Wall clock time and date at job start Mon Mar 30 2020 01:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 112.73962 * 2 1 4 4 C 1.53497 * 113.51650 * 229.20546 * 2 1 3 5 5 C 1.53759 * 83.25566 * 218.97441 * 4 2 1 6 6 H 1.08998 * 113.46615 * 271.50500 * 5 4 2 7 7 C 1.52999 * 113.54954 * 140.98967 * 5 4 2 8 8 N 1.47058 * 87.88883 * 26.24321 * 5 4 2 9 9 C 1.34776 * 136.05937 * 152.96315 * 8 5 4 10 10 O 1.21585 * 120.00251 * 179.62788 * 9 8 5 11 11 N 1.34778 * 120.00270 * 359.62537 * 9 8 5 12 12 C 1.39452 * 120.00427 * 185.61618 * 11 9 8 13 13 C 1.38641 * 119.65030 * 185.40856 * 12 11 9 14 14 C 1.40818 * 118.67825 * 180.02562 * 13 12 11 15 15 C 1.41539 * 121.00127 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00336 * 152.78609 * 15 14 13 17 17 C 1.40034 * 119.99713 * 332.78343 * 15 14 13 18 18 N 1.30751 * 119.99621 * 161.06128 * 17 15 14 19 19 Si 1.86793 * 120.00152 * 341.05494 * 17 15 14 20 20 H 1.48506 * 109.47033 * 90.41840 * 19 17 15 21 21 H 1.48502 * 109.47436 * 210.41088 * 19 17 15 22 22 H 1.48495 * 109.47203 * 330.41605 * 19 17 15 23 23 C 1.41172 * 118.00171 * 359.76278 * 14 13 12 24 24 C 1.36584 * 119.12863 * 0.47849 * 23 14 13 25 25 N 1.32074 * 121.25963 * 359.50079 * 24 23 14 26 26 H 1.09008 * 109.46874 * 308.75789 * 1 2 3 27 27 H 1.09001 * 109.47396 * 68.75901 * 1 2 3 28 28 H 1.09005 * 109.47316 * 188.76101 * 1 2 3 29 29 H 1.08993 * 114.21054 * 332.73110 * 4 2 1 30 30 H 1.09002 * 114.20270 * 105.36285 * 4 2 1 31 31 H 1.08997 * 109.47471 * 302.13650 * 7 5 4 32 32 H 1.09000 * 109.47365 * 62.13387 * 7 5 4 33 33 H 1.08999 * 109.47157 * 182.13566 * 7 5 4 34 34 H 0.96998 * 119.99411 * 5.61658 * 11 9 8 35 35 H 1.08004 * 120.66052 * 0.03907 * 13 12 11 36 36 H 0.97000 * 119.99421 * 180.02562 * 18 17 15 37 37 H 1.07998 * 120.43277 * 180.26203 * 23 14 13 38 38 H 1.07999 * 119.37331 * 179.78233 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9513 1.0053 0.0000 4 6 2.1425 -0.9196 -1.0655 5 6 3.1589 -1.2290 0.0459 6 1 4.0097 -0.5478 0.0580 7 6 3.5769 -2.6998 0.0998 8 7 2.1157 -0.8806 1.0220 9 6 1.8268 -1.2160 2.2950 10 8 0.8581 -0.7307 2.8467 11 7 2.6117 -2.0893 2.9566 12 6 2.2494 -2.5263 4.2303 13 6 3.1153 -3.3353 4.9500 14 6 2.7285 -3.7651 6.2340 15 6 3.5739 -4.5924 7.0112 16 1 3.5138 -4.5651 8.0892 17 6 4.4884 -5.4464 6.3824 18 7 5.5038 -5.9248 7.0531 19 14 4.2577 -5.9021 4.5857 20 1 4.9762 -4.9234 3.7306 21 1 4.8027 -7.2626 4.3461 22 1 2.8108 -5.8827 4.2520 23 6 1.4741 -3.3424 6.7246 24 6 0.6864 -2.5489 5.9400 25 7 1.0810 -2.1643 4.7397 26 1 -0.3633 0.6434 0.8014 27 1 -0.3634 0.3723 -0.9578 28 1 -0.3634 -1.0157 0.1565 29 1 1.5106 -1.7625 -1.3452 30 1 2.5623 -0.3928 -1.9225 31 1 2.6943 -3.3235 0.2410 32 1 4.0686 -2.9723 -0.8341 33 1 4.2657 -2.8515 0.9308 34 1 3.4287 -2.4140 2.5466 35 1 4.0676 -3.6298 4.5342 36 1 6.1374 -6.5161 6.6174 37 1 1.1401 -3.6453 7.7059 38 1 -0.2755 -2.2261 6.3100 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871730873.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:14 Heat of formation + Delta-G solvation = 27.995271 kcal Electronic energy + Delta-G solvation = -21352.813743 eV Core-core repulsion = 18196.013597 eV Total energy + Delta-G solvation = -3156.800146 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.92315 -40.66691 -38.96028 -36.15769 -35.61099 -33.23275 -32.43800 -31.59009 -30.00575 -28.26571 -27.91770 -24.20545 -24.09428 -22.42229 -22.25331 -20.74715 -19.58050 -19.03983 -17.93228 -17.41759 -16.69041 -16.46352 -16.19452 -16.03269 -15.38354 -15.27943 -14.88682 -14.82720 -14.73668 -14.39953 -14.02605 -13.54586 -13.28950 -12.86516 -12.78753 -12.67831 -12.61095 -12.52793 -12.42840 -12.35077 -11.83977 -11.57254 -11.32437 -11.25955 -11.06194 -10.17924 -9.78819 -9.64339 -9.03828 -8.96853 -6.75185 0.59117 0.74088 1.19367 1.35929 1.36481 1.44701 2.06383 2.19285 2.64520 2.73265 3.40669 3.52705 3.85811 3.99018 4.06845 4.19769 4.25210 4.28876 4.39350 4.51300 4.58174 4.64579 4.70480 4.75249 4.81926 4.90866 5.02957 5.05479 5.11329 5.13398 5.28943 5.32170 5.45307 5.52129 5.68679 5.98841 6.13077 6.27696 6.51793 6.65830 6.93131 7.49234 7.77332 8.03867 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022711 B = 0.005735 C = 0.004750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.578296 B = 4881.466748 C = 5893.426230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.139 3.861 3 H 0.107 0.893 4 C -0.120 4.120 5 C 0.115 3.885 6 H 0.116 0.884 7 C -0.169 4.169 8 N -0.671 5.671 9 C 0.716 3.284 10 O -0.576 6.576 11 N -0.665 5.665 12 C 0.385 3.615 13 C -0.339 4.339 14 C 0.116 3.884 15 C -0.467 4.467 16 H 0.070 0.930 17 C 0.057 3.943 18 N -0.824 5.824 19 Si 0.967 3.033 20 H -0.247 1.247 21 H -0.269 1.269 22 H -0.269 1.269 23 C -0.285 4.285 24 C 0.130 3.870 25 N -0.579 5.579 26 H 0.036 0.964 27 H 0.100 0.900 28 H 0.036 0.964 29 H 0.094 0.906 30 H 0.131 0.869 31 H 0.045 0.955 32 H 0.109 0.891 33 H 0.049 0.951 34 H 0.414 0.586 35 H 0.118 0.882 36 H 0.300 0.700 37 H 0.122 0.878 38 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.233 6.148 -20.160 21.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.036 3.964 3 H 0.124 0.876 4 C -0.157 4.157 5 C 0.013 3.987 6 H 0.133 0.867 7 C -0.226 4.226 8 N -0.413 5.413 9 C 0.419 3.581 10 O -0.450 6.450 11 N -0.315 5.315 12 C 0.155 3.845 13 C -0.365 4.365 14 C 0.107 3.893 15 C -0.497 4.497 16 H 0.088 0.912 17 C -0.162 4.162 18 N -0.449 5.449 19 Si 0.790 3.210 20 H -0.172 1.172 21 H -0.195 1.195 22 H -0.194 1.194 23 C -0.309 4.309 24 C -0.022 4.022 25 N -0.299 5.299 26 H 0.055 0.945 27 H 0.118 0.882 28 H 0.055 0.945 29 H 0.112 0.888 30 H 0.149 0.851 31 H 0.064 0.936 32 H 0.127 0.873 33 H 0.068 0.932 34 H 0.252 0.748 35 H 0.135 0.865 36 H 0.111 0.889 37 H 0.140 0.860 38 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -1.334 6.866 -20.009 21.196 hybrid contribution 0.986 -1.083 0.789 1.664 sum -0.348 5.783 -19.220 20.074 Atomic orbital electron populations 1.21860 0.94903 1.01134 1.02628 1.22823 0.94848 0.95495 0.83186 0.87564 1.23583 0.96609 0.99661 0.95861 1.23083 0.92805 0.97496 0.85324 0.86657 1.22160 1.01446 0.94926 1.04101 1.49497 1.33249 1.49388 1.09152 1.15656 0.82716 0.79757 0.79988 1.90959 1.30190 1.57075 1.66821 1.42756 1.26674 1.46782 1.15313 1.18016 0.90506 0.91153 0.84785 1.21309 1.02267 1.12984 0.99970 1.17861 0.91210 0.89598 0.90601 1.19510 1.14967 1.19918 0.95312 0.91211 1.26821 0.91551 0.93523 1.04291 1.69660 1.09029 1.24788 1.41408 0.85517 0.80118 0.77746 0.77586 1.17180 1.19534 1.19360 1.21840 0.96474 1.09346 1.03242 1.22081 0.98841 0.92486 0.88751 1.67433 1.16473 1.30135 1.15828 0.94479 0.88187 0.94523 0.88767 0.85117 0.93561 0.87254 0.93154 0.74784 0.86495 0.88861 0.85953 0.82520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 9.25 71.98 0.67 -2.60 16 2 C 0.14 2.69 4.67 41.79 0.20 2.88 16 3 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 4 C -0.12 -1.37 7.58 31.02 0.24 -1.14 16 5 C 0.11 1.89 4.60 41.88 0.19 2.09 16 6 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 7 C -0.17 -2.83 8.83 71.98 0.64 -2.19 16 8 N -0.67 -18.47 3.44 -826.66 -2.84 -21.31 16 9 C 0.72 28.55 8.55 179.05 1.53 30.08 16 10 O -0.58 -28.14 14.85 -3.98 -0.06 -28.20 16 11 N -0.67 -26.90 5.28 -322.36 -1.70 -28.60 16 12 C 0.39 18.72 7.41 132.76 0.98 19.71 16 13 C -0.34 -16.80 7.26 23.00 0.17 -16.63 16 14 C 0.12 6.07 5.18 -21.11 -0.11 5.96 16 15 C -0.47 -25.67 9.64 23.52 0.23 -25.44 16 16 H 0.07 4.06 8.06 -2.91 -0.02 4.03 16 17 C 0.06 2.92 5.43 85.29 0.46 3.39 16 18 N -0.82 -42.66 13.92 21.84 0.30 -42.35 16 19 Si 0.97 41.09 24.56 68.60 1.69 42.78 16 20 H -0.25 -9.47 6.43 99.48 0.64 -8.83 16 21 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 22 H -0.27 -12.33 7.03 99.48 0.70 -11.63 16 23 C -0.29 -13.90 9.85 22.60 0.22 -13.68 16 24 C 0.13 6.12 11.10 84.27 0.94 7.05 16 25 N -0.58 -29.65 7.90 -194.27 -1.53 -31.18 16 26 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 27 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 29 H 0.09 1.18 8.11 -2.39 -0.02 1.16 16 30 H 0.13 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.05 0.94 6.72 -2.39 -0.02 0.92 16 34 H 0.41 13.98 6.12 -92.71 -0.57 13.41 16 35 H 0.12 5.46 4.41 -2.91 -0.01 5.45 16 36 H 0.30 13.75 8.29 -92.71 -0.77 12.98 16 37 H 0.12 5.47 8.06 -2.91 -0.02 5.45 16 38 H 0.16 6.27 8.06 -2.91 -0.02 6.25 16 Total: -1.00 -73.58 312.80 2.63 -70.95 By element: Atomic # 1 Polarization: 27.99 SS G_CDS: 0.44 Total: 28.43 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: 6.34 Total: 9.48 kcal Atomic # 7 Polarization: -117.67 SS G_CDS: -5.77 Total: -123.45 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: -0.06 Total: -28.20 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 1.69 Total: 42.78 kcal Total: -73.58 2.63 -70.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871730873.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.948 kcal (2) G-P(sol) polarization free energy of solvation -73.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds