Wall clock time and date at job start Mon Mar 30 2020 01:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 113.04720 * 2 1 4 4 C 1.53939 * 113.76909 * 228.23785 * 2 1 3 5 5 H 1.08999 * 113.74106 * 23.65653 * 4 2 1 6 6 C 1.53002 * 113.73981 * 154.85761 * 4 2 1 7 7 C 1.53947 * 86.29305 * 269.31125 * 4 2 1 8 8 N 1.47576 * 86.11275 * 336.38994 * 7 4 2 9 9 C 1.34779 * 134.49207 * 204.63259 * 8 7 4 10 10 O 1.21577 * 120.00306 * 180.02562 * 9 8 7 11 11 N 1.34783 * 119.99879 * 0.02562 * 9 8 7 12 12 C 1.39455 * 119.99767 * 174.97024 * 11 9 8 13 13 C 1.38644 * 119.64905 * 185.35466 * 12 11 9 14 14 C 1.40823 * 118.67810 * 179.97438 * 13 12 11 15 15 C 1.41540 * 120.99592 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00129 * 151.71697 * 15 14 13 17 17 C 1.40034 * 120.00175 * 331.70815 * 15 14 13 18 18 N 1.30742 * 119.99935 * 350.15770 * 17 15 14 19 19 Si 1.86797 * 119.99854 * 170.15936 * 17 15 14 20 20 H 1.48501 * 109.47427 * 90.00216 * 19 17 15 21 21 H 1.48508 * 109.46772 * 209.99928 * 19 17 15 22 22 H 1.48499 * 109.47065 * 329.99743 * 19 17 15 23 23 C 1.41158 * 118.00346 * 0.02562 * 14 13 12 24 24 C 1.36587 * 119.13022 * 359.97438 * 23 14 13 25 25 N 1.32071 * 121.25759 * 359.74369 * 24 23 14 26 26 H 1.08997 * 109.47739 * 191.75722 * 1 2 3 27 27 H 1.09001 * 109.47202 * 311.76137 * 1 2 3 28 28 H 1.09004 * 109.46753 * 71.75626 * 1 2 3 29 29 H 1.08997 * 109.47606 * 58.07720 * 6 4 2 30 30 H 1.09005 * 109.46904 * 178.08143 * 6 4 2 31 31 H 1.09000 * 109.46957 * 298.07198 * 6 4 2 32 32 H 1.08992 * 113.76933 * 90.69828 * 7 4 2 33 33 H 1.09002 * 113.76499 * 222.09360 * 7 4 2 34 34 H 0.96996 * 119.99802 * 354.97546 * 11 9 8 35 35 H 1.08000 * 120.66105 * 359.96735 * 13 12 11 36 36 H 0.96998 * 120.00153 * 180.02562 * 18 17 15 37 37 H 1.08000 * 120.43785 * 179.97438 * 23 14 13 38 38 H 1.08007 * 119.37621 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9567 1.0030 0.0000 4 6 2.1504 -0.9383 -1.0509 5 1 1.4909 -1.1525 -1.8918 6 6 3.5590 -0.5296 -1.4865 7 6 2.1272 -2.0185 0.0458 8 7 2.1248 -0.8993 1.0077 9 6 2.5106 -0.7561 2.2911 10 8 2.3856 0.3178 2.8472 11 7 3.0349 -1.8034 2.9581 12 6 3.5305 -1.6299 4.2500 13 6 4.1685 -2.6831 4.8871 14 6 4.6615 -2.4852 6.1912 15 6 5.3212 -3.5264 6.8869 16 1 6.0666 -3.2904 7.6319 17 6 5.0072 -4.8626 6.6094 18 7 3.9785 -5.1493 5.8552 19 14 6.0583 -6.2353 7.3167 20 1 5.5173 -6.6421 8.6385 21 1 6.0388 -7.3990 6.3944 22 1 7.4544 -5.7560 7.4795 23 6 4.4781 -1.2172 6.7838 24 6 3.8366 -0.2398 6.0776 25 7 3.3916 -0.4586 4.8535 26 1 -0.3634 -1.0060 0.2094 27 1 -0.3634 0.6845 0.7666 28 1 -0.3633 0.3217 -0.9761 29 1 4.2135 -0.4963 -0.6155 30 1 3.9432 -1.2565 -2.2022 31 1 3.5238 0.4552 -1.9524 32 1 1.2128 -2.6114 0.0591 33 1 3.0308 -2.6271 0.0821 34 1 3.0676 -2.6778 2.5394 35 1 4.2849 -3.6364 4.3931 36 1 3.7607 -6.0748 5.6633 37 1 4.8403 -1.0224 7.7824 38 1 3.6937 0.7318 6.5273 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871732375.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:01 Heat of formation + Delta-G solvation = 21.834490 kcal Electronic energy + Delta-G solvation = -20938.761832 eV Core-core repulsion = 17781.694534 eV Total energy + Delta-G solvation = -3157.067297 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.78563 -40.53022 -38.95321 -36.09212 -35.48196 -32.57776 -32.17687 -31.26057 -30.06241 -27.92989 -27.49973 -24.87084 -23.85809 -23.23366 -21.72102 -19.96589 -19.47569 -18.75853 -17.68300 -17.17639 -17.04910 -16.31103 -16.07746 -15.85157 -15.63344 -15.07923 -14.74835 -14.34975 -14.25957 -14.16773 -14.04128 -13.32542 -13.22912 -13.15876 -12.87179 -12.69247 -12.61963 -12.33351 -12.13526 -12.02387 -11.90512 -11.53277 -11.30864 -11.19023 -11.08146 -9.92171 -9.71870 -9.59031 -8.86225 -8.59314 -6.58999 0.80693 0.99304 1.41191 1.42702 1.53507 1.57619 2.20603 2.26237 2.80733 2.86063 3.33418 3.72611 3.81749 4.05373 4.12907 4.23384 4.33523 4.51045 4.57836 4.62360 4.76463 4.81817 4.87725 4.90563 4.95670 4.98607 5.07228 5.11790 5.14651 5.23009 5.29005 5.47659 5.47948 5.64137 5.91094 6.08358 6.28547 6.53585 6.78587 6.82362 6.96994 7.57388 7.89007 8.30044 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.024043 B = 0.004410 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.290833 B = 6347.289243 C = 7062.762532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.141 3.859 3 H 0.070 0.930 4 C -0.096 4.096 5 H 0.134 0.866 6 C -0.134 4.134 7 C 0.095 3.905 8 N -0.665 5.665 9 C 0.707 3.293 10 O -0.588 6.588 11 N -0.660 5.660 12 C 0.350 3.650 13 C -0.257 4.257 14 C 0.117 3.883 15 C -0.486 4.486 16 H 0.085 0.915 17 C 0.037 3.963 18 N -0.821 5.821 19 Si 0.991 3.009 20 H -0.263 1.263 21 H -0.264 1.264 22 H -0.258 1.258 23 C -0.294 4.294 24 C 0.112 3.888 25 N -0.580 5.580 26 H 0.064 0.936 27 H 0.039 0.961 28 H 0.107 0.893 29 H 0.027 0.973 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.415 0.585 35 H 0.125 0.875 36 H 0.291 0.709 37 H 0.118 0.882 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.463 -0.837 -15.755 16.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.039 3.961 3 H 0.089 0.911 4 C -0.114 4.114 5 H 0.151 0.849 6 C -0.191 4.191 7 C -0.027 4.027 8 N -0.406 5.406 9 C 0.410 3.590 10 O -0.463 6.463 11 N -0.308 5.308 12 C 0.123 3.877 13 C -0.283 4.283 14 C 0.109 3.891 15 C -0.517 4.517 16 H 0.103 0.897 17 C -0.179 4.179 18 N -0.447 5.447 19 Si 0.811 3.189 20 H -0.188 1.188 21 H -0.188 1.188 22 H -0.182 1.182 23 C -0.318 4.318 24 C -0.041 4.041 25 N -0.300 5.300 26 H 0.083 0.917 27 H 0.058 0.942 28 H 0.125 0.875 29 H 0.046 0.954 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.122 0.878 33 H 0.103 0.897 34 H 0.252 0.748 35 H 0.143 0.857 36 H 0.102 0.898 37 H 0.136 0.864 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.074 0.504 -15.777 16.303 hybrid contribution 0.704 -1.467 1.164 2.001 sum -3.370 -0.963 -14.613 15.028 Atomic orbital electron populations 1.21942 0.92576 1.02521 1.03605 1.22940 0.94832 0.95501 0.82872 0.91137 1.22947 0.98551 0.93584 0.96362 0.84872 1.21576 0.94208 1.02647 1.00660 1.23608 1.03358 0.91329 0.84409 1.49625 1.65538 1.17471 1.07999 1.15917 0.78744 0.83836 0.80522 1.90943 1.60757 1.27338 1.67289 1.42426 1.62769 1.12062 1.13525 1.18225 0.93565 0.90933 0.84980 1.21515 1.11033 0.98682 0.97041 1.18005 0.88227 0.92421 0.90468 1.19869 1.20722 0.90996 1.20097 0.89688 1.26837 0.95083 1.02249 0.93716 1.69800 1.22697 1.22414 1.29771 0.85070 0.78926 0.76131 0.78768 1.18787 1.18782 1.18164 1.21895 1.11529 0.96558 1.01794 1.21945 0.94101 0.98617 0.89474 1.67341 1.28028 1.22301 1.12353 0.91694 0.94220 0.87482 0.95405 0.89889 0.91182 0.87824 0.89746 0.74789 0.85739 0.89794 0.86359 0.83483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.83 71.98 0.71 -2.06 16 2 C 0.14 3.23 4.59 45.09 0.21 3.44 16 3 H 0.07 1.84 8.10 -2.39 -0.02 1.82 16 4 C -0.10 -1.42 4.19 -10.14 -0.04 -1.46 16 5 H 0.13 1.01 8.10 -2.39 -0.02 0.99 16 6 C -0.13 -2.11 9.64 71.98 0.69 -1.42 16 7 C 0.09 1.79 7.63 86.48 0.66 2.45 16 8 N -0.67 -20.22 3.28 -830.86 -2.72 -22.94 16 9 C 0.71 30.69 8.72 179.05 1.56 32.25 16 10 O -0.59 -31.35 15.33 -3.96 -0.06 -31.41 16 11 N -0.66 -28.93 5.39 -322.36 -1.74 -30.67 16 12 C 0.35 18.47 7.42 132.76 0.99 19.46 16 13 C -0.26 -13.84 8.60 23.00 0.20 -13.64 16 14 C 0.12 6.47 5.58 -21.12 -0.12 6.35 16 15 C -0.49 -25.68 9.13 23.52 0.21 -25.46 16 16 H 0.09 4.27 7.87 -2.91 -0.02 4.25 16 17 C 0.04 1.80 5.30 85.29 0.45 2.25 16 18 N -0.82 -41.06 10.83 21.84 0.24 -40.82 16 19 Si 0.99 36.37 29.57 68.60 2.03 38.40 16 20 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 21 H -0.26 -9.08 7.11 99.48 0.71 -8.37 16 22 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 23 C -0.29 -15.17 9.85 22.60 0.22 -14.95 16 24 C 0.11 5.73 11.10 84.27 0.94 6.66 16 25 N -0.58 -32.24 7.86 -194.27 -1.53 -33.77 16 26 H 0.06 1.17 7.51 -2.39 -0.02 1.15 16 27 H 0.04 0.93 8.14 -2.39 -0.02 0.92 16 28 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.03 0.62 8.00 -2.39 -0.02 0.60 16 30 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.10 1.54 7.77 -2.39 -0.02 1.52 16 33 H 0.08 1.52 8.10 -2.39 -0.02 1.50 16 34 H 0.42 15.27 8.32 -92.71 -0.77 14.50 16 35 H 0.12 6.64 6.27 -2.91 -0.02 6.62 16 36 H 0.29 12.99 8.29 -92.71 -0.77 12.22 16 37 H 0.12 5.52 8.06 -2.91 -0.02 5.50 16 38 H 0.15 6.53 8.06 -2.91 -0.02 6.51 16 Total: -1.00 -74.99 322.16 3.20 -71.79 By element: Atomic # 1 Polarization: 35.24 SS G_CDS: 0.30 Total: 35.54 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: 6.68 Total: 13.88 kcal Atomic # 7 Polarization: -122.45 SS G_CDS: -5.75 Total: -128.20 kcal Atomic # 8 Polarization: -31.35 SS G_CDS: -0.06 Total: -31.41 kcal Atomic # 14 Polarization: 36.37 SS G_CDS: 2.03 Total: 38.40 kcal Total: -74.99 3.20 -71.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871732375.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.629 kcal (2) G-P(sol) polarization free energy of solvation -74.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds