Wall clock time and date at job start Mon Mar 30 2020 01:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 113.04720 * 2 1 4 4 C 1.53939 * 113.76909 * 228.23785 * 2 1 3 5 5 H 1.08999 * 113.74106 * 23.65653 * 4 2 1 6 6 C 1.53002 * 113.73981 * 154.85761 * 4 2 1 7 7 C 1.53947 * 86.29305 * 269.31125 * 4 2 1 8 8 N 1.47576 * 86.11275 * 336.38994 * 7 4 2 9 9 C 1.34779 * 134.49207 * 204.63259 * 8 7 4 10 10 O 1.21577 * 120.00306 * 180.02562 * 9 8 7 11 11 N 1.34783 * 119.99879 * 0.02562 * 9 8 7 12 12 C 1.39455 * 119.99767 * 174.97024 * 11 9 8 13 13 C 1.38644 * 119.64905 * 185.35466 * 12 11 9 14 14 C 1.40823 * 118.67810 * 179.97438 * 13 12 11 15 15 C 1.41540 * 120.99592 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00129 * 151.71697 * 15 14 13 17 17 C 1.40034 * 120.00175 * 331.70815 * 15 14 13 18 18 N 1.30742 * 119.99935 * 350.15770 * 17 15 14 19 19 Si 1.86797 * 119.99854 * 170.15936 * 17 15 14 20 20 H 1.48501 * 109.47427 * 90.00216 * 19 17 15 21 21 H 1.48508 * 109.46772 * 209.99928 * 19 17 15 22 22 H 1.48499 * 109.47065 * 329.99743 * 19 17 15 23 23 C 1.41158 * 118.00346 * 0.02562 * 14 13 12 24 24 C 1.36587 * 119.13022 * 359.97438 * 23 14 13 25 25 N 1.32071 * 121.25759 * 359.74369 * 24 23 14 26 26 H 1.08997 * 109.47739 * 191.75722 * 1 2 3 27 27 H 1.09001 * 109.47202 * 311.76137 * 1 2 3 28 28 H 1.09004 * 109.46753 * 71.75626 * 1 2 3 29 29 H 1.08997 * 109.47606 * 58.07720 * 6 4 2 30 30 H 1.09005 * 109.46904 * 178.08143 * 6 4 2 31 31 H 1.09000 * 109.46957 * 298.07198 * 6 4 2 32 32 H 1.08992 * 113.76933 * 90.69828 * 7 4 2 33 33 H 1.09002 * 113.76499 * 222.09360 * 7 4 2 34 34 H 0.96996 * 119.99802 * 354.97546 * 11 9 8 35 35 H 1.08000 * 120.66105 * 359.96735 * 13 12 11 36 36 H 0.96998 * 120.00153 * 180.02562 * 18 17 15 37 37 H 1.08000 * 120.43785 * 179.97438 * 23 14 13 38 38 H 1.08007 * 119.37621 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9567 1.0030 0.0000 4 6 2.1504 -0.9383 -1.0509 5 1 1.4909 -1.1525 -1.8918 6 6 3.5590 -0.5296 -1.4865 7 6 2.1272 -2.0185 0.0458 8 7 2.1248 -0.8993 1.0077 9 6 2.5106 -0.7561 2.2911 10 8 2.3856 0.3178 2.8472 11 7 3.0349 -1.8034 2.9581 12 6 3.5305 -1.6299 4.2500 13 6 4.1685 -2.6831 4.8871 14 6 4.6615 -2.4852 6.1912 15 6 5.3212 -3.5264 6.8869 16 1 6.0666 -3.2904 7.6319 17 6 5.0072 -4.8626 6.6094 18 7 3.9785 -5.1493 5.8552 19 14 6.0583 -6.2353 7.3167 20 1 5.5173 -6.6421 8.6385 21 1 6.0388 -7.3990 6.3944 22 1 7.4544 -5.7560 7.4795 23 6 4.4781 -1.2172 6.7838 24 6 3.8366 -0.2398 6.0776 25 7 3.3916 -0.4586 4.8535 26 1 -0.3634 -1.0060 0.2094 27 1 -0.3634 0.6845 0.7666 28 1 -0.3633 0.3217 -0.9761 29 1 4.2135 -0.4963 -0.6155 30 1 3.9432 -1.2565 -2.2022 31 1 3.5238 0.4552 -1.9524 32 1 1.2128 -2.6114 0.0591 33 1 3.0308 -2.6271 0.0821 34 1 3.0676 -2.6778 2.5394 35 1 4.2849 -3.6364 4.3931 36 1 3.7607 -6.0748 5.6633 37 1 4.8403 -1.0224 7.7824 38 1 3.6937 0.7318 6.5273 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871732375.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:01 Heat of formation + Delta-G solvation = 42.078985 kcal Electronic energy + Delta-G solvation = -20937.883964 eV Core-core repulsion = 17781.694534 eV Total energy + Delta-G solvation = -3156.189430 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.51118 -38.86796 -37.28760 -34.22223 -33.64997 -31.16324 -30.49028 -30.28612 -28.37262 -26.47208 -25.95001 -23.83544 -21.97090 -21.63412 -20.21341 -18.60402 -17.66141 -17.52116 -16.06653 -15.83707 -15.40250 -14.80714 -14.30571 -14.16853 -14.13942 -13.75108 -13.30808 -13.06468 -12.82737 -12.57411 -12.50220 -12.45215 -12.19276 -11.78497 -11.48214 -11.35080 -11.18613 -11.16473 -10.88234 -10.42541 -10.25298 -10.11796 -9.71216 -9.43786 -9.35321 -8.41950 -7.91676 -7.67872 -6.99031 -6.72477 -4.60027 2.70398 2.78887 2.82765 3.02483 3.07288 3.26234 3.86895 3.90200 4.11881 4.28343 4.71476 4.74579 4.99191 5.14141 5.18207 5.22281 5.40748 5.50321 5.65233 5.69289 5.72813 5.79611 5.84237 5.92898 6.08599 6.15761 6.25970 6.62528 6.68068 6.84114 6.99578 7.14960 7.41906 7.52448 7.58376 7.89648 8.13888 8.44932 8.50968 8.75166 8.78768 9.24756 9.76270 10.13427 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.024043 B = 0.004410 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.290833 B = 6347.289243 C = 7062.762532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.156 3.844 3 H 0.087 0.913 4 C -0.121 4.121 5 H 0.090 0.910 6 C -0.133 4.133 7 C 0.099 3.901 8 N -0.662 5.662 9 C 0.715 3.285 10 O -0.532 6.532 11 N -0.665 5.665 12 C 0.355 3.645 13 C -0.241 4.241 14 C 0.146 3.854 15 C -0.457 4.457 16 H 0.081 0.919 17 C 0.076 3.924 18 N -0.797 5.797 19 Si 0.913 3.087 20 H -0.269 1.269 21 H -0.276 1.276 22 H -0.261 1.261 23 C -0.282 4.282 24 C 0.119 3.881 25 N -0.552 5.552 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.403 0.597 35 H 0.128 0.872 36 H 0.280 0.720 37 H 0.102 0.898 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.268 0.913 -13.929 14.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.051 3.949 3 H 0.105 0.895 4 C -0.140 4.140 5 H 0.108 0.892 6 C -0.190 4.190 7 C -0.024 4.024 8 N -0.405 5.405 9 C 0.418 3.582 10 O -0.403 6.403 11 N -0.312 5.312 12 C 0.129 3.871 13 C -0.267 4.267 14 C 0.137 3.863 15 C -0.489 4.489 16 H 0.099 0.901 17 C -0.142 4.142 18 N -0.424 5.424 19 Si 0.738 3.262 20 H -0.194 1.194 21 H -0.201 1.201 22 H -0.184 1.184 23 C -0.306 4.306 24 C -0.035 4.035 25 N -0.270 5.270 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.237 0.763 35 H 0.146 0.854 36 H 0.091 0.909 37 H 0.120 0.880 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.850 2.273 -13.866 14.569 hybrid contribution 0.694 -2.020 0.690 2.245 sum -3.155 0.252 -13.177 13.552 Atomic orbital electron populations 1.21972 0.94273 1.02805 1.02328 1.22507 0.93469 0.95839 0.83065 0.89469 1.23013 0.98223 0.96323 0.96444 0.89171 1.21547 0.94729 1.01262 1.01502 1.23192 1.01798 0.91552 0.85866 1.49408 1.66987 1.14380 1.09748 1.15655 0.78835 0.84799 0.78949 1.91004 1.58484 1.25539 1.65235 1.42524 1.63046 1.11062 1.14605 1.17992 0.94067 0.91424 0.83655 1.21547 1.09697 0.98617 0.96820 1.17565 0.87593 0.91342 0.89784 1.19555 1.20117 0.89882 1.19358 0.90066 1.25928 0.94191 1.00329 0.93707 1.69757 1.21907 1.21044 1.29660 0.86228 0.81064 0.79559 0.79375 1.19416 1.20111 1.18441 1.21703 1.11078 0.96808 1.00977 1.21494 0.94763 0.97521 0.89753 1.67218 1.26865 1.21520 1.11445 0.92101 0.91707 0.91155 0.92069 0.92142 0.92105 0.90227 0.90384 0.76297 0.85385 0.90889 0.87980 0.86009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.83 37.16 0.37 -1.24 16 2 C 0.16 1.88 4.59 -66.87 -0.31 1.57 16 3 H 0.09 1.13 8.10 -51.93 -0.42 0.71 16 4 C -0.12 -1.10 4.19 -89.70 -0.38 -1.47 16 5 H 0.09 0.60 8.10 -51.93 -0.42 0.18 16 6 C -0.13 -1.20 9.64 37.16 0.36 -0.85 16 7 C 0.10 1.06 7.63 -2.98 -0.02 1.04 16 8 N -0.66 -10.19 3.28 -176.58 -0.58 -10.77 16 9 C 0.71 15.08 8.72 -86.91 -0.76 14.32 16 10 O -0.53 -13.58 15.33 5.30 0.08 -13.50 16 11 N -0.67 -14.18 5.39 -15.86 -0.09 -14.27 16 12 C 0.35 9.04 7.42 -154.68 -1.15 7.89 16 13 C -0.24 -6.29 8.60 -38.45 -0.33 -6.62 16 14 C 0.15 3.91 5.58 -106.55 -0.59 3.32 16 15 C -0.46 -11.95 9.13 -37.65 -0.34 -12.29 16 16 H 0.08 2.03 7.87 -52.49 -0.41 1.61 16 17 C 0.08 1.87 5.30 -17.34 -0.09 1.77 16 18 N -0.80 -19.98 10.83 55.55 0.60 -19.38 16 19 Si 0.91 18.17 29.57 -169.99 -5.03 13.14 16 20 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 21 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 22 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 23 C -0.28 -7.10 9.85 -39.07 -0.38 -7.48 16 24 C 0.12 2.96 11.10 -18.05 -0.20 2.76 16 25 N -0.55 -14.80 7.86 -12.75 -0.10 -14.90 16 26 H 0.06 0.63 7.51 -51.93 -0.39 0.24 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.71 8.00 -51.93 -0.42 0.29 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.74 7.77 -51.93 -0.40 0.33 16 33 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 34 H 0.40 7.27 8.32 -40.82 -0.34 6.94 16 35 H 0.13 3.31 6.27 -52.49 -0.33 2.99 16 36 H 0.28 6.36 8.29 -40.82 -0.34 6.02 16 37 H 0.10 2.35 8.06 -52.49 -0.42 1.92 16 38 H 0.12 2.67 8.06 -52.48 -0.42 2.24 16 LS Contribution 322.16 15.07 4.85 4.85 Total: -1.00 -32.97 322.16 -9.31 -42.28 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -5.22 Total: 9.83 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: -3.83 Total: 2.72 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: -0.16 Total: -59.32 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.08 Total: -13.50 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.03 Total: 13.14 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.97 -9.31 -42.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871732375.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.362 kcal (2) G-P(sol) polarization free energy of solvation -32.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds