Wall clock time and date at job start Mon Mar 30 2020 01:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 110.88892 * 2 1 4 4 C 1.55159 * 111.03540 * 123.90409 * 2 1 3 5 5 C 1.54320 * 102.94393 * 153.58985 * 4 2 1 6 6 N 1.47286 * 107.30359 * 337.81560 * 5 4 2 7 7 C 1.34780 * 125.79099 * 178.92510 * 6 5 4 8 8 O 1.21581 * 120.00173 * 180.02562 * 7 6 5 9 9 N 1.34772 * 119.99982 * 359.97438 * 7 6 5 10 10 C 1.39461 * 120.00267 * 175.13172 * 9 7 6 11 11 C 1.38642 * 119.65429 * 185.04685 * 10 9 7 12 12 C 1.40816 * 118.67710 * 179.79909 * 11 10 9 13 13 C 1.41547 * 120.99804 * 180.21543 * 12 11 10 14 14 H 1.08001 * 119.99852 * 203.71623 * 13 12 11 15 15 C 1.40030 * 119.99961 * 23.71177 * 13 12 11 16 16 N 1.30743 * 119.99926 * 17.18105 * 15 13 12 17 17 Si 1.86796 * 120.00108 * 197.17520 * 15 13 12 18 18 H 1.48501 * 109.47084 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47120 * 120.00419 * 17 15 13 20 20 H 1.48502 * 109.47406 * 240.00313 * 17 15 13 21 21 C 1.41165 * 118.00519 * 0.46465 * 12 11 10 22 22 C 1.36589 * 119.12855 * 359.75040 * 21 12 11 23 23 N 1.32069 * 121.25582 * 0.02578 * 22 21 12 24 24 C 1.47423 * 108.55939 * 358.92683 * 6 5 4 25 25 H 1.08998 * 109.47321 * 182.43235 * 1 2 3 26 26 H 1.09001 * 109.46992 * 302.43313 * 1 2 3 27 27 H 1.08997 * 109.46891 * 62.42812 * 1 2 3 28 28 H 1.09006 * 110.71880 * 271.95701 * 4 2 1 29 29 H 1.08996 * 110.72229 * 35.04418 * 4 2 1 30 30 H 1.09006 * 109.88319 * 97.22170 * 5 4 2 31 31 H 1.09004 * 109.88284 * 218.38581 * 5 4 2 32 32 H 0.96998 * 120.00339 * 355.12816 * 9 7 6 33 33 H 1.08004 * 120.65660 * 359.97438 * 11 10 9 34 34 H 0.96997 * 120.00065 * 179.97438 * 16 15 13 35 35 H 1.08001 * 120.43742 * 179.73199 * 21 12 11 36 36 H 1.07994 * 119.37383 * 179.97438 * 22 21 12 37 37 H 1.09003 * 110.36276 * 265.25942 * 24 6 5 38 38 H 1.09005 * 110.36577 * 143.05054 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0869 -0.8078 1.2020 5 6 3.4683 -1.2733 0.6953 6 7 3.4283 -1.2421 -0.7767 7 6 4.4476 -1.5586 -1.5998 8 8 4.2981 -1.4951 -2.8047 9 7 5.6328 -1.9443 -1.0872 10 6 6.6547 -2.3689 -1.9360 11 6 7.8328 -2.8631 -1.3975 12 6 8.8493 -3.2901 -2.2734 13 6 10.0699 -3.8070 -1.7769 14 1 10.9594 -3.7727 -2.3885 15 6 10.1240 -4.3628 -0.4928 16 7 9.0208 -4.7142 0.1145 17 14 11.7725 -4.6025 0.3524 18 1 12.8601 -4.1274 -0.5401 19 1 11.7971 -3.8265 1.6184 20 1 11.9708 -6.0435 0.6513 21 6 8.6166 -3.1821 -3.6616 22 6 7.4249 -2.6777 -4.0988 23 7 6.4914 -2.2908 -3.2485 24 6 2.0852 -0.8062 -1.2005 25 1 -0.3634 -1.0267 0.0436 26 1 -0.3633 0.5512 0.8674 27 1 -0.3633 0.4757 -0.9109 28 1 2.1929 -0.1698 2.0795 29 1 1.4464 -1.6616 1.4228 30 1 4.2433 -0.5985 1.0590 31 1 3.6665 -2.2885 1.0392 32 1 5.7752 -1.9266 -0.1279 33 1 7.9670 -2.9221 -0.3274 34 1 9.0583 -5.0995 1.0038 35 1 9.3711 -3.4939 -4.3687 36 1 7.2429 -2.5930 -5.1599 37 1 1.4522 -1.6703 -1.4025 38 1 2.1536 -0.1720 -2.0844 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871723783.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:31 Heat of formation + Delta-G solvation = -10.947276 kcal Electronic energy + Delta-G solvation = -20795.674814 eV Core-core repulsion = 17637.185992 eV Total energy + Delta-G solvation = -3158.488822 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.58512 -40.14739 -38.60690 -36.13730 -35.55974 -33.79868 -32.43789 -30.59284 -30.38420 -27.94577 -27.24749 -24.38704 -23.80062 -22.97581 -21.26215 -20.99108 -19.49110 -19.22739 -17.74113 -17.21525 -17.02195 -16.21856 -16.10422 -16.04757 -15.67577 -14.91179 -14.69366 -14.53799 -14.33189 -14.17003 -13.96602 -13.59284 -13.29993 -13.18865 -12.92101 -12.65704 -12.65557 -12.09919 -11.98408 -11.90029 -11.60139 -11.58079 -11.52708 -11.29284 -11.16175 -9.96353 -9.68905 -9.62710 -8.85720 -8.65370 -6.56899 0.81785 0.99263 1.41811 1.50002 1.55497 1.58182 2.19742 2.21475 2.81037 2.90377 3.54791 3.66094 3.75448 3.94607 4.11295 4.26153 4.41084 4.55559 4.61853 4.68508 4.75619 4.82300 4.87454 4.91777 4.95343 5.04007 5.07199 5.16913 5.21037 5.30885 5.33326 5.47836 5.49791 5.63574 5.87065 5.95749 6.23101 6.53692 6.78189 6.80542 6.86608 7.53486 7.88252 8.25762 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.025762 B = 0.004204 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.623095 B = 6659.369353 C = 7635.312080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.096 4.096 3 H 0.086 0.914 4 C -0.113 4.113 5 C 0.086 3.914 6 N -0.640 5.640 7 C 0.703 3.297 8 O -0.582 6.582 9 N -0.658 5.658 10 C 0.351 3.649 11 C -0.263 4.263 12 C 0.117 3.883 13 C -0.482 4.482 14 H 0.085 0.915 15 C 0.040 3.960 16 N -0.810 5.810 17 Si 0.989 3.011 18 H -0.258 1.258 19 H -0.261 1.261 20 H -0.265 1.265 21 C -0.298 4.298 22 C 0.115 3.885 23 N -0.584 5.584 24 C 0.121 3.879 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.058 0.942 28 H 0.107 0.893 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.417 0.583 33 H 0.124 0.876 34 H 0.293 0.707 35 H 0.117 0.883 36 H 0.148 0.852 37 H 0.064 0.936 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.291 6.199 9.515 16.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.115 4.115 3 H 0.104 0.896 4 C -0.150 4.150 5 C -0.036 4.036 6 N -0.380 5.380 7 C 0.405 3.595 8 O -0.457 6.457 9 N -0.307 5.307 10 C 0.124 3.876 11 C -0.289 4.289 12 C 0.108 3.892 13 C -0.512 4.512 14 H 0.103 0.897 15 C -0.178 4.178 16 N -0.435 5.435 17 Si 0.809 3.191 18 H -0.182 1.182 19 H -0.185 1.185 20 H -0.190 1.190 21 C -0.322 4.322 22 C -0.038 4.038 23 N -0.304 5.304 24 C -0.001 4.001 25 H 0.080 0.920 26 H 0.097 0.903 27 H 0.077 0.923 28 H 0.126 0.874 29 H 0.107 0.893 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.254 0.746 33 H 0.142 0.858 34 H 0.104 0.896 35 H 0.135 0.865 36 H 0.165 0.835 37 H 0.082 0.918 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.324 6.465 8.479 16.296 hybrid contribution 1.631 -0.705 0.734 1.922 sum -10.693 5.760 9.212 15.244 Atomic orbital electron populations 1.21668 0.91853 1.02785 1.02967 1.22351 0.97409 0.98864 0.92877 0.89567 1.22701 0.93196 1.00918 0.98206 1.22385 1.00923 1.01961 0.78375 1.47798 1.11668 1.71175 1.07336 1.15815 0.80186 0.78737 0.84788 1.90959 1.82075 1.58693 1.13970 1.42438 1.10989 1.67506 1.09788 1.18190 0.86871 0.94143 0.88392 1.21432 0.94927 1.11930 1.00647 1.17987 0.92873 0.87104 0.91211 1.19902 0.95785 1.34996 1.00551 0.89656 1.26858 1.02280 0.91698 0.96944 1.69827 1.31289 1.28124 1.14273 0.85053 0.76841 0.78873 0.78314 1.18151 1.18532 1.19005 1.21842 1.00116 1.14161 0.96125 1.21922 0.89298 0.94248 0.98372 1.67333 1.34092 1.27024 1.01951 1.22322 0.80938 0.98190 0.98678 0.91995 0.90297 0.92274 0.87432 0.89267 0.90846 0.91294 0.74621 0.85842 0.89603 0.86481 0.83514 0.91754 0.92582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.30 71.98 0.67 -0.86 16 2 C -0.10 -1.52 3.64 -9.40 -0.03 -1.56 16 3 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 4 C -0.11 -1.53 6.42 31.78 0.20 -1.33 16 5 C 0.09 1.82 6.19 86.68 0.54 2.35 16 6 N -0.64 -20.00 3.34 -829.09 -2.77 -22.77 16 7 C 0.70 30.37 8.45 179.05 1.51 31.89 16 8 O -0.58 -30.59 14.86 -3.97 -0.06 -30.65 16 9 N -0.66 -28.56 5.35 -322.37 -1.72 -30.29 16 10 C 0.35 18.33 7.42 132.76 0.98 19.32 16 11 C -0.26 -14.04 8.63 23.00 0.20 -13.84 16 12 C 0.12 6.38 5.60 -21.11 -0.12 6.26 16 13 C -0.48 -25.20 9.12 23.52 0.21 -24.99 16 14 H 0.09 4.27 7.90 -2.91 -0.02 4.24 16 15 C 0.04 1.90 5.19 85.29 0.44 2.34 16 16 N -0.81 -39.89 10.94 21.84 0.24 -39.65 16 17 Si 0.99 35.79 29.59 68.60 2.03 37.82 16 18 H -0.26 -9.23 7.11 99.48 0.71 -8.52 16 19 H -0.26 -8.96 7.11 99.48 0.71 -8.26 16 20 H -0.27 -9.21 7.11 99.48 0.71 -8.50 16 21 C -0.30 -15.31 9.85 22.60 0.22 -15.09 16 22 C 0.11 5.82 11.10 84.27 0.94 6.76 16 23 N -0.58 -32.15 7.86 -194.27 -1.53 -33.68 16 24 C 0.12 3.11 6.37 86.85 0.55 3.66 16 25 H 0.06 0.68 8.11 -2.39 -0.02 0.67 16 26 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.11 0.97 8.14 -2.38 -0.02 0.95 16 29 H 0.09 1.05 8.01 -2.39 -0.02 1.04 16 30 H 0.07 1.44 8.13 -2.38 -0.02 1.42 16 31 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.42 15.01 7.69 -92.71 -0.71 14.30 16 33 H 0.12 6.49 6.21 -2.91 -0.02 6.47 16 34 H 0.29 12.77 8.29 -92.71 -0.77 12.00 16 35 H 0.12 5.44 8.06 -2.91 -0.02 5.42 16 36 H 0.15 6.46 8.06 -2.91 -0.02 6.44 16 37 H 0.06 1.61 8.04 -2.39 -0.02 1.59 16 38 H 0.06 1.65 8.04 -2.38 -0.02 1.63 16 Total: -1.00 -72.24 317.77 2.87 -69.36 By element: Atomic # 1 Polarization: 34.58 SS G_CDS: 0.36 Total: 34.94 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: 6.32 Total: 14.91 kcal Atomic # 7 Polarization: -120.61 SS G_CDS: -5.78 Total: -126.38 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: -0.06 Total: -30.65 kcal Atomic # 14 Polarization: 35.79 SS G_CDS: 2.03 Total: 37.82 kcal Total: -72.24 2.87 -69.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871723783.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.417 kcal (2) G-P(sol) polarization free energy of solvation -72.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds