Wall clock time and date at job start Mon Mar 30 2020 01:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 115.56274 * 2 1 4 4 C 1.52999 * 117.49967 * 214.30902 * 2 1 3 5 5 C 1.52998 * 60.00032 * 252.50996 * 4 2 1 6 6 H 1.09004 * 117.49651 * 107.51404 * 5 4 2 7 7 C 1.52996 * 117.50188 * 252.50687 * 5 4 2 8 8 N 1.46498 * 109.47811 * 243.61123 * 7 5 4 9 9 C 1.34775 * 120.00310 * 179.97438 * 8 7 5 10 10 O 1.21569 * 120.00168 * 359.73237 * 9 8 7 11 11 N 1.34783 * 119.99754 * 179.72453 * 9 8 7 12 12 C 1.39239 * 119.99706 * 174.86360 * 11 9 8 13 13 C 1.39688 * 119.57686 * 185.40470 * 12 11 9 14 14 C 1.38648 * 119.49432 * 179.70561 * 13 12 11 15 15 C 1.38345 * 118.67391 * 0.55266 * 14 13 12 16 16 C 1.40573 * 119.12920 * 359.73492 * 15 14 13 17 17 C 1.41337 * 119.78540 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00450 * 359.97438 * 17 16 15 19 19 C 1.40032 * 119.99806 * 179.97438 * 17 16 15 20 20 N 1.30744 * 120.00127 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99855 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47068 * 60.00047 * 21 19 17 23 23 H 1.48496 * 109.47388 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47257 * 300.00416 * 21 19 17 25 25 N 1.31910 * 119.57860 * 5.67411 * 12 11 9 26 26 H 1.09009 * 109.47023 * 274.31252 * 1 2 3 27 27 H 1.08993 * 109.47280 * 34.31131 * 1 2 3 28 28 H 1.08996 * 109.47191 * 154.31262 * 1 2 3 29 29 H 1.08998 * 117.50195 * 145.02035 * 4 2 1 30 30 H 1.08998 * 117.51445 * 359.97438 * 4 2 1 31 31 H 1.08999 * 109.47176 * 123.60837 * 7 5 4 32 32 H 1.09005 * 109.47100 * 3.61308 * 7 5 4 33 33 H 0.97005 * 119.99441 * 359.72587 * 8 7 5 34 34 H 0.96997 * 119.99823 * 354.85683 * 11 9 8 35 35 H 1.07995 * 120.24841 * 0.02562 * 13 12 11 36 36 H 1.07998 * 120.66047 * 180.31172 * 14 13 12 37 37 H 1.07994 * 120.43633 * 179.75298 * 15 14 13 38 38 H 0.96995 * 120.00100 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 -0.7649 5 6 2.2364 -1.1209 0.7650 6 1 1.6115 -1.8587 1.2683 7 6 3.5489 -0.7759 1.4715 8 7 4.0083 -1.9344 2.2416 9 6 5.1525 -1.8619 2.9502 10 8 5.8060 -0.8367 2.9463 11 7 5.5722 -2.9259 3.6631 12 6 6.8057 -2.8891 4.3080 13 6 7.2830 -4.0347 4.9492 14 6 8.5143 -3.9979 5.5855 15 6 9.2317 -2.8151 5.5752 16 6 8.6946 -1.6946 4.9179 17 6 9.4155 -0.4791 4.8992 18 1 10.3756 -0.4130 5.3892 19 6 8.8848 0.6397 4.2452 20 7 7.7222 0.5600 3.6524 21 14 9.8380 2.2460 4.2199 22 1 11.1502 2.0326 3.5582 23 1 9.0652 3.2684 3.4697 24 1 10.0561 2.7142 5.6122 25 7 7.5062 -1.7714 4.3102 26 1 -0.3633 0.0773 1.0248 27 1 -0.3633 0.8488 -0.5792 28 1 -0.3633 -0.9261 -0.4454 29 1 3.1715 -0.8752 -1.2682 30 1 1.6115 -1.8589 -1.2679 31 1 3.3890 0.0670 2.1438 32 1 4.3022 -0.5110 0.7295 33 1 3.4871 -2.7525 2.2444 34 1 5.0149 -3.7173 3.7270 35 1 6.6997 -4.9436 4.9447 36 1 8.9037 -4.8740 6.0827 37 1 10.1920 -2.7534 6.0654 38 1 7.3548 1.3348 3.1991 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881152072.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:33 Heat of formation + Delta-G solvation = 30.131248 kcal Electronic energy + Delta-G solvation = -20720.842389 eV Core-core repulsion = 17564.134866 eV Total energy + Delta-G solvation = -3156.707523 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.12976 -39.67508 -38.78080 -35.95607 -35.03187 -34.81429 -32.19318 -31.04947 -29.73805 -27.65988 -26.89808 -23.82103 -23.05936 -22.08800 -21.72616 -21.04917 -19.72958 -18.71579 -18.05637 -16.82637 -16.45083 -16.25931 -16.09686 -15.65955 -15.48482 -15.14391 -14.65091 -14.55467 -14.34535 -13.93522 -13.71450 -13.64933 -13.03915 -12.85670 -12.71899 -12.55581 -12.31493 -12.29460 -12.21488 -11.77995 -11.50612 -11.01535 -10.96323 -10.84000 -10.68489 -9.90302 -9.78845 -9.09514 -8.76849 -8.00598 -6.40002 0.98589 1.30100 1.39430 1.51449 1.54627 1.80604 2.27625 2.56989 2.81520 3.05527 3.39166 3.72427 3.92336 4.03734 4.09086 4.28363 4.37412 4.46492 4.62108 4.75050 4.80001 4.87685 4.94147 4.96936 4.98323 4.99194 5.08273 5.21618 5.24787 5.29915 5.45272 5.67931 5.72821 5.87823 5.93818 6.05417 6.33600 6.44063 6.83718 7.08884 7.28551 8.02750 8.40034 8.60030 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.016836 B = 0.004936 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.655894 B = 5670.950226 C = 7188.109954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.146 4.146 3 H 0.097 0.903 4 C -0.167 4.167 5 C -0.162 4.162 6 H 0.126 0.874 7 C 0.179 3.821 8 N -0.733 5.733 9 C 0.655 3.345 10 O -0.518 6.518 11 N -0.661 5.661 12 C 0.364 3.636 13 C -0.345 4.345 14 C -0.034 4.034 15 C -0.331 4.331 16 C 0.237 3.763 17 C -0.468 4.468 18 H 0.086 0.914 19 C 0.009 3.991 20 N -0.687 5.687 21 Si 0.974 3.026 22 H -0.260 1.260 23 H -0.275 1.275 24 H -0.259 1.259 25 N -0.509 5.509 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.113 0.887 31 H 0.045 0.955 32 H 0.042 0.958 33 H 0.406 0.594 34 H 0.418 0.582 35 H 0.133 0.867 36 H 0.139 0.861 37 H 0.105 0.895 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.054 -4.134 -7.015 16.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.165 4.165 3 H 0.115 0.885 4 C -0.204 4.204 5 C -0.180 4.180 6 H 0.144 0.856 7 C 0.055 3.945 8 N -0.394 5.394 9 C 0.353 3.647 10 O -0.386 6.386 11 N -0.312 5.312 12 C 0.124 3.876 13 C -0.371 4.371 14 C -0.058 4.058 15 C -0.354 4.354 16 C 0.111 3.889 17 C -0.499 4.499 18 H 0.104 0.896 19 C -0.216 4.216 20 N -0.306 5.306 21 Si 0.795 3.205 22 H -0.184 1.184 23 H -0.200 1.200 24 H -0.184 1.184 25 N -0.228 5.228 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.105 0.895 30 H 0.131 0.869 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.242 0.758 34 H 0.255 0.745 35 H 0.151 0.849 36 H 0.156 0.844 37 H 0.123 0.877 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.968 -2.262 -7.625 16.074 hybrid contribution 0.470 -0.737 0.522 1.018 sum -13.498 -2.999 -7.103 15.545 Atomic orbital electron populations 1.21368 0.91128 1.02807 1.02297 1.22474 0.96406 0.94283 1.03360 0.88453 1.23302 1.02624 1.01565 0.92936 1.22446 0.97096 1.03836 0.94621 0.85595 1.20510 0.93684 0.87236 0.93082 1.44967 1.24333 1.17706 1.52409 1.16761 0.82589 0.84740 0.80620 1.91375 1.54618 1.28653 1.63961 1.42386 1.18641 1.18278 1.51871 1.18864 0.86426 0.91334 0.90966 1.20923 1.01822 0.98404 1.15937 1.21034 0.93130 0.96671 0.94961 1.21806 1.03578 0.95979 1.14066 1.18889 0.88485 0.93389 0.88136 1.19885 1.04595 0.94722 1.30689 0.89574 1.27064 0.96243 1.03626 0.94678 1.70563 1.13306 1.29464 1.17228 0.85406 0.78891 0.76842 0.79396 1.18419 1.19990 1.18358 1.68656 1.07891 1.22744 1.23532 0.92017 0.91372 0.91509 0.89535 0.86875 0.93662 0.93986 0.75837 0.74508 0.84931 0.84365 0.87716 0.92110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.54 10.19 71.98 0.73 -0.81 16 2 C -0.15 -2.53 6.13 -10.80 -0.07 -2.60 16 3 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 4 C -0.17 -2.85 9.82 30.59 0.30 -2.55 16 5 C -0.16 -3.11 5.57 -10.80 -0.06 -3.17 16 6 H 0.13 1.98 8.04 -2.38 -0.02 1.96 16 7 C 0.18 5.15 5.96 86.38 0.51 5.67 16 8 N -0.73 -22.12 5.56 -478.56 -2.66 -24.78 16 9 C 0.65 28.09 8.52 179.05 1.53 29.62 16 10 O -0.52 -28.49 12.11 -3.93 -0.05 -28.54 16 11 N -0.66 -26.54 5.39 -322.12 -1.74 -28.28 16 12 C 0.36 18.22 7.43 133.26 0.99 19.21 16 13 C -0.35 -15.04 9.96 22.72 0.23 -14.82 16 14 C -0.03 -1.50 10.15 22.39 0.23 -1.27 16 15 C -0.33 -17.15 9.83 22.87 0.22 -16.93 16 16 C 0.24 14.09 6.55 40.19 0.26 14.36 16 17 C -0.47 -27.47 9.14 23.47 0.21 -27.25 16 18 H 0.09 4.71 7.85 -2.91 -0.02 4.68 16 19 C 0.01 0.53 5.50 85.29 0.47 1.00 16 20 N -0.69 -41.18 8.99 21.84 0.20 -40.98 16 21 Si 0.97 41.93 29.56 68.60 2.03 43.96 16 22 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 23 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 24 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 25 N -0.51 -30.35 5.74 -186.36 -1.07 -31.42 16 26 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 27 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.07 0.73 7.90 -2.39 -0.02 0.71 16 29 H 0.09 1.66 8.03 -2.39 -0.02 1.64 16 30 H 0.11 1.50 8.05 -2.39 -0.02 1.48 16 31 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.04 1.38 7.88 -2.38 -0.02 1.37 16 33 H 0.41 8.74 8.42 -92.70 -0.78 7.96 16 34 H 0.42 12.13 8.71 -92.71 -0.81 11.33 16 35 H 0.13 4.58 8.06 -2.91 -0.02 4.56 16 36 H 0.14 4.87 8.06 -2.91 -0.02 4.85 16 37 H 0.10 5.04 8.06 -2.91 -0.02 5.02 16 38 H 0.27 15.26 8.29 -92.71 -0.77 14.49 16 Total: -1.00 -77.25 323.29 1.77 -75.48 By element: Atomic # 1 Polarization: 34.61 SS G_CDS: -0.50 Total: 34.11 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: 5.56 Total: 0.46 kcal Atomic # 7 Polarization: -120.19 SS G_CDS: -5.27 Total: -125.46 kcal Atomic # 8 Polarization: -28.49 SS G_CDS: -0.05 Total: -28.54 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -77.25 1.77 -75.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881152072.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.609 kcal (2) G-P(sol) polarization free energy of solvation -77.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds