Wall clock time and date at job start Mon Mar 30 2020 01:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08996 * 110.78293 * 2 1 4 4 C 1.55153 * 110.72118 * 236.75555 * 2 1 3 5 5 C 1.55132 * 101.48572 * 205.97116 * 4 2 1 6 6 N 1.47427 * 104.72077 * 37.29548 * 5 4 2 7 7 C 1.34781 * 125.64381 * 155.82175 * 6 5 4 8 8 O 1.21579 * 119.99742 * 179.69399 * 7 6 5 9 9 N 1.34771 * 120.00669 * 359.68364 * 7 6 5 10 10 C 1.39239 * 120.00783 * 185.17102 * 9 7 6 11 11 C 1.39680 * 119.58021 * 174.69407 * 10 9 7 12 12 C 1.38653 * 119.49614 * 179.97438 * 11 10 9 13 13 C 1.38350 * 118.66929 * 359.97438 * 12 11 10 14 14 C 1.40565 * 119.13395 * 0.02562 * 13 12 11 15 15 C 1.41339 * 119.78965 * 179.97438 * 14 13 12 16 16 H 1.07996 * 119.99693 * 359.97438 * 15 14 13 17 17 C 1.40029 * 119.99941 * 179.72726 * 15 14 13 18 18 N 1.30736 * 120.00070 * 0.26698 * 17 15 14 19 19 Si 1.86794 * 119.99748 * 180.27755 * 17 15 14 20 20 H 1.48504 * 109.47212 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47600 * 119.99579 * 19 17 15 22 22 H 1.48503 * 109.47124 * 239.99829 * 19 17 15 23 23 N 1.31908 * 119.57248 * 354.92938 * 10 9 7 24 24 C 1.47013 * 108.70577 * 335.55092 * 6 5 4 25 25 H 1.09006 * 109.47636 * 298.22193 * 1 2 3 26 26 H 1.09002 * 109.46986 * 58.21601 * 1 2 3 27 27 H 1.09000 * 109.47506 * 178.22212 * 1 2 3 28 28 H 1.08994 * 111.00418 * 324.20733 * 4 2 1 29 29 H 1.08997 * 111.00564 * 88.06559 * 4 2 1 30 30 H 1.09003 * 110.49995 * 278.45478 * 5 4 2 31 31 H 1.08996 * 110.34443 * 156.05935 * 5 4 2 32 32 H 0.97004 * 119.99598 * 5.17723 * 9 7 6 33 33 H 1.07998 * 120.25335 * 359.97438 * 11 10 9 34 34 H 1.08001 * 120.66083 * 179.97438 * 12 11 10 35 35 H 1.08002 * 120.42957 * 180.02562 * 13 12 11 36 36 H 0.97006 * 120.00244 * 180.02562 * 18 17 15 37 37 H 1.09002 * 109.88556 * 120.70348 * 24 6 5 38 38 H 1.08997 * 109.88806 * 241.87315 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9167 1.0190 0.0000 4 6 2.0789 -0.7955 -1.2137 5 6 3.4665 -1.2456 -0.6859 6 7 3.2443 -1.5507 0.7393 7 6 3.9922 -2.3835 1.4901 8 8 3.7186 -2.5563 2.6620 9 7 5.0431 -3.0248 0.9418 10 6 5.7500 -3.9658 1.6858 11 6 6.7660 -4.7052 1.0758 12 6 7.4692 -5.6414 1.8185 13 6 7.1399 -5.8146 3.1510 14 6 6.1073 -5.0398 3.7071 15 6 5.7592 -5.2058 5.0669 16 1 6.2858 -5.9264 5.6749 17 6 4.7351 -4.4322 5.6268 18 7 4.0974 -3.5602 4.8906 19 14 4.2802 -4.6462 7.4259 20 1 5.1449 -5.6890 8.0345 21 1 4.4760 -3.3603 8.1424 22 1 2.8579 -5.0599 7.5311 23 7 5.4485 -4.1509 2.9566 24 6 2.0759 -0.7911 1.2074 25 1 -0.3634 0.4860 0.9055 26 1 -0.3633 0.5413 -0.8736 27 1 -0.3634 -1.0271 -0.0319 28 1 1.4452 -1.6537 -1.4373 29 1 2.1850 -0.1520 -2.0870 30 1 4.1947 -0.4416 -0.7927 31 1 3.8031 -2.1363 -1.2165 32 1 5.3072 -2.8307 0.0288 33 1 7.0021 -4.5488 0.0336 34 1 8.2580 -6.2237 1.3657 35 1 7.6695 -6.5357 3.7560 36 1 3.3881 -3.0240 5.2786 37 1 1.3128 -1.4756 1.5778 38 1 2.3739 -0.1022 1.9978 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881153077.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:40 Heat of formation + Delta-G solvation = 12.470870 kcal Electronic energy + Delta-G solvation = -21364.810229 eV Core-core repulsion = 18207.336895 eV Total energy + Delta-G solvation = -3157.473334 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.33410 -39.91676 -38.38374 -35.92036 -34.88626 -33.67753 -32.20486 -30.83438 -30.42139 -27.74662 -26.98007 -24.35801 -23.38489 -22.95889 -21.18120 -20.62118 -19.76647 -18.58272 -17.97559 -17.19932 -16.47904 -16.26751 -15.81481 -15.77749 -15.52827 -14.71774 -14.67303 -14.37405 -14.18092 -13.78859 -13.65038 -13.56320 -13.19823 -12.91054 -12.72191 -12.62710 -12.54018 -12.31692 -11.92414 -11.73968 -11.64232 -11.57133 -11.48443 -10.88842 -10.86140 -9.90406 -9.46905 -9.11666 -8.78244 -8.02473 -6.41884 0.95291 1.27765 1.38147 1.51068 1.53665 1.69774 2.26096 2.51374 3.02567 3.12692 3.61104 3.69860 3.96172 4.07173 4.34234 4.34619 4.45823 4.54997 4.65104 4.70086 4.76988 4.84276 4.91312 4.96572 4.96986 5.05332 5.11077 5.15939 5.26375 5.28595 5.45700 5.53734 5.68800 5.85261 5.92661 6.06875 6.28561 6.40219 6.82541 7.05686 7.14909 7.95846 8.37661 8.58250 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.017670 B = 0.005943 C = 0.004510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.236395 B = 4710.413099 C = 6207.080698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.092 4.092 3 H 0.098 0.902 4 C -0.115 4.115 5 C 0.089 3.911 6 N -0.645 5.645 7 C 0.671 3.329 8 O -0.517 6.517 9 N -0.659 5.659 10 C 0.362 3.638 11 C -0.345 4.345 12 C -0.032 4.032 13 C -0.329 4.329 14 C 0.236 3.764 15 C -0.466 4.466 16 H 0.087 0.913 17 C 0.008 3.992 18 N -0.688 5.688 19 Si 0.976 3.024 20 H -0.251 1.251 21 H -0.271 1.271 22 H -0.272 1.272 23 N -0.509 5.509 24 C 0.129 3.871 25 H 0.056 0.944 26 H 0.082 0.918 27 H 0.049 0.951 28 H 0.074 0.926 29 H 0.114 0.886 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.414 0.586 33 H 0.132 0.868 34 H 0.140 0.860 35 H 0.106 0.894 36 H 0.267 0.733 37 H 0.042 0.958 38 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.429 8.219 -13.277 16.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.111 4.111 3 H 0.117 0.883 4 C -0.153 4.153 5 C -0.033 4.033 6 N -0.388 5.388 7 C 0.371 3.629 8 O -0.385 6.385 9 N -0.310 5.310 10 C 0.122 3.878 11 C -0.370 4.370 12 C -0.056 4.056 13 C -0.352 4.352 14 C 0.111 3.889 15 C -0.497 4.497 16 H 0.105 0.895 17 C -0.218 4.218 18 N -0.307 5.307 19 Si 0.796 3.204 20 H -0.174 1.174 21 H -0.196 1.196 22 H -0.197 1.197 23 N -0.228 5.228 24 C 0.005 3.995 25 H 0.075 0.925 26 H 0.101 0.899 27 H 0.068 0.932 28 H 0.092 0.908 29 H 0.133 0.867 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.252 0.748 33 H 0.150 0.850 34 H 0.158 0.842 35 H 0.124 0.876 36 H 0.078 0.922 37 H 0.060 0.940 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.484 8.705 -11.951 16.145 hybrid contribution 0.704 -0.595 0.226 0.949 sum -5.779 8.110 -11.725 15.384 Atomic orbital electron populations 1.21726 0.92747 1.02075 1.02956 1.22219 0.97020 0.99251 0.92655 0.88325 1.22879 0.93906 1.00545 0.97931 1.22607 0.99632 1.01114 0.79967 1.47808 1.31608 1.47197 1.12141 1.16308 0.80981 0.80273 0.85301 1.91365 1.69710 1.63631 1.13817 1.42410 1.30737 1.41210 1.16612 1.18885 0.89756 0.88680 0.90458 1.20904 1.06332 1.08464 1.01330 1.21031 0.96720 0.94972 0.92900 1.21815 1.06702 1.09283 0.97430 1.18910 0.88444 0.87714 0.93851 1.19943 1.16100 1.19251 0.94440 0.89465 1.27101 0.96027 0.94682 1.03962 1.70588 1.12428 1.11717 1.35951 0.85266 0.78662 0.79124 0.77305 1.17445 1.19622 1.19695 1.68658 1.29571 1.21637 1.02956 1.21871 0.86277 0.93471 0.97841 0.92477 0.89913 0.93208 0.90758 0.86731 0.90397 0.90478 0.74815 0.85020 0.84218 0.87583 0.92197 0.93992 0.93912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.13 71.98 0.66 -1.40 16 2 C -0.09 -1.65 3.54 -9.61 -0.03 -1.68 16 3 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 4 C -0.11 -1.74 6.54 32.06 0.21 -1.53 16 5 C 0.09 1.88 6.55 86.93 0.57 2.44 16 6 N -0.65 -21.53 3.32 -829.32 -2.76 -24.29 16 7 C 0.67 30.65 8.45 179.05 1.51 32.16 16 8 O -0.52 -29.68 12.43 -3.97 -0.05 -29.72 16 9 N -0.66 -27.97 5.33 -322.13 -1.72 -29.69 16 10 C 0.36 18.58 7.43 133.26 0.99 19.57 16 11 C -0.34 -15.28 9.96 22.72 0.23 -15.05 16 12 C -0.03 -1.43 10.15 22.40 0.23 -1.20 16 13 C -0.33 -17.13 9.83 22.86 0.22 -16.91 16 14 C 0.24 14.20 6.55 40.19 0.26 14.47 16 15 C -0.47 -27.58 9.14 23.47 0.21 -27.37 16 16 H 0.09 4.81 7.85 -2.91 -0.02 4.79 16 17 C 0.01 0.43 5.50 85.29 0.47 0.90 16 18 N -0.69 -41.90 8.98 21.84 0.20 -41.71 16 19 Si 0.98 42.42 29.56 68.60 2.03 44.45 16 20 H -0.25 -10.31 7.11 99.48 0.71 -9.60 16 21 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 22 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 23 N -0.51 -30.84 5.73 -186.37 -1.07 -31.91 16 24 C 0.13 3.82 6.46 86.73 0.56 4.38 16 25 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 26 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.05 0.84 8.13 -2.39 -0.02 0.82 16 28 H 0.07 1.19 8.04 -2.39 -0.02 1.17 16 29 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.08 1.49 7.37 -2.39 -0.02 1.47 16 32 H 0.41 13.31 7.23 -92.71 -0.67 12.64 16 33 H 0.13 4.66 8.06 -2.91 -0.02 4.63 16 34 H 0.14 4.94 8.06 -2.91 -0.02 4.91 16 35 H 0.11 5.11 8.06 -2.91 -0.02 5.09 16 36 H 0.27 15.43 8.29 -92.70 -0.77 14.66 16 37 H 0.04 1.40 7.82 -2.39 -0.02 1.38 16 38 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -79.84 313.66 3.12 -76.72 By element: Atomic # 1 Polarization: 26.97 SS G_CDS: 0.40 Total: 27.37 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: 6.09 Total: 8.77 kcal Atomic # 7 Polarization: -122.24 SS G_CDS: -5.35 Total: -127.59 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -0.05 Total: -29.72 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -79.84 3.12 -76.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881153077.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.195 kcal (2) G-P(sol) polarization free energy of solvation -79.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds