Wall clock time and date at job start Mon Mar 30 2020 01:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 112.73962 * 2 1 4 4 C 1.53497 * 113.51650 * 229.20546 * 2 1 3 5 5 C 1.53759 * 83.25566 * 218.97441 * 4 2 1 6 6 H 1.08998 * 113.46615 * 271.50500 * 5 4 2 7 7 C 1.52999 * 113.54954 * 140.98967 * 5 4 2 8 8 N 1.47058 * 87.88883 * 26.24321 * 5 4 2 9 9 C 1.34776 * 136.05937 * 152.96315 * 8 5 4 10 10 O 1.21585 * 120.00251 * 179.62788 * 9 8 5 11 11 N 1.34778 * 120.00270 * 359.62537 * 9 8 5 12 12 C 1.39452 * 120.00427 * 185.61618 * 11 9 8 13 13 C 1.38641 * 119.65030 * 185.40856 * 12 11 9 14 14 C 1.40818 * 118.67825 * 180.02562 * 13 12 11 15 15 C 1.41539 * 121.00127 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00336 * 152.78609 * 15 14 13 17 17 C 1.40034 * 119.99713 * 332.78343 * 15 14 13 18 18 N 1.30751 * 119.99621 * 161.06128 * 17 15 14 19 19 Si 1.86793 * 120.00152 * 341.05494 * 17 15 14 20 20 H 1.48506 * 109.47033 * 90.41840 * 19 17 15 21 21 H 1.48502 * 109.47436 * 210.41088 * 19 17 15 22 22 H 1.48495 * 109.47203 * 330.41605 * 19 17 15 23 23 C 1.41172 * 118.00171 * 359.76278 * 14 13 12 24 24 C 1.36584 * 119.12863 * 0.47849 * 23 14 13 25 25 N 1.32074 * 121.25963 * 359.50079 * 24 23 14 26 26 H 1.09008 * 109.46874 * 308.75789 * 1 2 3 27 27 H 1.09001 * 109.47396 * 68.75901 * 1 2 3 28 28 H 1.09005 * 109.47316 * 188.76101 * 1 2 3 29 29 H 1.08993 * 114.21054 * 332.73110 * 4 2 1 30 30 H 1.09002 * 114.20270 * 105.36285 * 4 2 1 31 31 H 1.08997 * 109.47471 * 302.13650 * 7 5 4 32 32 H 1.09000 * 109.47365 * 62.13387 * 7 5 4 33 33 H 1.08999 * 109.47157 * 182.13566 * 7 5 4 34 34 H 0.96998 * 119.99411 * 5.61658 * 11 9 8 35 35 H 1.08004 * 120.66052 * 0.03907 * 13 12 11 36 36 H 0.97000 * 119.99421 * 180.02562 * 18 17 15 37 37 H 1.07998 * 120.43277 * 180.26203 * 23 14 13 38 38 H 1.07999 * 119.37331 * 179.78233 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9513 1.0053 0.0000 4 6 2.1425 -0.9196 -1.0655 5 6 3.1589 -1.2290 0.0459 6 1 4.0097 -0.5478 0.0580 7 6 3.5769 -2.6998 0.0998 8 7 2.1157 -0.8806 1.0220 9 6 1.8268 -1.2160 2.2950 10 8 0.8581 -0.7307 2.8467 11 7 2.6117 -2.0893 2.9566 12 6 2.2494 -2.5263 4.2303 13 6 3.1153 -3.3353 4.9500 14 6 2.7285 -3.7651 6.2340 15 6 3.5739 -4.5924 7.0112 16 1 3.5138 -4.5651 8.0892 17 6 4.4884 -5.4464 6.3824 18 7 5.5038 -5.9248 7.0531 19 14 4.2577 -5.9021 4.5857 20 1 4.9762 -4.9234 3.7306 21 1 4.8027 -7.2626 4.3461 22 1 2.8108 -5.8827 4.2520 23 6 1.4741 -3.3424 6.7246 24 6 0.6864 -2.5489 5.9400 25 7 1.0810 -2.1643 4.7397 26 1 -0.3633 0.6434 0.8014 27 1 -0.3634 0.3723 -0.9578 28 1 -0.3634 -1.0157 0.1565 29 1 1.5106 -1.7625 -1.3452 30 1 2.5623 -0.3928 -1.9225 31 1 2.6943 -3.3235 0.2410 32 1 4.0686 -2.9723 -0.8341 33 1 4.2657 -2.8515 0.9308 34 1 3.4287 -2.4140 2.5466 35 1 4.0676 -3.6298 4.5342 36 1 6.1374 -6.5161 6.6174 37 1 1.1401 -3.6453 7.7059 38 1 -0.2755 -2.2261 6.3100 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871730873.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:14 Heat of formation + Delta-G solvation = 49.089606 kcal Electronic energy + Delta-G solvation = -21351.899024 eV Core-core repulsion = 18196.013597 eV Total energy + Delta-G solvation = -3155.885427 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.71622 -39.05934 -37.41362 -34.37047 -33.80481 -31.52034 -31.26584 -30.27245 -28.49697 -27.33878 -25.97174 -22.77525 -22.32634 -21.52433 -20.73595 -19.30737 -17.87520 -17.74236 -16.24218 -15.73056 -15.29253 -14.92382 -14.59729 -14.26843 -14.21386 -14.06035 -13.77016 -13.24150 -13.07281 -12.93914 -12.65735 -12.38246 -11.88750 -11.71509 -11.65459 -11.56672 -11.51218 -10.95110 -10.80019 -10.71704 -10.44379 -10.02193 -9.82377 -9.58283 -9.35057 -8.56078 -8.21707 -7.83061 -7.20814 -7.08841 -4.73002 2.44832 2.62814 2.64498 2.99112 3.11061 3.24103 3.72947 3.86708 4.01031 4.17008 4.57663 4.77923 4.86477 4.95507 5.09639 5.12551 5.26269 5.42351 5.45742 5.52646 5.61001 5.72862 5.76955 5.92223 5.99834 6.13608 6.30394 6.40199 6.42816 6.46673 6.61615 6.95541 7.16599 7.31609 7.44104 7.67432 7.97491 8.20845 8.31559 8.46978 8.65716 9.07363 9.54075 9.91963 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022711 B = 0.005735 C = 0.004750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.578296 B = 4881.466748 C = 5893.426230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.152 3.848 3 H 0.086 0.914 4 C -0.147 4.147 5 C 0.120 3.880 6 H 0.090 0.910 7 C -0.167 4.167 8 N -0.665 5.665 9 C 0.724 3.276 10 O -0.525 6.525 11 N -0.671 5.671 12 C 0.390 3.610 13 C -0.332 4.332 14 C 0.130 3.870 15 C -0.437 4.437 16 H 0.096 0.904 17 C 0.087 3.913 18 N -0.797 5.797 19 Si 0.920 3.080 20 H -0.270 1.270 21 H -0.290 1.290 22 H -0.248 1.248 23 C -0.275 4.275 24 C 0.131 3.869 25 N -0.557 5.557 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.401 0.599 35 H 0.109 0.891 36 H 0.288 0.712 37 H 0.109 0.891 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.126 5.630 -16.568 17.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.048 3.952 3 H 0.104 0.896 4 C -0.185 4.185 5 C 0.016 3.984 6 H 0.108 0.892 7 C -0.225 4.225 8 N -0.409 5.409 9 C 0.427 3.573 10 O -0.395 6.395 11 N -0.319 5.319 12 C 0.161 3.839 13 C -0.358 4.358 14 C 0.122 3.878 15 C -0.467 4.467 16 H 0.114 0.886 17 C -0.134 4.134 18 N -0.420 5.420 19 Si 0.746 3.254 20 H -0.197 1.197 21 H -0.218 1.218 22 H -0.171 1.171 23 C -0.299 4.299 24 C -0.021 4.021 25 N -0.277 5.277 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.114 0.886 30 H 0.105 0.895 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.237 0.763 35 H 0.127 0.873 36 H 0.098 0.902 37 H 0.127 0.873 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.287 6.341 -16.350 17.685 hybrid contribution 1.306 -1.005 -0.284 1.672 sum -0.981 5.336 -16.633 17.496 Atomic orbital electron populations 1.21897 0.94005 1.03264 1.01810 1.22349 0.95288 0.94153 0.83404 0.89581 1.23648 0.98292 1.00514 0.96039 1.22646 0.92425 0.96831 0.86491 0.89179 1.22123 1.02320 0.95348 1.02715 1.49261 1.31484 1.49396 1.10726 1.15417 0.83264 0.80100 0.78517 1.91010 1.28209 1.55364 1.64920 1.42803 1.26028 1.46702 1.16396 1.17787 0.90979 0.91648 0.83482 1.21240 1.01772 1.12631 1.00139 1.17656 0.90684 0.89595 0.89890 1.19507 1.13050 1.17885 0.96265 0.88638 1.26202 0.92163 0.94149 1.00882 1.69665 1.08443 1.24198 1.39737 0.86242 0.81235 0.76378 0.81496 1.19697 1.21791 1.17140 1.21639 0.96734 1.09057 1.02433 1.21606 0.97871 0.93273 0.89303 1.67299 1.15716 1.29604 1.15061 0.91543 0.91781 0.92014 0.88650 0.89488 0.91466 0.90532 0.92252 0.76261 0.87332 0.90175 0.87288 0.85442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.25 37.16 0.34 -1.44 16 2 C 0.15 1.69 4.67 -72.40 -0.34 1.35 16 3 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 4 C -0.15 -1.19 7.58 -26.08 -0.20 -1.39 16 5 C 0.12 1.22 4.60 -72.27 -0.33 0.88 16 6 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 7 C -0.17 -1.67 8.83 37.16 0.33 -1.34 16 8 N -0.67 -9.75 3.44 -175.26 -0.60 -10.36 16 9 C 0.72 14.53 8.55 -86.92 -0.74 13.79 16 10 O -0.52 -12.59 14.85 5.29 0.08 -12.51 16 11 N -0.67 -13.71 5.28 -15.86 -0.08 -13.79 16 12 C 0.39 9.44 7.41 -154.68 -1.15 8.30 16 13 C -0.33 -8.20 7.26 -38.46 -0.28 -8.48 16 14 C 0.13 3.35 5.18 -106.55 -0.55 2.80 16 15 C -0.44 -11.66 9.64 -37.65 -0.36 -12.02 16 16 H 0.10 2.64 8.06 -52.49 -0.42 2.21 16 17 C 0.09 2.22 5.43 -17.34 -0.09 2.13 16 18 N -0.80 -20.51 13.92 55.55 0.77 -19.74 16 19 Si 0.92 20.35 24.56 -169.99 -4.18 16.18 16 20 H -0.27 -5.63 6.43 56.52 0.36 -5.26 16 21 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.25 -5.78 7.03 56.52 0.40 -5.38 16 23 C -0.27 -6.60 9.85 -39.07 -0.38 -6.98 16 24 C 0.13 3.08 11.10 -18.04 -0.20 2.88 16 25 N -0.56 -14.16 7.90 -12.76 -0.10 -14.26 16 26 H 0.07 0.92 8.14 -51.92 -0.42 0.49 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.09 0.79 8.11 -51.93 -0.42 0.37 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.63 6.72 -51.93 -0.35 0.28 16 34 H 0.40 7.02 6.12 -40.82 -0.25 6.77 16 35 H 0.11 2.58 4.41 -52.48 -0.23 2.35 16 36 H 0.29 6.66 8.29 -40.82 -0.34 6.32 16 37 H 0.11 2.39 8.06 -52.49 -0.42 1.97 16 38 H 0.13 2.59 8.06 -52.49 -0.42 2.17 16 LS Contribution 312.80 15.07 4.71 4.71 Total: -1.00 -32.42 312.80 -8.43 -40.86 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -5.08 Total: 8.43 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -3.96 Total: 0.49 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: -0.01 Total: -58.15 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: 0.08 Total: -12.51 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.18 Total: 16.18 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.42 -8.43 -40.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871730873.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.945 kcal (2) G-P(sol) polarization free energy of solvation -32.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds