Wall clock time and date at job start Mon Mar 30 2020 01:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 115.54643 * 2 1 4 4 C 1.53000 * 117.50101 * 145.66871 * 2 1 3 5 5 C 1.52997 * 117.50104 * 214.33192 * 2 1 3 6 6 H 1.09001 * 117.50001 * 359.97438 * 5 2 1 7 7 C 1.52997 * 117.50064 * 144.99870 * 5 2 1 8 8 N 1.46503 * 109.47218 * 185.00187 * 7 5 2 9 9 C 1.34775 * 119.99963 * 180.02562 * 8 7 5 10 10 O 1.21582 * 120.00242 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99715 * 179.97438 * 9 8 7 12 12 C 1.39464 * 119.99718 * 175.11669 * 11 9 8 13 13 C 1.38645 * 119.64641 * 185.02278 * 12 11 9 14 14 C 1.40827 * 118.67001 * 179.72458 * 13 12 11 15 15 C 1.41541 * 120.99422 * 180.27975 * 14 13 12 16 16 H 1.08002 * 120.00084 * 203.99933 * 15 14 13 17 17 C 1.40035 * 120.00410 * 23.99918 * 15 14 13 18 18 N 1.30743 * 119.99774 * 16.78820 * 17 15 14 19 19 Si 1.86794 * 120.00044 * 196.79254 * 17 15 14 20 20 H 1.48495 * 109.47641 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47384 * 120.00113 * 19 17 15 22 22 H 1.48501 * 109.46867 * 239.99756 * 19 17 15 23 23 C 1.41156 * 118.00490 * 0.53576 * 14 13 12 24 24 C 1.36588 * 119.13238 * 359.74471 * 23 14 13 25 25 N 1.32074 * 121.25707 * 359.97331 * 24 23 14 26 26 H 1.08996 * 109.47579 * 325.58270 * 1 2 3 27 27 H 1.09009 * 109.46849 * 85.58434 * 1 2 3 28 28 H 1.08999 * 109.46904 * 205.58296 * 1 2 3 29 29 H 1.09001 * 117.49745 * 215.00743 * 4 2 1 30 30 H 1.09000 * 117.49704 * 0.02562 * 4 2 1 31 31 H 1.09004 * 109.46967 * 304.99442 * 7 5 2 32 32 H 1.08996 * 109.47386 * 64.99674 * 7 5 2 33 33 H 0.96998 * 119.99960 * 359.97438 * 8 7 5 34 34 H 0.96991 * 120.00273 * 355.11984 * 11 9 8 35 35 H 1.08000 * 120.66464 * 359.97438 * 13 12 11 36 36 H 0.96999 * 120.00331 * 179.97438 * 18 17 15 37 37 H 1.08002 * 120.43247 * 179.76256 * 23 14 13 38 38 H 1.07995 * 119.37635 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0000 0.9835 0.0000 4 6 2.2365 -1.1207 0.7654 5 6 2.2365 -1.1207 -0.7654 6 1 1.6113 -1.8582 -1.2686 7 6 3.5487 -0.7752 -1.4721 8 7 4.0083 -1.9336 -2.2423 9 6 5.1523 -1.8608 -2.9510 10 8 5.8028 -0.8336 -2.9516 11 7 5.5753 -2.9267 -3.6592 12 6 6.7029 -2.8203 -4.4729 13 6 7.0710 -3.8875 -5.2778 14 6 8.2097 -3.7556 -6.0957 15 6 8.6264 -4.8118 -6.9408 16 1 9.6575 -4.8768 -7.2557 17 6 7.7019 -5.7726 -7.3687 18 7 6.4199 -5.5336 -7.2747 19 14 8.3001 -7.3956 -8.0738 20 1 9.7849 -7.4188 -8.0723 21 1 7.7864 -8.5151 -7.2443 22 1 7.8046 -7.5432 -9.4659 23 6 8.9263 -2.5406 -6.0434 24 6 8.4902 -1.5466 -5.2142 25 7 7.4140 -1.7025 -4.4645 26 1 -0.3634 0.8477 0.5808 27 1 -0.3633 0.0791 -1.0247 28 1 -0.3633 -0.9269 0.4438 29 1 3.1713 -0.8745 1.2689 30 1 1.6113 -1.8582 1.2686 31 1 3.3883 0.0676 -2.1445 32 1 4.3020 -0.5100 -0.7304 33 1 3.4895 -2.7533 -2.2415 34 1 5.0955 -3.7678 -3.6028 35 1 6.4936 -4.8002 -5.2804 36 1 5.7794 -6.1989 -7.5714 37 1 9.8076 -2.3986 -6.6512 38 1 9.0351 -0.6153 -5.1714 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871719870.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:13 Heat of formation + Delta-G solvation = 27.328024 kcal Electronic energy + Delta-G solvation = -20098.348228 eV Core-core repulsion = 16941.519148 eV Total energy + Delta-G solvation = -3156.829080 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.79260 -38.46949 -37.70593 -34.42432 -33.84804 -33.67741 -30.50706 -29.47008 -28.40522 -26.16834 -25.89567 -22.04365 -21.77226 -21.20654 -20.80762 -19.87555 -17.95581 -17.61932 -16.32843 -15.46111 -15.23745 -15.05571 -14.71959 -14.20693 -14.10987 -14.02699 -13.44120 -13.39591 -13.14519 -12.82149 -12.58536 -12.45986 -12.18654 -11.65344 -11.48554 -11.45012 -11.19962 -10.88111 -10.31775 -10.24937 -10.15062 -10.11031 -9.71713 -9.51768 -9.33193 -8.72195 -7.96281 -7.67974 -6.98976 -6.79242 -4.59293 2.72606 2.80730 3.02006 3.02537 3.07726 3.26525 3.52745 3.85453 3.92192 4.37183 4.57359 4.59924 4.70431 4.78806 5.02330 5.12517 5.37315 5.50192 5.56251 5.67307 5.72528 5.74816 5.80877 5.94943 6.00865 6.09824 6.57863 6.64952 6.77261 6.83825 6.96608 7.12905 7.33192 7.46733 7.51786 7.87718 8.13942 8.43508 8.48761 8.75057 8.77434 9.22742 9.77247 10.07462 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.028276 B = 0.003343 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.002588 B = 8373.487147 C = 9154.933416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.147 4.147 3 H 0.107 0.893 4 C -0.173 4.173 5 C -0.163 4.163 6 H 0.109 0.891 7 C 0.173 3.827 8 N -0.752 5.752 9 C 0.691 3.309 10 O -0.534 6.534 11 N -0.668 5.668 12 C 0.356 3.644 13 C -0.248 4.248 14 C 0.145 3.855 15 C -0.455 4.455 16 H 0.083 0.917 17 C 0.078 3.922 18 N -0.787 5.787 19 Si 0.911 3.089 20 H -0.259 1.259 21 H -0.271 1.271 22 H -0.274 1.274 23 C -0.285 4.285 24 C 0.120 3.880 25 N -0.554 5.554 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.391 0.609 34 H 0.403 0.597 35 H 0.127 0.873 36 H 0.281 0.719 37 H 0.101 0.899 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.788 1.960 10.471 15.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.166 4.166 3 H 0.125 0.875 4 C -0.210 4.210 5 C -0.182 4.182 6 H 0.127 0.873 7 C 0.049 3.951 8 N -0.411 5.411 9 C 0.390 3.610 10 O -0.405 6.405 11 N -0.316 5.316 12 C 0.130 3.870 13 C -0.274 4.274 14 C 0.136 3.864 15 C -0.486 4.486 16 H 0.101 0.899 17 C -0.141 4.141 18 N -0.413 5.413 19 Si 0.735 3.265 20 H -0.183 1.183 21 H -0.196 1.196 22 H -0.199 1.199 23 C -0.309 4.309 24 C -0.033 4.033 25 N -0.273 5.273 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.115 0.885 30 H 0.112 0.888 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.224 0.776 34 H 0.238 0.762 35 H 0.145 0.855 36 H 0.092 0.908 37 H 0.119 0.881 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.710 3.582 10.998 15.764 hybrid contribution -0.134 -2.339 -0.947 2.527 sum -10.844 1.243 10.050 14.838 Atomic orbital electron populations 1.21370 0.92702 1.01909 1.02005 1.22383 0.95293 0.94795 1.04080 0.87506 1.23270 1.02732 1.01286 0.93726 1.22596 0.98705 1.02703 0.94181 0.87276 1.20606 0.92523 0.87988 0.93998 1.45167 1.25548 1.16815 1.53564 1.16084 0.81130 0.84522 0.79253 1.91010 1.55555 1.29017 1.64939 1.42552 1.29409 1.13164 1.46474 1.17953 0.86773 0.91896 0.90341 1.21480 1.04568 0.99000 1.02372 1.17559 0.89378 0.90891 0.88563 1.19603 0.96719 1.06698 1.25589 0.89937 1.25962 0.94373 0.99745 0.94033 1.69798 1.02174 1.34082 1.35216 0.86223 0.80506 0.80969 0.78829 1.18279 1.19649 1.19919 1.21650 1.05605 0.95982 1.07701 1.21481 0.92230 0.97234 0.92385 1.67223 1.09274 1.23672 1.27178 0.92088 0.92068 0.92575 0.88527 0.88755 0.91467 0.91723 0.77554 0.76232 0.85550 0.90831 0.88055 0.86048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 10.19 37.16 0.38 -0.46 16 2 C -0.15 -1.20 6.12 -90.62 -0.55 -1.76 16 3 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 4 C -0.17 -1.42 9.83 -26.69 -0.26 -1.69 16 5 C -0.16 -1.51 5.57 -90.58 -0.50 -2.02 16 6 H 0.11 0.93 8.04 -51.93 -0.42 0.51 16 7 C 0.17 2.19 5.96 -4.04 -0.02 2.17 16 8 N -0.75 -10.74 5.56 -65.23 -0.36 -11.11 16 9 C 0.69 13.82 8.52 -86.92 -0.74 13.08 16 10 O -0.53 -13.10 14.60 5.29 0.08 -13.03 16 11 N -0.67 -13.58 5.40 -15.86 -0.09 -13.67 16 12 C 0.36 8.89 7.42 -154.67 -1.15 7.74 16 13 C -0.25 -6.38 8.63 -38.45 -0.33 -6.71 16 14 C 0.14 3.85 5.60 -106.55 -0.60 3.25 16 15 C -0.45 -11.76 9.12 -37.65 -0.34 -12.11 16 16 H 0.08 2.05 7.90 -52.49 -0.41 1.63 16 17 C 0.08 1.88 5.20 -17.34 -0.09 1.79 16 18 N -0.79 -19.43 10.93 55.55 0.61 -18.83 16 19 Si 0.91 17.91 29.59 -169.99 -5.03 12.88 16 20 H -0.26 -5.08 7.11 56.52 0.40 -4.67 16 21 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 22 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 23 C -0.29 -7.14 9.85 -39.07 -0.38 -7.52 16 24 C 0.12 2.98 11.10 -18.04 -0.20 2.77 16 25 N -0.55 -14.66 7.86 -12.75 -0.10 -14.76 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 28 H 0.06 0.36 7.90 -51.93 -0.41 -0.05 16 29 H 0.10 0.82 8.03 -51.93 -0.42 0.40 16 30 H 0.09 0.68 8.05 -51.93 -0.42 0.26 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 0.88 7.88 -51.93 -0.41 0.47 16 33 H 0.39 4.34 8.42 -40.82 -0.34 3.99 16 34 H 0.40 6.66 8.71 -40.82 -0.36 6.30 16 35 H 0.13 3.20 6.22 -52.49 -0.33 2.88 16 36 H 0.28 6.24 8.29 -40.82 -0.34 5.90 16 37 H 0.10 2.32 8.06 -52.49 -0.42 1.89 16 38 H 0.12 2.63 8.06 -52.49 -0.42 2.21 16 LS Contribution 326.49 15.07 4.92 4.92 Total: -1.00 -32.20 326.49 -9.96 -42.16 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -5.18 Total: 12.88 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -4.80 Total: -1.45 kcal Atomic # 7 Polarization: -58.42 SS G_CDS: 0.06 Total: -58.36 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.08 Total: -13.03 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.03 Total: 12.88 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.20 -9.96 -42.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871719870.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.485 kcal (2) G-P(sol) polarization free energy of solvation -32.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds