Wall clock time and date at job start Mon Mar 30 2020 01:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 115.56274 * 2 1 4 4 C 1.52999 * 117.49967 * 214.30902 * 2 1 3 5 5 C 1.52998 * 60.00032 * 252.50996 * 4 2 1 6 6 H 1.09004 * 117.49651 * 107.51404 * 5 4 2 7 7 C 1.52996 * 117.50188 * 252.50687 * 5 4 2 8 8 N 1.46498 * 109.47811 * 243.61123 * 7 5 4 9 9 C 1.34775 * 120.00310 * 179.97438 * 8 7 5 10 10 O 1.21569 * 120.00168 * 359.73237 * 9 8 7 11 11 N 1.34783 * 119.99754 * 179.72453 * 9 8 7 12 12 C 1.39239 * 119.99706 * 174.86360 * 11 9 8 13 13 C 1.39688 * 119.57686 * 185.40470 * 12 11 9 14 14 C 1.38648 * 119.49432 * 179.70561 * 13 12 11 15 15 C 1.38345 * 118.67391 * 0.55266 * 14 13 12 16 16 C 1.40573 * 119.12920 * 359.73492 * 15 14 13 17 17 C 1.41337 * 119.78540 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00450 * 359.97438 * 17 16 15 19 19 C 1.40032 * 119.99806 * 179.97438 * 17 16 15 20 20 N 1.30744 * 120.00127 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99855 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47068 * 60.00047 * 21 19 17 23 23 H 1.48496 * 109.47388 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47257 * 300.00416 * 21 19 17 25 25 N 1.31910 * 119.57860 * 5.67411 * 12 11 9 26 26 H 1.09009 * 109.47023 * 274.31252 * 1 2 3 27 27 H 1.08993 * 109.47280 * 34.31131 * 1 2 3 28 28 H 1.08996 * 109.47191 * 154.31262 * 1 2 3 29 29 H 1.08998 * 117.50195 * 145.02035 * 4 2 1 30 30 H 1.08998 * 117.51445 * 359.97438 * 4 2 1 31 31 H 1.08999 * 109.47176 * 123.60837 * 7 5 4 32 32 H 1.09005 * 109.47100 * 3.61308 * 7 5 4 33 33 H 0.97005 * 119.99441 * 359.72587 * 8 7 5 34 34 H 0.96997 * 119.99823 * 354.85683 * 11 9 8 35 35 H 1.07995 * 120.24841 * 0.02562 * 13 12 11 36 36 H 1.07998 * 120.66047 * 180.31172 * 14 13 12 37 37 H 1.07994 * 120.43633 * 179.75298 * 15 14 13 38 38 H 0.96995 * 120.00100 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 -0.7649 5 6 2.2364 -1.1209 0.7650 6 1 1.6115 -1.8587 1.2683 7 6 3.5489 -0.7759 1.4715 8 7 4.0083 -1.9344 2.2416 9 6 5.1525 -1.8619 2.9502 10 8 5.8060 -0.8367 2.9463 11 7 5.5722 -2.9259 3.6631 12 6 6.8057 -2.8891 4.3080 13 6 7.2830 -4.0347 4.9492 14 6 8.5143 -3.9979 5.5855 15 6 9.2317 -2.8151 5.5752 16 6 8.6946 -1.6946 4.9179 17 6 9.4155 -0.4791 4.8992 18 1 10.3756 -0.4130 5.3892 19 6 8.8848 0.6397 4.2452 20 7 7.7222 0.5600 3.6524 21 14 9.8380 2.2460 4.2199 22 1 11.1502 2.0326 3.5582 23 1 9.0652 3.2684 3.4697 24 1 10.0561 2.7142 5.6122 25 7 7.5062 -1.7714 4.3102 26 1 -0.3633 0.0773 1.0248 27 1 -0.3633 0.8488 -0.5792 28 1 -0.3633 -0.9261 -0.4454 29 1 3.1715 -0.8752 -1.2682 30 1 1.6115 -1.8589 -1.2679 31 1 3.3890 0.0670 2.1438 32 1 4.3022 -0.5110 0.7295 33 1 3.4871 -2.7525 2.2444 34 1 5.0149 -3.7173 3.7270 35 1 6.6997 -4.9436 4.9447 36 1 8.9037 -4.8740 6.0827 37 1 10.1920 -2.7534 6.0654 38 1 7.3548 1.3348 3.1991 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881152072.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:34 Heat of formation + Delta-G solvation = 51.502896 kcal Electronic energy + Delta-G solvation = -20719.915644 eV Core-core repulsion = 17564.134866 eV Total energy + Delta-G solvation = -3155.780779 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.46841 -38.28184 -37.40292 -34.17707 -33.52018 -32.91752 -30.24183 -29.45468 -28.62054 -26.17888 -25.26685 -22.07122 -21.30727 -21.00144 -20.67029 -19.57729 -17.93139 -17.11916 -16.24088 -15.49997 -14.85078 -14.63006 -14.46655 -14.35115 -13.96757 -13.62550 -13.30467 -13.01730 -12.98685 -12.74754 -12.35327 -11.94193 -11.85433 -11.54240 -11.33810 -11.09193 -10.91699 -10.60715 -10.40558 -10.17559 -10.02838 -9.89179 -9.60764 -9.04714 -8.96131 -8.37204 -7.89506 -7.14932 -6.87980 -6.04866 -4.33520 2.90663 3.18822 3.20503 3.22421 3.24871 3.32757 3.66188 4.11783 4.29449 4.50122 4.71067 4.72982 4.96217 5.01563 5.12110 5.26436 5.48215 5.57271 5.65589 5.81706 5.83650 5.99374 6.09124 6.11561 6.14840 6.24256 6.53405 6.67314 6.86126 6.90533 7.06317 7.29856 7.43394 7.68013 7.80907 7.87170 8.23183 8.35878 8.73316 8.86651 9.12043 9.66915 10.33534 10.55981 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.016836 B = 0.004936 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.655894 B = 5670.950226 C = 7188.109954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.148 4.148 3 H 0.107 0.893 4 C -0.174 4.174 5 C -0.160 4.160 6 H 0.107 0.893 7 C 0.176 3.824 8 N -0.758 5.758 9 C 0.662 3.338 10 O -0.464 6.464 11 N -0.674 5.674 12 C 0.387 3.613 13 C -0.359 4.359 14 C -0.036 4.036 15 C -0.308 4.308 16 C 0.271 3.729 17 C -0.426 4.426 18 H 0.081 0.919 19 C 0.056 3.944 20 N -0.649 5.649 21 Si 0.894 3.106 22 H -0.267 1.267 23 H -0.280 1.280 24 H -0.267 1.267 25 N -0.472 5.472 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.384 0.616 34 H 0.394 0.606 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.666 -2.633 -6.723 14.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.167 4.167 3 H 0.125 0.875 4 C -0.211 4.211 5 C -0.179 4.179 6 H 0.125 0.875 7 C 0.052 3.948 8 N -0.418 5.418 9 C 0.361 3.639 10 O -0.328 6.328 11 N -0.322 5.322 12 C 0.148 3.852 13 C -0.385 4.385 14 C -0.060 4.060 15 C -0.331 4.331 16 C 0.146 3.854 17 C -0.457 4.457 18 H 0.099 0.901 19 C -0.173 4.173 20 N -0.267 5.267 21 Si 0.719 3.281 22 H -0.192 1.192 23 H -0.205 1.205 24 H -0.192 1.192 25 N -0.190 5.190 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.115 0.885 30 H 0.111 0.889 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.216 0.784 34 H 0.227 0.773 35 H 0.108 0.892 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.511 -0.683 -7.323 14.512 hybrid contribution 0.125 -1.015 0.424 1.107 sum -12.385 -1.698 -6.899 14.278 Atomic orbital electron populations 1.21360 0.92835 1.01800 1.01900 1.22375 0.95154 0.94878 1.04307 0.87526 1.23245 1.02696 1.01220 0.93926 1.22587 0.98840 1.02383 0.94076 0.87522 1.20527 0.92171 0.88141 0.93996 1.45259 1.26091 1.16436 1.54060 1.16439 0.81723 0.85324 0.80454 1.91383 1.52577 1.26607 1.62184 1.42561 1.19617 1.17400 1.52640 1.18349 0.85233 0.91245 0.90417 1.20436 1.01874 0.97793 1.18399 1.20539 0.93459 0.96239 0.95787 1.21612 1.02599 0.95470 1.13412 1.18387 0.87785 0.91987 0.87221 1.19539 1.03790 0.93570 1.28769 0.90052 1.26193 0.95352 1.00148 0.95605 1.70341 1.11533 1.28767 1.16062 0.86611 0.80495 0.81880 0.79128 1.19222 1.20459 1.19219 1.68701 1.07265 1.20509 1.22572 0.92145 0.92162 0.92662 0.88548 0.88914 0.91680 0.91870 0.78395 0.77289 0.89193 0.88661 0.88623 0.91613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.94 10.19 37.16 0.38 -0.56 16 2 C -0.15 -1.39 6.13 -90.62 -0.56 -1.94 16 3 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 4 C -0.17 -1.63 9.82 -26.73 -0.26 -1.90 16 5 C -0.16 -1.66 5.57 -90.62 -0.50 -2.16 16 6 H 0.11 1.00 8.04 -51.93 -0.42 0.58 16 7 C 0.18 2.50 5.96 -4.05 -0.02 2.47 16 8 N -0.76 -11.64 5.56 -65.23 -0.36 -12.01 16 9 C 0.66 14.05 8.52 -86.91 -0.74 13.31 16 10 O -0.46 -12.20 12.11 5.30 0.06 -12.14 16 11 N -0.67 -13.80 5.39 -15.79 -0.09 -13.89 16 12 C 0.39 9.75 7.43 -155.00 -1.15 8.60 16 13 C -0.36 -8.27 9.96 -38.89 -0.39 -8.66 16 14 C -0.04 -0.84 10.15 -39.39 -0.40 -1.24 16 15 C -0.31 -7.94 9.83 -38.66 -0.38 -8.32 16 16 C 0.27 7.83 6.55 -85.00 -0.56 7.27 16 17 C -0.43 -12.01 9.14 -37.73 -0.34 -12.36 16 18 H 0.08 2.14 7.85 -52.49 -0.41 1.72 16 19 C 0.06 1.53 5.50 -17.34 -0.10 1.43 16 20 N -0.65 -18.51 8.99 55.55 0.50 -18.01 16 21 Si 0.89 19.68 29.56 -169.99 -5.02 14.65 16 22 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 23 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 24 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 25 N -0.47 -13.67 5.74 -10.26 -0.06 -13.73 16 26 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.39 7.90 -51.93 -0.41 -0.02 16 29 H 0.10 0.96 8.03 -51.93 -0.42 0.54 16 30 H 0.09 0.76 8.05 -51.93 -0.42 0.34 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.06 0.99 7.88 -51.93 -0.41 0.58 16 33 H 0.38 4.55 8.42 -40.82 -0.34 4.20 16 34 H 0.39 6.20 8.71 -40.82 -0.36 5.84 16 35 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 36 H 0.10 1.88 8.06 -52.49 -0.42 1.45 16 37 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 38 H 0.27 7.32 8.29 -40.82 -0.34 6.98 16 LS Contribution 323.29 15.07 4.87 4.87 Total: -1.00 -33.64 323.29 -10.40 -44.04 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -5.28 Total: 10.25 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -5.02 Total: -4.05 kcal Atomic # 7 Polarization: -57.62 SS G_CDS: -0.01 Total: -57.63 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.06 Total: -12.14 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.64 -10.40 -44.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881152072.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.543 kcal (2) G-P(sol) polarization free energy of solvation -33.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds