1122 23 8 4.4221 -0.6771 -1.6912 24 1 -0.3633 0.0910 1.0236 25 1 -0.3633 0.8409 -0.5907 26 1 -0.3633 -0.9321 -0.4329 27 1 4.9995 2.3466 0.9635 28 1 1.6086 -2.0281 0.5147 29 1 3.1500 -1.1381 0.5144 30 1 0.5782 -2.0473 -2.3223 31 1 1.4159 -3.5104 -1.7175 32 1 1.6749 -2.2538 -4.3405 33 1 2.5150 -3.7160 -3.7369 34 1 3.6218 -3.0678 -5.7123 35 1 5.3804 -2.7452 -7.4035 36 1 7.2618 -1.2244 -6.9510 37 1 7.3846 -0.0137 -4.8119 38 1 5.6258 -0.3221 -3.1180 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808149584.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:38 Heat of formation + Delta-G solvation = 65.672113 kcal Electronic energy + Delta-G solvation = -21858.958387 eV Core-core repulsion = 18703.792032 eV Total energy + Delta-G solvation = -3155.166356 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.92711 -38.51293 -36.03366 -35.79297 -33.59730 -31.51304 -30.63963 -29.87183 -28.30768 -26.59697 -25.55388 -23.46171 -22.67170 -21.43680 -20.98077 -19.50878 -17.52403 -16.92192 -16.40535 -16.19845 -15.81991 -14.94660 -14.56237 -14.30553 -13.93321 -13.73954 -13.48324 -13.40136 -13.06598 -13.00267 -12.64879 -12.57442 -12.04577 -11.97823 -11.93047 -11.41491 -11.40018 -10.92961 -10.87371 -10.56301 -10.03264 -9.90286 -9.64879 -9.08090 -8.69843 -8.52544 -8.20025 -7.47835 -7.02647 -5.93590 -3.41022 1.61151 1.69014 2.77441 3.35212 3.44459 3.48131 3.72669 4.13147 4.19760 4.55273 4.59631 4.93033 4.93359 5.15591 5.16724 5.26402 5.34855 5.45534 5.51127 5.62528 5.67542 5.83340 5.85385 5.88184 6.10438 6.12536 6.28226 6.42222 6.51710 6.60100 6.63011 6.85871 6.90089 7.05588 7.41550 7.50073 8.03234 8.15252 8.40761 8.91916 9.20609 9.71877 10.02541 11.21434 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.021525 B = 0.006486 C = 0.005454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.478089 B = 4315.934723 C = 5132.765330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.593 5.593 3 C -0.288 4.288 4 H 0.075 0.925 5 C 0.062 3.938 6 N -0.879 5.879 7 Si 0.869 3.131 8 H -0.280 1.280 9 H -0.297 1.297 10 H -0.269 1.269 11 C 0.367 3.633 12 N -0.628 5.628 13 C 0.089 3.911 14 C 0.092 3.908 15 N -0.580 5.580 16 C 0.205 3.795 17 C -0.174 4.174 18 C -0.096 4.096 19 C -0.162 4.162 20 C -0.089 4.089 21 C -0.156 4.156 22 C 0.691 3.309 23 O -0.533 6.533 24 H 0.018 0.982 25 H 0.040 0.960 26 H 0.030 0.970 27 H 0.264 0.736 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.116 0.884 37 H 0.123 0.877 38 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.153 -12.972 -10.416 16.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.316 5.316 3 C -0.416 4.416 4 H 0.093 0.907 5 C -0.142 4.142 6 N -0.517 5.517 7 Si 0.699 3.301 8 H -0.208 1.208 9 H -0.224 1.224 10 H -0.194 1.194 11 C 0.161 3.839 12 N -0.372 5.372 13 C -0.036 4.036 14 C -0.031 4.031 15 N -0.307 5.307 16 C 0.109 3.891 17 C -0.195 4.195 18 C -0.114 4.114 19 C -0.181 4.181 20 C -0.108 4.108 21 C -0.176 4.176 22 C 0.393 3.607 23 O -0.406 6.406 24 H 0.036 0.964 25 H 0.059 0.941 26 H 0.049 0.951 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.134 0.866 37 H 0.141 0.859 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -2.581 -12.380 -9.891 16.055 hybrid contribution 0.073 -0.665 0.526 0.851 sum -2.508 -13.045 -9.366 16.254 Atomic orbital electron populations 1.21165 0.84261 0.98668 0.98333 1.44794 1.01330 1.02926 1.82535 1.18606 1.07207 0.90176 1.25631 0.90709 1.25296 0.95971 0.95714 0.97176 1.69837 1.08684 1.34389 1.38800 0.87032 0.78047 0.81168 0.83857 1.20812 1.22439 1.19440 1.21686 0.97002 0.86492 0.78761 1.49728 1.19687 1.52443 1.15353 1.22282 0.95328 0.96102 0.89854 1.22389 0.85500 0.96611 0.98631 1.44949 1.20345 1.52213 1.13227 1.17551 0.88192 0.95488 0.87885 1.20610 1.01634 1.03512 0.93752 1.20780 0.94045 0.98359 0.98259 1.21007 0.99369 0.99876 0.97866 1.21066 0.98150 0.98470 0.93129 1.21868 0.93558 0.99382 1.02824 1.16175 0.84201 0.80268 0.80099 1.90902 1.37484 1.39675 1.72579 0.96403 0.94099 0.95092 0.92608 0.91717 0.89981 0.90501 0.90702 0.90100 0.90146 0.86320 0.86268 0.86572 0.85943 0.81948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.32 10.69 59.85 0.64 2.96 16 2 N -0.59 -14.25 2.72 -184.86 -0.50 -14.75 16 3 C -0.29 -8.33 9.95 -15.06 -0.15 -8.48 16 4 H 0.08 2.37 8.06 -52.48 -0.42 1.95 16 5 C 0.06 1.86 5.32 -17.43 -0.09 1.76 16 6 N -0.88 -28.01 13.97 55.49 0.78 -27.23 16 7 Si 0.87 22.71 24.97 -169.99 -4.25 18.46 16 8 H -0.28 -7.38 6.68 56.52 0.38 -7.00 16 9 H -0.30 -7.78 7.11 56.52 0.40 -7.37 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 11 C 0.37 8.09 5.32 -63.76 -0.34 7.75 16 12 N -0.63 -12.61 3.20 -182.55 -0.58 -13.20 16 13 C 0.09 1.22 7.68 -3.16 -0.02 1.19 16 14 C 0.09 1.17 6.49 -3.16 -0.02 1.15 16 15 N -0.58 -10.54 3.16 -118.24 -0.37 -10.91 16 16 C 0.20 3.60 6.62 -83.69 -0.55 3.05 16 17 C -0.17 -2.41 9.49 -39.40 -0.37 -2.78 16 18 C -0.10 -1.20 10.04 -39.61 -0.40 -1.59 16 19 C -0.16 -2.13 10.04 -39.55 -0.40 -2.52 16 20 C -0.09 -1.39 10.04 -39.61 -0.40 -1.79 16 21 C -0.16 -2.97 9.29 -39.39 -0.37 -3.34 16 22 C 0.69 15.56 8.21 -88.40 -0.73 14.83 16 23 O -0.53 -14.55 14.24 5.29 0.08 -14.48 16 24 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.04 0.79 8.08 -51.93 -0.42 0.37 16 26 H 0.03 0.48 7.99 -51.93 -0.41 0.07 16 27 H 0.26 8.02 8.31 -40.82 -0.34 7.68 16 28 H 0.06 1.18 8.07 -51.93 -0.42 0.76 16 29 H 0.08 2.09 3.00 -51.93 -0.16 1.93 16 30 H 0.08 0.97 8.09 -51.93 -0.42 0.55 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.08 0.80 8.11 -51.93 -0.42 0.38 16 34 H 0.12 1.33 7.29 -52.48 -0.38 0.95 16 35 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 36 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 37 H 0.12 1.69 8.06 -52.48 -0.42 1.26 16 38 H 0.16 3.74 5.28 -52.49 -0.28 3.46 16 LS Contribution 313.22 15.07 4.72 4.72 Total: -1.00 -35.80 313.22 -8.36 -44.16 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -5.03 Total: 1.02 kcal Atomic # 6 Polarization: 15.39 SS G_CDS: -3.20 Total: 12.19 kcal Atomic # 7 Polarization: -65.40 SS G_CDS: -0.68 Total: -66.08 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: 0.08 Total: -14.48 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -4.25 Total: 18.46 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -35.80 -8.36 -44.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808149584.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.833 kcal (2) G-P(sol) polarization free energy of solvation -35.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds