Wall clock time and date at job start Mon Mar 30 2020 01:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08996 * 110.78293 * 2 1 4 4 C 1.55153 * 110.72118 * 236.75555 * 2 1 3 5 5 C 1.55132 * 101.48572 * 205.97116 * 4 2 1 6 6 N 1.47427 * 104.72077 * 37.29548 * 5 4 2 7 7 C 1.34781 * 125.64381 * 155.82175 * 6 5 4 8 8 O 1.21579 * 119.99742 * 179.69399 * 7 6 5 9 9 N 1.34771 * 120.00669 * 359.68364 * 7 6 5 10 10 C 1.39239 * 120.00783 * 185.17102 * 9 7 6 11 11 C 1.39680 * 119.58021 * 174.69407 * 10 9 7 12 12 C 1.38653 * 119.49614 * 179.97438 * 11 10 9 13 13 C 1.38350 * 118.66929 * 359.97438 * 12 11 10 14 14 C 1.40565 * 119.13395 * 0.02562 * 13 12 11 15 15 C 1.41339 * 119.78965 * 179.97438 * 14 13 12 16 16 H 1.07996 * 119.99693 * 359.97438 * 15 14 13 17 17 C 1.40029 * 119.99941 * 179.72726 * 15 14 13 18 18 N 1.30736 * 120.00070 * 0.26698 * 17 15 14 19 19 Si 1.86794 * 119.99748 * 180.27755 * 17 15 14 20 20 H 1.48504 * 109.47212 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47600 * 119.99579 * 19 17 15 22 22 H 1.48503 * 109.47124 * 239.99829 * 19 17 15 23 23 N 1.31908 * 119.57248 * 354.92938 * 10 9 7 24 24 C 1.47013 * 108.70577 * 335.55092 * 6 5 4 25 25 H 1.09006 * 109.47636 * 298.22193 * 1 2 3 26 26 H 1.09002 * 109.46986 * 58.21601 * 1 2 3 27 27 H 1.09000 * 109.47506 * 178.22212 * 1 2 3 28 28 H 1.08994 * 111.00418 * 324.20733 * 4 2 1 29 29 H 1.08997 * 111.00564 * 88.06559 * 4 2 1 30 30 H 1.09003 * 110.49995 * 278.45478 * 5 4 2 31 31 H 1.08996 * 110.34443 * 156.05935 * 5 4 2 32 32 H 0.97004 * 119.99598 * 5.17723 * 9 7 6 33 33 H 1.07998 * 120.25335 * 359.97438 * 11 10 9 34 34 H 1.08001 * 120.66083 * 179.97438 * 12 11 10 35 35 H 1.08002 * 120.42957 * 180.02562 * 13 12 11 36 36 H 0.97006 * 120.00244 * 180.02562 * 18 17 15 37 37 H 1.09002 * 109.88556 * 120.70348 * 24 6 5 38 38 H 1.08997 * 109.88806 * 241.87315 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9167 1.0190 0.0000 4 6 2.0789 -0.7955 -1.2137 5 6 3.4665 -1.2456 -0.6859 6 7 3.2443 -1.5507 0.7393 7 6 3.9922 -2.3835 1.4901 8 8 3.7186 -2.5563 2.6620 9 7 5.0431 -3.0248 0.9418 10 6 5.7500 -3.9658 1.6858 11 6 6.7660 -4.7052 1.0758 12 6 7.4692 -5.6414 1.8185 13 6 7.1399 -5.8146 3.1510 14 6 6.1073 -5.0398 3.7071 15 6 5.7592 -5.2058 5.0669 16 1 6.2858 -5.9264 5.6749 17 6 4.7351 -4.4322 5.6268 18 7 4.0974 -3.5602 4.8906 19 14 4.2802 -4.6462 7.4259 20 1 5.1449 -5.6890 8.0345 21 1 4.4760 -3.3603 8.1424 22 1 2.8579 -5.0599 7.5311 23 7 5.4485 -4.1509 2.9566 24 6 2.0759 -0.7911 1.2074 25 1 -0.3634 0.4860 0.9055 26 1 -0.3633 0.5413 -0.8736 27 1 -0.3634 -1.0271 -0.0319 28 1 1.4452 -1.6537 -1.4373 29 1 2.1850 -0.1520 -2.0870 30 1 4.1947 -0.4416 -0.7927 31 1 3.8031 -2.1363 -1.2165 32 1 5.3072 -2.8307 0.0288 33 1 7.0021 -4.5488 0.0336 34 1 8.2580 -6.2237 1.3657 35 1 7.6695 -6.5357 3.7560 36 1 3.3881 -3.0240 5.2786 37 1 1.3128 -1.4756 1.5778 38 1 2.3739 -0.1022 1.9978 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881153077.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:40 Heat of formation + Delta-G solvation = 33.636519 kcal Electronic energy + Delta-G solvation = -21363.892418 eV Core-core repulsion = 18207.336895 eV Total energy + Delta-G solvation = -3156.555523 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.80156 -38.27942 -36.85071 -34.02495 -33.01717 -32.46876 -30.23826 -29.45807 -28.93279 -26.30187 -25.32132 -23.08318 -21.69034 -21.13910 -20.19841 -19.03969 -18.00463 -16.95033 -16.34607 -15.80604 -14.67856 -14.43776 -14.39122 -14.24242 -13.71281 -13.60711 -13.33285 -12.90165 -12.78496 -12.55698 -12.25245 -11.99372 -11.83168 -11.69124 -11.12681 -11.05080 -10.89068 -10.82154 -10.69904 -10.58144 -10.41389 -9.85715 -9.64594 -9.05374 -8.97533 -8.06552 -7.89432 -7.15783 -6.88496 -6.05457 -4.33801 2.88467 3.16147 3.18600 3.21502 3.25085 3.31589 4.11651 4.22616 4.41420 4.54637 4.70037 4.78136 5.01111 5.24990 5.32782 5.35690 5.51359 5.65731 5.68734 5.82883 5.95215 6.01017 6.07256 6.12002 6.14617 6.27545 6.46832 6.56925 6.84153 6.89577 6.91107 7.28187 7.48156 7.67632 7.81517 7.86545 8.22460 8.34207 8.70710 8.84745 9.11736 9.64280 10.32836 10.55544 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.017670 B = 0.005943 C = 0.004510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.236395 B = 4710.413099 C = 6207.080698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.106 4.106 3 H 0.081 0.919 4 C -0.126 4.126 5 C 0.098 3.902 6 N -0.648 5.648 7 C 0.682 3.318 8 O -0.459 6.459 9 N -0.671 5.671 10 C 0.387 3.613 11 C -0.358 4.358 12 C -0.035 4.035 13 C -0.307 4.307 14 C 0.271 3.729 15 C -0.426 4.426 16 H 0.082 0.918 17 C 0.056 3.944 18 N -0.648 5.648 19 Si 0.894 3.106 20 H -0.262 1.262 21 H -0.276 1.276 22 H -0.276 1.276 23 N -0.472 5.472 24 C 0.136 3.864 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.394 0.606 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.271 0.729 37 H 0.063 0.937 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.576 7.552 -10.872 14.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.125 4.125 3 H 0.100 0.900 4 C -0.165 4.165 5 C -0.025 4.025 6 N -0.392 5.392 7 C 0.382 3.618 8 O -0.322 6.322 9 N -0.319 5.319 10 C 0.147 3.853 11 C -0.384 4.384 12 C -0.060 4.060 13 C -0.330 4.330 14 C 0.146 3.854 15 C -0.456 4.456 16 H 0.101 0.899 17 C -0.173 4.173 18 N -0.267 5.267 19 Si 0.719 3.281 20 H -0.186 1.186 21 H -0.201 1.201 22 H -0.201 1.201 23 N -0.191 5.191 24 C 0.013 3.987 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.227 0.773 33 H 0.108 0.892 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.635 8.007 -9.444 14.048 hybrid contribution 0.687 -0.411 -0.307 0.857 sum -5.948 7.596 -9.751 13.717 Atomic orbital electron populations 1.21736 0.94036 1.02212 1.01820 1.22229 0.96139 0.99247 0.94847 0.90026 1.22862 0.96034 1.00166 0.97389 1.22224 0.97266 0.99949 0.83110 1.47849 1.32315 1.48812 1.10203 1.15987 0.80613 0.79797 0.85383 1.91389 1.68222 1.61535 1.11069 1.42578 1.31198 1.42117 1.16054 1.18356 0.88680 0.87572 0.90697 1.20423 1.08265 1.10239 0.99511 1.20536 0.96295 0.95202 0.93931 1.21615 1.06749 1.08892 0.95765 1.18400 0.87211 0.86783 0.92998 1.19611 1.14487 1.17773 0.93744 0.89942 1.26201 0.96610 0.95455 0.99075 1.70357 1.11832 1.10559 1.33945 0.86487 0.79003 0.78972 0.83664 1.18616 1.20121 1.20122 1.68700 1.28422 1.20834 1.01107 1.21667 0.87367 0.93976 0.95731 0.92312 0.92441 0.92306 0.90609 0.90388 0.92193 0.91429 0.77263 0.89217 0.88634 0.88596 0.91700 0.91865 0.92133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.13 37.15 0.34 -0.86 16 2 C -0.11 -1.06 3.54 -88.79 -0.31 -1.37 16 3 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 4 C -0.13 -1.18 6.54 -24.46 -0.16 -1.34 16 5 C 0.10 1.16 6.55 -2.41 -0.02 1.15 16 6 N -0.65 -10.81 3.32 -176.10 -0.59 -11.40 16 7 C 0.68 15.13 8.45 -86.92 -0.73 14.40 16 8 O -0.46 -12.42 12.43 5.30 0.07 -12.35 16 9 N -0.67 -14.28 5.33 -15.79 -0.08 -14.36 16 10 C 0.39 9.88 7.43 -155.00 -1.15 8.72 16 11 C -0.36 -8.33 9.96 -38.89 -0.39 -8.71 16 12 C -0.04 -0.83 10.15 -39.39 -0.40 -1.23 16 13 C -0.31 -7.94 9.83 -38.66 -0.38 -8.32 16 14 C 0.27 7.85 6.55 -85.00 -0.56 7.30 16 15 C -0.43 -12.04 9.14 -37.73 -0.34 -12.39 16 16 H 0.08 2.18 7.85 -52.49 -0.41 1.77 16 17 C 0.06 1.52 5.50 -17.35 -0.10 1.43 16 18 N -0.65 -18.66 8.98 55.55 0.50 -18.16 16 19 Si 0.89 19.78 29.56 -169.99 -5.02 14.75 16 20 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 21 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 22 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 23 N -0.47 -13.78 5.73 -10.26 -0.06 -13.84 16 24 C 0.14 1.98 6.46 -3.06 -0.02 1.96 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 28 H 0.08 0.73 8.04 -51.93 -0.42 0.31 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.75 7.37 -51.93 -0.38 0.37 16 32 H 0.39 6.66 7.23 -40.82 -0.30 6.37 16 33 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 34 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 35 H 0.10 2.30 8.06 -52.49 -0.42 1.87 16 36 H 0.27 7.33 8.29 -40.82 -0.34 6.99 16 37 H 0.06 0.99 7.82 -51.93 -0.41 0.58 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 313.66 15.07 4.73 4.73 Total: -1.00 -34.02 313.66 -9.96 -43.97 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -5.27 Total: 5.92 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: -4.22 Total: 0.73 kcal Atomic # 7 Polarization: -57.53 SS G_CDS: -0.23 Total: -57.76 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.07 Total: -12.35 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.02 -9.96 -43.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881153077.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.609 kcal (2) G-P(sol) polarization free energy of solvation -34.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds