Wall clock time and date at job start Mon Mar 30 2020 02:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 N 1.36596 * 110.99925 * 2 1 4 4 C 1.34776 * 119.99964 * 116.05116 * 3 2 1 5 5 O 1.21584 * 119.99978 * 179.97438 * 4 3 2 6 6 N 1.34779 * 120.00123 * 359.97438 * 4 3 2 7 7 C 1.39951 * 120.00337 * 184.53299 * 6 4 3 8 8 C 1.39288 * 119.94730 * 144.35595 * 7 6 4 9 9 C 1.38496 * 120.42893 * 179.97438 * 8 7 6 10 10 C 1.37684 * 120.31673 * 0.02562 * 9 8 7 11 11 C 1.40741 * 119.88690 * 359.97438 * 10 9 8 12 12 C 1.41412 * 120.20987 * 179.97438 * 11 10 9 13 13 H 1.07991 * 119.99714 * 155.38498 * 12 11 10 14 14 C 1.39933 * 119.99614 * 335.38150 * 12 11 10 15 15 N 1.30826 * 120.00577 * 344.58866 * 14 12 11 16 16 Si 1.86805 * 119.99718 * 164.59258 * 14 12 11 17 17 H 1.48500 * 109.47211 * 94.96569 * 16 14 12 18 18 H 1.48500 * 109.47024 * 214.96990 * 16 14 12 19 19 H 1.48497 * 109.46994 * 334.96743 * 16 14 12 20 20 C 1.38235 * 119.94739 * 324.08684 * 7 6 4 21 21 C 1.46897 * 110.99632 * 236.04414 * 2 1 3 22 22 C 1.52999 * 117.49816 * 137.57817 * 21 2 1 23 23 C 1.53000 * 60.00070 * 252.51073 * 22 21 2 24 24 H 1.08999 * 109.46953 * 59.99666 * 1 2 3 25 25 H 1.08996 * 109.47269 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47032 * 300.00143 * 1 2 3 27 27 H 0.96992 * 120.00164 * 296.03985 * 3 2 1 28 28 H 0.97002 * 119.99885 * 4.53136 * 6 4 3 29 29 H 1.07997 * 119.78529 * 0.02562 * 8 7 6 30 30 H 1.07996 * 119.83819 * 180.02562 * 9 8 7 31 31 H 1.08007 * 120.05472 * 179.97438 * 10 9 8 32 32 H 0.97001 * 120.00469 * 180.02562 * 15 14 12 33 33 H 1.08001 * 120.15709 * 0.02562 * 20 7 6 34 34 H 1.09002 * 115.54932 * 283.28343 * 21 2 1 35 35 H 1.09003 * 117.49515 * 0.02562 * 22 21 2 36 36 H 1.08997 * 117.49695 * 145.01924 * 22 21 2 37 37 H 1.09006 * 117.49413 * 252.50967 * 23 22 21 38 38 H 1.08997 * 117.52119 * 107.47945 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 7 1.9586 1.2752 0.0000 4 6 2.6786 1.7207 1.0486 5 8 3.1147 2.8556 1.0484 6 7 2.9152 0.9080 2.0975 7 6 3.5806 1.3986 3.2267 8 6 3.2241 0.9464 4.4950 9 6 3.8763 1.4247 5.6193 10 6 4.8848 2.3538 5.4951 11 6 5.2558 2.8200 4.2200 12 6 6.2903 3.7746 4.0845 13 1 6.8439 3.8433 3.1598 14 6 6.5965 4.6301 5.1487 15 7 5.7562 4.7649 6.1424 16 14 8.2051 5.5798 5.1505 17 1 7.9799 6.9358 4.5886 18 1 8.7086 5.6981 6.5425 19 1 9.2055 4.8605 4.3217 20 6 4.5944 2.3270 3.0813 21 6 1.9954 -0.7660 -1.1376 22 6 3.1838 -0.1745 -1.8982 23 6 1.7936 -0.1813 -2.5370 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.7881 1.8602 -0.7547 28 1 2.6243 -0.0169 2.0697 29 1 2.4346 0.2174 4.6023 30 1 3.5925 1.0672 6.5980 31 1 5.3903 2.7243 6.3747 32 1 5.9683 5.3582 6.8799 33 1 4.8742 2.6753 2.0980 34 1 1.9529 -1.8503 -1.0342 35 1 3.5754 0.7828 -1.5542 36 1 3.9235 -0.8696 -2.2953 37 1 1.6187 -0.8809 -3.3544 38 1 1.2698 0.7715 -2.6135 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824369175.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:26 Heat of formation + Delta-G solvation = 63.043323 kcal Electronic energy + Delta-G solvation = -20896.410825 eV Core-core repulsion = 17741.130477 eV Total energy + Delta-G solvation = -3155.280348 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.43855 -38.69029 -37.01063 -34.79488 -34.26421 -32.80014 -31.01338 -29.70050 -27.73856 -25.65778 -25.18335 -22.59454 -22.35166 -21.33631 -20.74196 -19.53131 -18.11011 -17.42166 -17.17368 -16.41136 -15.34871 -15.09944 -14.74721 -14.45721 -14.37776 -13.92500 -13.60503 -13.17960 -12.89937 -12.80186 -12.28447 -12.06892 -11.82193 -11.57956 -11.23339 -11.15868 -11.01010 -10.64729 -10.59669 -10.40616 -10.12421 -9.64428 -9.48229 -9.24427 -9.08332 -8.98574 -8.72174 -7.32536 -6.75155 -6.60128 -4.23011 2.68301 2.85697 3.04955 3.15105 3.20475 3.29985 3.42274 3.70555 3.85448 4.04524 4.37521 4.57031 4.64918 4.75953 5.02189 5.12430 5.30635 5.37963 5.51250 5.62494 5.70871 5.84540 5.87630 6.36959 6.44152 6.53408 6.91079 7.00429 7.11366 7.16013 7.23724 7.36812 7.51014 7.82388 7.98959 8.12774 8.21949 8.37462 8.65027 8.78391 9.01581 9.08891 9.18966 10.32686 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.028075 B = 0.004177 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.078853 B = 6701.080612 C = 7318.496453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 N -0.277 5.277 3 N -0.596 5.596 4 C 0.722 3.278 5 O -0.565 6.565 6 N -0.663 5.663 7 C 0.164 3.836 8 C -0.261 4.261 9 C -0.093 4.093 10 C -0.175 4.175 11 C 0.117 3.883 12 C -0.456 4.456 13 H 0.076 0.924 14 C 0.075 3.925 15 N -0.797 5.797 16 Si 0.908 3.092 17 H -0.271 1.271 18 H -0.276 1.276 19 H -0.261 1.261 20 C -0.211 4.211 21 C -0.002 4.002 22 C -0.168 4.168 23 C -0.215 4.215 24 H 0.037 0.963 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.392 0.608 28 H 0.405 0.595 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.121 0.879 32 H 0.278 0.722 33 H 0.111 0.889 34 H 0.138 0.862 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.024 -10.511 -11.593 17.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 N -0.095 5.095 3 N -0.351 5.351 4 C 0.423 3.577 5 O -0.438 6.438 6 N -0.310 5.310 7 C 0.072 3.928 8 C -0.282 4.282 9 C -0.112 4.112 10 C -0.195 4.195 11 C 0.114 3.886 12 C -0.486 4.486 13 H 0.094 0.906 14 C -0.142 4.142 15 N -0.423 5.423 16 Si 0.732 3.268 17 H -0.197 1.197 18 H -0.201 1.201 19 H -0.185 1.185 20 C -0.232 4.232 21 C -0.111 4.111 22 C -0.205 4.205 23 C -0.254 4.254 24 H 0.056 0.944 25 H 0.103 0.897 26 H 0.097 0.903 27 H 0.233 0.767 28 H 0.240 0.760 29 H 0.106 0.894 30 H 0.108 0.892 31 H 0.139 0.861 32 H 0.089 0.911 33 H 0.129 0.871 34 H 0.155 0.845 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.541 -9.807 -10.765 16.399 hybrid contribution -0.112 0.515 -1.150 1.265 sum -7.653 -9.292 -11.915 16.938 Atomic orbital electron populations 1.22880 0.86004 1.03181 1.01928 1.62709 1.07971 0.99485 1.39347 1.45018 1.58803 1.08974 1.22266 1.15653 0.78348 0.84057 0.79636 1.91047 1.55209 1.18343 1.79200 1.42439 1.59724 1.13679 1.15172 1.17294 0.93322 0.98209 0.83982 1.20032 1.07042 1.10023 0.91140 1.20451 0.97292 0.97863 0.95636 1.21388 1.00420 0.99117 0.98528 1.17514 0.90411 0.90016 0.90642 1.19558 1.15113 1.14440 0.99508 0.90572 1.25884 0.97407 0.96337 0.94566 1.69832 1.33449 1.30734 1.08288 0.86313 0.82242 0.79876 0.78333 1.19673 1.20144 1.18499 1.21093 0.98703 1.04436 0.99008 1.23448 1.03031 0.98320 0.86286 1.23187 0.91345 1.03926 1.02071 1.23393 1.00937 1.03374 0.97687 0.94419 0.89730 0.90290 0.76667 0.75961 0.89384 0.89165 0.86149 0.91101 0.87120 0.84469 0.87764 0.87981 0.88228 0.89164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.85 60.07 0.59 0.66 16 2 N -0.28 -3.00 4.15 -114.01 -0.47 -3.47 16 3 N -0.60 -8.21 3.22 27.63 0.09 -8.12 16 4 C 0.72 13.90 8.50 -86.92 -0.74 13.16 16 5 O -0.57 -13.59 14.66 5.29 0.08 -13.51 16 6 N -0.66 -12.82 5.29 -14.27 -0.08 -12.89 16 7 C 0.16 3.90 6.28 -83.76 -0.53 3.38 16 8 C -0.26 -5.97 9.97 -39.10 -0.39 -6.36 16 9 C -0.09 -2.25 10.02 -39.69 -0.40 -2.65 16 10 C -0.17 -4.72 8.69 -38.84 -0.34 -5.05 16 11 C 0.12 3.32 5.58 -106.85 -0.60 2.73 16 12 C -0.46 -12.89 9.06 -37.74 -0.34 -13.23 16 13 H 0.08 2.10 7.89 -52.49 -0.41 1.68 16 14 C 0.07 1.97 5.19 -17.35 -0.09 1.88 16 15 N -0.80 -21.52 10.82 55.55 0.60 -20.92 16 16 Si 0.91 19.58 29.59 -169.99 -5.03 14.55 16 17 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 18 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 19 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 20 C -0.21 -5.68 8.43 -38.69 -0.33 -6.00 16 21 C 0.00 -0.02 6.23 -67.71 -0.42 -0.44 16 22 C -0.17 -1.63 9.79 -26.73 -0.26 -1.89 16 23 C -0.21 -1.68 9.62 -26.73 -0.26 -1.94 16 24 H 0.04 0.29 7.88 -51.93 -0.41 -0.12 16 25 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.39 4.95 7.87 -185.17 -1.46 3.49 16 28 H 0.40 6.62 7.88 -40.82 -0.32 6.30 16 29 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 30 H 0.09 1.92 8.06 -52.49 -0.42 1.49 16 31 H 0.12 3.33 6.07 -52.48 -0.32 3.01 16 32 H 0.28 6.81 8.30 -40.82 -0.34 6.47 16 33 H 0.11 3.09 6.27 -52.49 -0.33 2.76 16 34 H 0.14 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.10 1.27 7.00 -51.93 -0.36 0.91 16 36 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.09 0.73 7.58 -51.93 -0.39 0.34 16 LS Contribution 319.82 15.07 4.82 4.82 Total: -1.00 -31.66 319.82 -10.19 -41.85 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: -6.10 Total: 13.44 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: -4.09 Total: -15.76 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: 0.14 Total: -45.40 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: 0.08 Total: -13.51 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.03 Total: 14.55 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.66 -10.19 -41.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824369175.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.893 kcal (2) G-P(sol) polarization free energy of solvation -31.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds