Wall clock time and date at job start Mon Mar 30 2020 01:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 115.54643 * 2 1 4 4 C 1.53000 * 117.50101 * 145.66871 * 2 1 3 5 5 C 1.52997 * 117.50104 * 214.33192 * 2 1 3 6 6 H 1.09001 * 117.50001 * 359.97438 * 5 2 1 7 7 C 1.52997 * 117.50064 * 144.99870 * 5 2 1 8 8 N 1.46503 * 109.47218 * 185.00187 * 7 5 2 9 9 C 1.34775 * 119.99963 * 180.02562 * 8 7 5 10 10 O 1.21582 * 120.00242 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99715 * 179.97438 * 9 8 7 12 12 C 1.39464 * 119.99718 * 175.11669 * 11 9 8 13 13 C 1.38645 * 119.64641 * 185.02278 * 12 11 9 14 14 C 1.40827 * 118.67001 * 179.72458 * 13 12 11 15 15 C 1.41541 * 120.99422 * 180.27975 * 14 13 12 16 16 H 1.08002 * 120.00084 * 203.99933 * 15 14 13 17 17 C 1.40035 * 120.00410 * 23.99918 * 15 14 13 18 18 N 1.30743 * 119.99774 * 16.78820 * 17 15 14 19 19 Si 1.86794 * 120.00044 * 196.79254 * 17 15 14 20 20 H 1.48495 * 109.47641 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47384 * 120.00113 * 19 17 15 22 22 H 1.48501 * 109.46867 * 239.99756 * 19 17 15 23 23 C 1.41156 * 118.00490 * 0.53576 * 14 13 12 24 24 C 1.36588 * 119.13238 * 359.74471 * 23 14 13 25 25 N 1.32074 * 121.25707 * 359.97331 * 24 23 14 26 26 H 1.08996 * 109.47579 * 325.58270 * 1 2 3 27 27 H 1.09009 * 109.46849 * 85.58434 * 1 2 3 28 28 H 1.08999 * 109.46904 * 205.58296 * 1 2 3 29 29 H 1.09001 * 117.49745 * 215.00743 * 4 2 1 30 30 H 1.09000 * 117.49704 * 0.02562 * 4 2 1 31 31 H 1.09004 * 109.46967 * 304.99442 * 7 5 2 32 32 H 1.08996 * 109.47386 * 64.99674 * 7 5 2 33 33 H 0.96998 * 119.99960 * 359.97438 * 8 7 5 34 34 H 0.96991 * 120.00273 * 355.11984 * 11 9 8 35 35 H 1.08000 * 120.66464 * 359.97438 * 13 12 11 36 36 H 0.96999 * 120.00331 * 179.97438 * 18 17 15 37 37 H 1.08002 * 120.43247 * 179.76256 * 23 14 13 38 38 H 1.07995 * 119.37635 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0000 0.9835 0.0000 4 6 2.2365 -1.1207 0.7654 5 6 2.2365 -1.1207 -0.7654 6 1 1.6113 -1.8582 -1.2686 7 6 3.5487 -0.7752 -1.4721 8 7 4.0083 -1.9336 -2.2423 9 6 5.1523 -1.8608 -2.9510 10 8 5.8028 -0.8336 -2.9516 11 7 5.5753 -2.9267 -3.6592 12 6 6.7029 -2.8203 -4.4729 13 6 7.0710 -3.8875 -5.2778 14 6 8.2097 -3.7556 -6.0957 15 6 8.6264 -4.8118 -6.9408 16 1 9.6575 -4.8768 -7.2557 17 6 7.7019 -5.7726 -7.3687 18 7 6.4199 -5.5336 -7.2747 19 14 8.3001 -7.3956 -8.0738 20 1 9.7849 -7.4188 -8.0723 21 1 7.7864 -8.5151 -7.2443 22 1 7.8046 -7.5432 -9.4659 23 6 8.9263 -2.5406 -6.0434 24 6 8.4902 -1.5466 -5.2142 25 7 7.4140 -1.7025 -4.4645 26 1 -0.3634 0.8477 0.5808 27 1 -0.3633 0.0791 -1.0247 28 1 -0.3633 -0.9269 0.4438 29 1 3.1713 -0.8745 1.2689 30 1 1.6113 -1.8582 1.2686 31 1 3.3883 0.0676 -2.1445 32 1 4.3020 -0.5100 -0.7304 33 1 3.4895 -2.7533 -2.2415 34 1 5.0955 -3.7678 -3.6028 35 1 6.4936 -4.8002 -5.2804 36 1 5.7794 -6.1989 -7.5714 37 1 9.8076 -2.3986 -6.6512 38 1 9.0351 -0.6153 -5.1714 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871719870.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:12 Heat of formation + Delta-G solvation = 7.534661 kcal Electronic energy + Delta-G solvation = -20099.206533 eV Core-core repulsion = 16941.519148 eV Total energy + Delta-G solvation = -3157.687385 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.41773 -39.92205 -38.88020 -36.17305 -35.49018 -35.24660 -32.43516 -30.77790 -29.62120 -27.92284 -27.13822 -23.85825 -23.43528 -22.12989 -21.89510 -21.21962 -19.54757 -19.32935 -17.89280 -17.07196 -16.67263 -16.45436 -16.07786 -16.03437 -15.55845 -15.20926 -14.87065 -14.69897 -14.45868 -14.28796 -13.96512 -13.84551 -13.18245 -13.05090 -12.91216 -12.65349 -12.33374 -12.23013 -12.06144 -11.89363 -11.53005 -11.36343 -11.14887 -11.00257 -10.78002 -10.04725 -9.91898 -9.60454 -8.84102 -8.63717 -6.55373 0.84578 1.00670 1.42370 1.55818 1.58331 1.61651 2.21089 2.26658 2.78013 2.83958 3.21092 3.67033 3.77674 3.91081 4.00707 4.16106 4.25796 4.46523 4.58452 4.72478 4.75820 4.85696 4.92398 4.94507 4.96413 4.98592 5.10109 5.20550 5.23041 5.24008 5.44495 5.50510 5.53729 5.65960 5.84850 5.97756 6.27937 6.56764 6.80633 6.82995 7.00189 7.61620 7.91015 8.27039 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.028276 B = 0.003343 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.002588 B = 8373.487147 C = 9154.933416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.144 4.144 3 H 0.103 0.897 4 C -0.167 4.167 5 C -0.167 4.167 6 H 0.123 0.877 7 C 0.174 3.826 8 N -0.728 5.728 9 C 0.687 3.313 10 O -0.582 6.582 11 N -0.660 5.660 12 C 0.353 3.647 13 C -0.263 4.263 14 C 0.115 3.885 15 C -0.483 4.483 16 H 0.084 0.916 17 C 0.040 3.960 18 N -0.810 5.810 19 Si 0.988 3.012 20 H -0.259 1.259 21 H -0.261 1.261 22 H -0.266 1.266 23 C -0.299 4.299 24 C 0.114 3.886 25 N -0.582 5.582 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.092 0.908 30 H 0.110 0.890 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.411 0.589 34 H 0.420 0.580 35 H 0.125 0.875 36 H 0.293 0.707 37 H 0.116 0.884 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.060 0.554 10.816 16.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.163 4.163 3 H 0.121 0.879 4 C -0.204 4.204 5 C -0.186 4.186 6 H 0.141 0.859 7 C 0.050 3.950 8 N -0.386 5.386 9 C 0.387 3.613 10 O -0.457 6.457 11 N -0.310 5.310 12 C 0.125 3.875 13 C -0.289 4.289 14 C 0.107 3.893 15 C -0.513 4.513 16 H 0.102 0.898 17 C -0.178 4.178 18 N -0.435 5.435 19 Si 0.808 3.192 20 H -0.182 1.182 21 H -0.186 1.186 22 H -0.191 1.191 23 C -0.323 4.323 24 C -0.039 4.039 25 N -0.303 5.303 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.110 0.890 30 H 0.128 0.872 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.247 0.753 34 H 0.257 0.743 35 H 0.143 0.857 36 H 0.104 0.896 37 H 0.134 0.866 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -12.052 2.156 11.378 16.714 hybrid contribution 0.204 -1.859 -1.037 2.138 sum -11.848 0.297 10.341 15.729 Atomic orbital electron populations 1.21383 0.91407 1.02773 1.02264 1.22487 0.96265 0.94442 1.03103 0.87884 1.23337 1.02812 1.01498 0.92704 1.22470 0.97201 1.04083 0.94800 0.85919 1.20681 0.94044 0.86943 0.93357 1.44972 1.23595 1.18189 1.51855 1.16287 0.82049 0.83623 0.79341 1.90972 1.57411 1.30684 1.66660 1.42425 1.28454 1.14270 1.45807 1.18170 0.87524 0.91325 0.90442 1.21457 1.05005 0.99283 1.03199 1.18002 0.90207 0.91848 0.89283 1.19888 0.97330 1.07751 1.26327 0.89766 1.26837 0.94227 1.02807 0.93912 1.69820 1.03295 1.35523 1.34888 0.85066 0.79814 0.76022 0.78263 1.18206 1.18553 1.19075 1.21837 1.06256 0.95816 1.08342 1.21918 0.92026 0.98171 0.91792 1.67341 1.10220 1.24481 1.28212 0.91248 0.92110 0.91738 0.88971 0.87158 0.92894 0.92796 0.75303 0.74264 0.85731 0.89641 0.86611 0.83555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.38 10.19 71.98 0.73 -0.65 16 2 C -0.14 -2.11 6.12 -10.79 -0.07 -2.18 16 3 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 4 C -0.17 -2.39 9.83 30.62 0.30 -2.09 16 5 C -0.17 -2.80 5.57 -10.77 -0.06 -2.86 16 6 H 0.12 1.76 8.04 -2.39 -0.02 1.74 16 7 C 0.17 4.31 5.96 86.38 0.51 4.82 16 8 N -0.73 -20.16 5.56 -478.54 -2.66 -22.82 16 9 C 0.69 27.58 8.52 179.05 1.53 29.11 16 10 O -0.58 -29.13 14.60 -3.97 -0.06 -29.18 16 11 N -0.66 -26.90 5.40 -322.36 -1.74 -28.64 16 12 C 0.35 17.88 7.42 132.76 0.98 18.86 16 13 C -0.26 -13.78 8.63 23.00 0.20 -13.59 16 14 C 0.11 6.23 5.60 -21.12 -0.12 6.11 16 15 C -0.48 -25.10 9.12 23.52 0.21 -24.89 16 16 H 0.08 4.20 7.90 -2.91 -0.02 4.18 16 17 C 0.04 1.89 5.20 85.29 0.44 2.33 16 18 N -0.81 -39.60 10.93 21.84 0.24 -39.37 16 19 Si 0.99 35.73 29.59 68.60 2.03 37.76 16 20 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 21 H -0.26 -8.97 7.11 99.48 0.71 -8.26 16 22 H -0.27 -9.25 7.11 99.48 0.71 -8.54 16 23 C -0.30 -15.17 9.85 22.60 0.22 -14.95 16 24 C 0.11 5.71 11.10 84.27 0.94 6.64 16 25 N -0.58 -31.35 7.86 -194.27 -1.53 -32.88 16 26 H 0.07 0.68 8.14 -2.39 -0.02 0.67 16 27 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 28 H 0.06 0.64 7.90 -2.39 -0.02 0.62 16 29 H 0.09 1.42 8.03 -2.39 -0.02 1.41 16 30 H 0.11 1.26 8.05 -2.39 -0.02 1.24 16 31 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.05 1.47 7.88 -2.39 -0.02 1.45 16 33 H 0.41 8.34 8.42 -92.71 -0.78 7.56 16 34 H 0.42 13.66 8.71 -92.71 -0.81 12.85 16 35 H 0.12 6.41 6.22 -2.91 -0.02 6.39 16 36 H 0.29 12.68 8.29 -92.71 -0.77 11.91 16 37 H 0.12 5.35 8.06 -2.91 -0.02 5.33 16 38 H 0.15 6.35 8.06 -2.91 -0.02 6.33 16 Total: -1.00 -70.05 326.49 1.62 -68.43 By element: Atomic # 1 Polarization: 40.54 SS G_CDS: -0.50 Total: 40.04 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: 5.83 Total: 6.67 kcal Atomic # 7 Polarization: -118.02 SS G_CDS: -5.69 Total: -123.71 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: -0.06 Total: -29.18 kcal Atomic # 14 Polarization: 35.73 SS G_CDS: 2.03 Total: 37.76 kcal Total: -70.05 1.62 -68.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871719870.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.963 kcal (2) G-P(sol) polarization free energy of solvation -70.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds