Wall clock time and date at job start Mon Mar 30 2020 02:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36941 * 119.99773 * 2 1 4 4 H 1.08006 * 119.99785 * 321.85974 * 3 2 1 5 5 C 1.38804 * 120.00211 * 141.86523 * 3 2 1 6 6 N 1.31626 * 119.99920 * 159.01225 * 5 3 2 7 7 Si 1.86797 * 120.00002 * 339.00804 * 5 3 2 8 8 H 1.48501 * 109.46793 * 95.29732 * 7 5 3 9 9 H 1.48505 * 109.47143 * 215.29543 * 7 5 3 10 10 H 1.48495 * 109.47200 * 335.29689 * 7 5 3 11 11 C 1.46495 * 120.00347 * 179.97438 * 2 1 3 12 12 N 1.46499 * 109.47028 * 89.99909 * 11 2 1 13 13 C 1.47054 * 125.41398 * 270.21658 * 12 11 2 14 14 C 1.54106 * 103.86440 * 180.22855 * 13 12 11 15 15 N 1.47052 * 103.86045 * 359.77073 * 14 13 12 16 16 C 1.39948 * 125.40904 * 180.02562 * 15 14 13 17 17 C 1.38863 * 120.07071 * 354.14076 * 16 15 14 18 18 C 1.38108 * 119.93117 * 179.74768 * 17 16 15 19 19 C 1.38284 * 120.06838 * 0.53705 * 18 17 16 20 20 C 1.38277 * 120.14026 * 359.73510 * 19 18 17 21 21 C 1.38115 * 120.07159 * 359.97438 * 20 19 18 22 22 C 1.33949 * 125.40960 * 90.02246 * 12 11 2 23 23 O 1.21589 * 123.04172 * 0.02562 * 22 12 11 24 24 H 1.08997 * 109.46975 * 275.08148 * 1 2 3 25 25 H 1.08999 * 109.47227 * 35.08395 * 1 2 3 26 26 H 1.09001 * 109.46899 * 155.08674 * 1 2 3 27 27 H 0.97002 * 119.99399 * 179.97438 * 6 5 3 28 28 H 1.08999 * 109.47300 * 330.00286 * 11 2 1 29 29 H 1.08997 * 109.47548 * 210.00334 * 11 2 1 30 30 H 1.09000 * 110.74495 * 61.53915 * 13 12 11 31 31 H 1.09001 * 110.47528 * 298.78644 * 13 12 11 32 32 H 1.08998 * 110.54696 * 241.17242 * 14 13 12 33 33 H 1.09000 * 110.66799 * 118.42040 * 14 13 12 34 34 H 1.08003 * 120.03308 * 0.03097 * 17 16 15 35 35 H 1.08006 * 119.96803 * 180.29563 * 18 17 16 36 36 H 1.07996 * 119.92932 * 179.72220 * 19 18 17 37 37 H 1.08004 * 119.96766 * 180.02562 * 20 19 18 38 38 H 1.08000 * 120.03954 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 1.7826 2.0214 -0.5777 5 6 3.3155 1.3144 0.7423 6 7 4.1850 2.2567 0.4445 7 14 3.6506 0.1499 2.1639 8 1 4.5013 -0.9729 1.6941 9 1 4.3522 0.8822 3.2488 10 1 2.3648 -0.3852 2.6791 11 6 2.1976 -1.2686 0.0006 12 7 2.4418 -1.6921 -1.3805 13 6 1.5438 -2.5341 -2.1850 14 6 2.2767 -2.6720 -3.5336 15 7 3.5071 -1.8885 -3.3476 16 6 4.5085 -1.7111 -4.3090 17 6 4.4448 -2.3969 -5.5148 18 6 5.4319 -2.2157 -6.4636 19 6 6.4888 -1.3610 -6.2093 20 6 6.5581 -0.6809 -5.0073 21 6 5.5710 -0.8532 -4.0568 22 6 3.5167 -1.3709 -2.1122 23 8 4.4221 -0.6771 -1.6912 24 1 -0.3633 0.0910 1.0236 25 1 -0.3633 0.8409 -0.5907 26 1 -0.3633 -0.9321 -0.4329 27 1 4.9995 2.3466 0.9635 28 1 1.6086 -2.0281 0.5147 29 1 3.1500 -1.1381 0.5144 30 1 0.5782 -2.0473 -2.3223 31 1 1.4159 -3.5104 -1.7175 32 1 1.6749 -2.2538 -4.3405 33 1 2.5150 -3.7160 -3.7369 34 1 3.6218 -3.0678 -5.7123 35 1 5.3804 -2.7452 -7.4035 36 1 7.2618 -1.2244 -6.9510 37 1 7.3846 -0.0137 -4.8119 38 1 5.6258 -0.3221 -3.1180 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000808149584.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:37 Heat of formation + Delta-G solvation = 40.424538 kcal Electronic energy + Delta-G solvation = -21860.053204 eV Core-core repulsion = 18703.792032 eV Total energy + Delta-G solvation = -3156.261172 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.33414 -39.74754 -37.78958 -37.40172 -35.09793 -33.64234 -31.80305 -31.18497 -29.54700 -28.25136 -27.42049 -24.60906 -24.07422 -23.06853 -22.33331 -20.99810 -19.16912 -18.56688 -17.89209 -17.52369 -17.29479 -16.67845 -15.96168 -15.88849 -15.53781 -15.06242 -14.90672 -14.78801 -14.69377 -14.40670 -14.22745 -14.03587 -13.78051 -13.25884 -13.10919 -13.01936 -12.69558 -12.59092 -12.40851 -12.09239 -12.04144 -11.69163 -11.15507 -10.77306 -10.69464 -9.87019 -9.76614 -9.00415 -8.72755 -8.22354 -5.66868 0.44251 0.49822 1.24835 1.30428 1.39070 1.44431 2.19388 2.39007 2.82556 2.97347 3.11192 3.43199 3.53485 3.74035 4.06967 4.12368 4.14332 4.34072 4.40363 4.48803 4.52938 4.56957 4.62046 4.69629 4.73150 4.93942 4.98646 5.04211 5.10991 5.20977 5.51943 5.63502 5.68864 5.77474 5.83703 5.96599 6.11426 6.23317 6.69871 6.90346 7.55022 7.61005 7.90924 8.97188 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.021525 B = 0.006486 C = 0.005454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.478089 B = 4315.934723 C = 5132.765330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.610 5.610 3 C -0.272 4.272 4 H 0.025 0.975 5 C 0.000 4.000 6 N -0.938 5.938 7 Si 0.940 3.060 8 H -0.291 1.291 9 H -0.304 1.304 10 H -0.233 1.233 11 C 0.367 3.633 12 N -0.636 5.636 13 C 0.086 3.914 14 C 0.089 3.911 15 N -0.582 5.582 16 C 0.175 3.825 17 C -0.159 4.159 18 C -0.084 4.084 19 C -0.153 4.153 20 C -0.102 4.102 21 C -0.201 4.201 22 C 0.673 3.327 23 O -0.602 6.602 24 H 0.029 0.971 25 H 0.028 0.972 26 H 0.076 0.924 27 H 0.258 0.742 28 H 0.118 0.882 29 H 0.042 0.958 30 H 0.093 0.907 31 H 0.117 0.883 32 H 0.103 0.897 33 H 0.120 0.880 34 H 0.157 0.843 35 H 0.167 0.833 36 H 0.151 0.849 37 H 0.125 0.875 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.502 -17.496 -12.726 22.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.335 5.335 3 C -0.402 4.402 4 H 0.043 0.957 5 C -0.198 4.198 6 N -0.580 5.580 7 Si 0.768 3.232 8 H -0.220 1.220 9 H -0.232 1.232 10 H -0.156 1.156 11 C 0.160 3.840 12 N -0.378 5.378 13 C -0.036 4.036 14 C -0.032 4.032 15 N -0.309 5.309 16 C 0.080 3.920 17 C -0.180 4.180 18 C -0.102 4.102 19 C -0.172 4.172 20 C -0.121 4.121 21 C -0.222 4.222 22 C 0.374 3.626 23 O -0.480 6.480 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.095 0.905 27 H 0.067 0.933 28 H 0.136 0.864 29 H 0.060 0.940 30 H 0.111 0.889 31 H 0.135 0.865 32 H 0.121 0.879 33 H 0.138 0.862 34 H 0.174 0.826 35 H 0.184 0.816 36 H 0.169 0.831 37 H 0.143 0.857 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.020 -16.989 -12.255 21.541 hybrid contribution 0.783 0.684 0.986 1.433 sum -4.237 -16.305 -11.270 20.269 Atomic orbital electron populations 1.21289 0.81118 1.00610 0.99236 1.44881 1.03193 1.01770 1.83675 1.18383 1.07066 0.91163 1.23590 0.95683 1.26005 0.95967 0.97800 1.00005 1.70008 1.09601 1.37822 1.40595 0.85909 0.79007 0.78435 0.79803 1.21985 1.23189 1.15560 1.21506 0.95844 0.86980 0.79682 1.49256 1.20354 1.52946 1.15254 1.22731 0.94510 0.96895 0.89473 1.22848 0.83290 0.98202 0.98876 1.44927 1.22040 1.52220 1.11715 1.17855 0.88022 0.96651 0.89455 1.21012 1.02791 1.02468 0.91714 1.21372 0.92432 0.97077 0.99362 1.21418 1.00418 0.98495 0.96827 1.21200 0.97585 0.99390 0.93930 1.21617 0.96779 1.01730 1.02072 1.16635 0.84113 0.80088 0.81739 1.90882 1.40059 1.42628 1.74400 0.95260 0.95308 0.90536 0.93289 0.86445 0.94027 0.88926 0.86545 0.87906 0.86170 0.82564 0.81571 0.83093 0.85721 0.87523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.34 10.69 127.77 1.37 5.71 16 2 N -0.61 -29.03 2.72 -738.78 -2.01 -31.03 16 3 C -0.27 -16.53 9.95 84.03 0.84 -15.70 16 4 H 0.03 1.73 8.06 -2.91 -0.02 1.71 16 5 C 0.00 0.03 5.32 84.86 0.45 0.48 16 6 N -0.94 -64.67 13.97 21.65 0.30 -64.37 16 7 Si 0.94 49.35 24.97 68.60 1.71 51.07 16 8 H -0.29 -15.65 6.68 99.48 0.66 -14.98 16 9 H -0.30 -15.96 7.11 99.48 0.71 -15.26 16 10 H -0.23 -10.65 7.11 99.48 0.71 -9.94 16 11 C 0.37 15.60 5.32 170.96 0.91 16.51 16 12 N -0.64 -24.68 3.20 -850.18 -2.72 -27.40 16 13 C 0.09 1.96 7.68 86.65 0.67 2.63 16 14 C 0.09 1.88 6.49 86.65 0.56 2.44 16 15 N -0.58 -20.76 3.16 -646.73 -2.04 -22.80 16 16 C 0.18 6.13 6.62 38.15 0.25 6.39 16 17 C -0.16 -3.79 9.49 22.39 0.21 -3.58 16 18 C -0.08 -1.70 10.04 22.25 0.22 -1.48 16 19 C -0.15 -3.59 10.04 22.29 0.22 -3.37 16 20 C -0.10 -3.30 10.04 22.25 0.22 -3.08 16 21 C -0.20 -8.28 9.29 22.39 0.21 -8.07 16 22 C 0.67 31.24 8.21 179.57 1.47 32.72 16 23 O -0.60 -35.76 14.24 -4.00 -0.06 -35.82 16 24 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.03 1.08 8.08 -2.39 -0.02 1.06 16 26 H 0.08 2.03 7.99 -2.39 -0.02 2.01 16 27 H 0.26 17.06 8.31 -92.71 -0.77 16.29 16 28 H 0.12 3.74 8.07 -2.39 -0.02 3.72 16 29 H 0.04 2.13 3.00 -2.39 -0.01 2.13 16 30 H 0.09 1.85 8.09 -2.39 -0.02 1.83 16 31 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.12 1.63 8.11 -2.39 -0.02 1.61 16 34 H 0.16 2.51 7.29 -2.91 -0.02 2.49 16 35 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 36 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 37 H 0.12 3.73 8.06 -2.91 -0.02 3.70 16 38 H 0.11 5.63 5.28 -2.91 -0.02 5.62 16 Total: -1.00 -91.80 313.22 3.82 -87.98 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: 1.02 Total: 10.76 kcal Atomic # 6 Polarization: 24.00 SS G_CDS: 7.61 Total: 31.61 kcal Atomic # 7 Polarization: -139.14 SS G_CDS: -6.46 Total: -145.60 kcal Atomic # 8 Polarization: -35.76 SS G_CDS: -0.06 Total: -35.82 kcal Atomic # 14 Polarization: 49.35 SS G_CDS: 1.71 Total: 51.07 kcal Total: -91.80 3.82 -87.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808149584.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.406 kcal (2) G-P(sol) polarization free energy of solvation -91.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds