Wall clock time and date at job start Mon Mar 30 2020 02:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34773 * 120.00006 * 2 1 4 4 O 1.21583 * 119.99698 * 180.02562 * 3 2 1 5 5 N 1.34767 * 120.00489 * 0.02562 * 3 2 1 6 6 C 1.39247 * 120.00684 * 185.22827 * 5 3 2 7 7 C 1.39684 * 119.58176 * 174.41803 * 6 5 3 8 8 C 1.38643 * 119.49646 * 179.97438 * 7 6 5 9 9 C 1.38346 * 118.67244 * 0.02562 * 8 7 6 10 10 C 1.40578 * 119.13309 * 359.97438 * 9 8 7 11 11 C 1.41327 * 119.78899 * 179.97438 * 10 9 8 12 12 H 1.08000 * 120.00002 * 0.02562 * 11 10 9 13 13 C 1.40028 * 120.00040 * 180.02562 * 11 10 9 14 14 N 1.30743 * 119.99846 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00013 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47120 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47185 * 119.99847 * 15 13 11 18 18 H 1.48505 * 109.46861 * 239.99712 * 15 13 11 19 19 N 1.31907 * 119.57052 * 354.14079 * 6 5 3 20 20 C 1.46498 * 119.99555 * 180.02562 * 2 1 3 21 21 C 1.53786 * 113.61432 * 314.14658 * 20 2 1 22 22 C 1.53950 * 87.01834 * 89.23394 * 21 20 2 23 23 C 1.53777 * 113.61971 * 51.75541 * 20 2 1 24 24 H 1.09001 * 109.47194 * 263.85664 * 1 2 3 25 25 H 1.09008 * 109.47129 * 23.85212 * 1 2 3 26 26 H 1.08997 * 109.47728 * 143.85411 * 1 2 3 27 27 H 0.97006 * 120.00148 * 5.23199 * 5 3 2 28 28 H 1.07998 * 120.24817 * 359.95868 * 7 6 5 29 29 H 1.08004 * 120.65975 * 180.02562 * 8 7 6 30 30 H 1.08005 * 120.43613 * 179.97438 * 9 8 7 31 31 H 0.96999 * 120.00000 * 180.02562 * 14 13 11 32 32 H 1.09000 * 112.84965 * 182.95987 * 20 2 1 33 33 H 1.09000 * 113.61567 * 203.75660 * 21 20 2 34 34 H 1.09006 * 113.61213 * 334.65767 * 21 20 2 35 35 H 1.08999 * 113.54068 * 270.81288 * 22 21 20 36 36 H 1.08995 * 113.66730 * 139.93272 * 22 21 20 37 37 H 1.09001 * 113.61733 * 25.35213 * 23 20 2 38 38 H 1.09002 * 113.61788 * 156.16765 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3547 1.1671 -0.0005 5 7 1.4651 2.3343 0.0005 6 6 2.1570 3.5378 -0.1094 7 6 1.4453 4.7341 -0.2258 8 6 2.1359 5.9314 -0.3346 9 6 3.5191 5.9031 -0.3248 10 6 4.1775 4.6669 -0.2049 11 6 5.5900 4.6219 -0.1939 12 1 6.1601 5.5354 -0.2771 13 6 6.2504 3.3928 -0.0752 14 7 5.5603 2.2869 0.0250 15 14 8.1175 3.3334 -0.0600 16 1 8.6576 4.7108 -0.1871 17 1 8.5833 2.7343 1.2164 18 1 8.5957 2.5077 -1.1979 19 7 3.4760 3.5339 -0.0966 20 6 2.1974 -1.2688 -0.0006 21 6 1.6554 -2.2934 1.0101 22 6 0.7139 -2.7776 -0.1076 23 6 1.7501 -2.2379 -1.1075 24 1 -0.3633 -0.1100 1.0218 25 1 -0.3634 0.9400 -0.4156 26 1 -0.3634 -0.8298 -0.6061 27 1 0.4981 2.3362 0.0775 28 1 0.3654 4.7264 -0.2313 29 1 1.6047 6.8674 -0.4251 30 1 4.0856 6.8189 -0.4082 31 1 6.0178 1.4356 0.1076 32 1 3.2778 -1.1339 0.0514 33 1 2.3911 -3.0379 1.3143 34 1 1.1356 -1.8408 1.8546 35 1 -0.2376 -2.2467 -0.1357 36 1 0.5966 -3.8606 -0.1422 37 1 1.3066 -1.7407 -1.9703 38 1 2.5122 -2.9663 -1.3844 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881153942.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:31 Heat of formation + Delta-G solvation = 54.246768 kcal Electronic energy + Delta-G solvation = -21598.080331 eV Core-core repulsion = 18442.418536 eV Total energy + Delta-G solvation = -3155.661796 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.57621 -40.18435 -38.82770 -35.92763 -35.11652 -34.42698 -32.19325 -30.74034 -28.41776 -27.49656 -26.51777 -25.50390 -23.63607 -23.11948 -21.29121 -20.12453 -19.42973 -18.62781 -17.93565 -16.88661 -16.47651 -16.42874 -16.24992 -15.90593 -15.49024 -15.04716 -14.66582 -14.62240 -13.94427 -13.73041 -13.65272 -13.35095 -13.20107 -13.06872 -12.90089 -12.71745 -12.53137 -12.30223 -11.74285 -11.58242 -11.50829 -11.37958 -11.16621 -10.87249 -10.71674 -9.88985 -9.40060 -9.09911 -8.77132 -8.01490 -6.40708 0.96360 1.28764 1.38859 1.51648 1.54027 1.71494 2.26775 2.51972 3.03084 3.06852 3.65635 3.80041 4.06177 4.07502 4.10115 4.23707 4.34800 4.56403 4.68787 4.77543 4.79627 4.82859 4.85158 4.95531 4.97392 5.06604 5.10485 5.14066 5.18900 5.28644 5.41078 5.65774 5.82189 5.87833 5.94901 6.06116 6.26865 6.41280 6.82843 7.06639 7.15166 7.98257 8.38782 8.59199 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.017165 B = 0.006421 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.878558 B = 4359.538054 C = 5844.306268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.616 5.616 3 C 0.657 3.343 4 O -0.515 6.515 5 N -0.661 5.661 6 C 0.362 3.638 7 C -0.346 4.346 8 C -0.032 4.032 9 C -0.330 4.330 10 C 0.236 3.764 11 C -0.466 4.466 12 H 0.086 0.914 13 C 0.008 3.992 14 N -0.686 5.686 15 Si 0.974 3.026 16 H -0.252 1.252 17 H -0.271 1.271 18 H -0.272 1.272 19 N -0.508 5.508 20 C 0.119 3.881 21 C -0.143 4.143 22 C -0.131 4.131 23 C -0.148 4.148 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.101 0.899 27 H 0.415 0.585 28 H 0.132 0.868 29 H 0.139 0.861 30 H 0.105 0.895 31 H 0.268 0.732 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.067 0.933 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.063 0.937 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.643 -10.020 0.060 15.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.356 5.356 3 C 0.357 3.643 4 O -0.383 6.383 5 N -0.313 5.313 6 C 0.122 3.878 7 C -0.371 4.371 8 C -0.057 4.057 9 C -0.353 4.353 10 C 0.111 3.889 11 C -0.497 4.497 12 H 0.104 0.896 13 C -0.217 4.217 14 N -0.305 5.305 15 Si 0.795 3.205 16 H -0.176 1.176 17 H -0.196 1.196 18 H -0.197 1.197 19 N -0.227 5.227 20 C 0.014 3.986 21 C -0.182 4.182 22 C -0.168 4.168 23 C -0.186 4.186 24 H 0.085 0.915 25 H 0.089 0.911 26 H 0.119 0.881 27 H 0.254 0.746 28 H 0.149 0.851 29 H 0.157 0.843 30 H 0.123 0.877 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.114 0.886 34 H 0.086 0.914 35 H 0.119 0.881 36 H 0.104 0.896 37 H 0.082 0.918 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.268 -11.090 0.157 15.114 hybrid contribution 0.044 0.939 -0.021 0.940 sum -10.224 -10.151 0.136 14.408 Atomic orbital electron populations 1.22196 0.78454 1.04038 1.03041 1.46810 1.07046 1.03067 1.78697 1.16700 0.86285 0.81251 0.80091 1.91355 1.11023 1.84600 1.51290 1.42580 1.09968 1.02803 1.75966 1.18901 0.90673 0.84801 0.93440 1.20906 0.99473 0.91490 1.25262 1.21020 0.93250 0.97477 0.93909 1.21808 0.95459 0.97760 1.20269 1.18905 0.94421 0.86974 0.88628 1.19929 0.90729 0.94609 1.44452 0.89576 1.27077 1.04827 0.95232 0.94579 1.70583 1.37076 0.98065 1.24734 0.85283 0.77251 0.79603 0.78325 1.17568 1.19620 1.19682 1.68662 1.03805 1.28820 1.21390 1.21836 0.95889 0.82178 0.98697 1.23312 0.99931 0.97664 0.97250 1.23155 0.97598 1.01964 0.94061 1.23330 1.00094 0.98147 0.97061 0.91462 0.91072 0.88115 0.74589 0.85051 0.84326 0.87695 0.92152 0.91699 0.88569 0.91410 0.88063 0.89620 0.91793 0.88656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.31 8.94 127.77 1.14 2.45 16 2 N -0.62 -19.63 3.09 -837.66 -2.59 -22.22 16 3 C 0.66 29.08 8.24 179.06 1.48 30.55 16 4 O -0.51 -28.75 11.56 -3.98 -0.05 -28.79 16 5 N -0.66 -27.38 5.22 -322.13 -1.68 -29.06 16 6 C 0.36 18.33 7.43 133.26 0.99 19.32 16 7 C -0.35 -15.20 9.96 22.72 0.23 -14.97 16 8 C -0.03 -1.44 10.15 22.39 0.23 -1.21 16 9 C -0.33 -17.11 9.83 22.87 0.22 -16.88 16 10 C 0.24 14.11 6.55 40.19 0.26 14.37 16 11 C -0.47 -27.43 9.14 23.46 0.21 -27.21 16 12 H 0.09 4.74 7.85 -2.91 -0.02 4.71 16 13 C 0.01 0.47 5.50 85.29 0.47 0.94 16 14 N -0.69 -41.25 8.99 21.84 0.20 -41.05 16 15 Si 0.97 42.13 29.56 68.60 2.03 44.16 16 16 H -0.25 -10.34 7.11 99.48 0.71 -9.63 16 17 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 18 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 19 N -0.51 -30.43 5.74 -186.36 -1.07 -31.50 16 20 C 0.12 3.53 4.49 45.52 0.20 3.73 16 21 C -0.14 -3.03 7.52 31.18 0.23 -2.79 16 22 C -0.13 -2.09 7.44 31.18 0.23 -1.86 16 23 C -0.15 -3.23 7.42 31.12 0.23 -3.00 16 24 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.07 1.34 6.13 -2.38 -0.01 1.32 16 26 H 0.10 1.55 4.91 -2.39 -0.01 1.53 16 27 H 0.41 12.87 6.38 -92.70 -0.59 12.28 16 28 H 0.13 4.60 8.06 -2.91 -0.02 4.58 16 29 H 0.14 4.89 8.06 -2.91 -0.02 4.87 16 30 H 0.10 5.06 8.06 -2.91 -0.02 5.03 16 31 H 0.27 15.23 8.29 -92.71 -0.77 14.46 16 32 H 0.06 2.47 7.16 -2.39 -0.02 2.46 16 33 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.07 1.46 8.12 -2.38 -0.02 1.44 16 35 H 0.10 1.35 5.12 -2.39 -0.01 1.33 16 36 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.06 1.46 8.09 -2.39 -0.02 1.44 16 38 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -78.11 306.85 3.47 -74.64 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: 0.50 Total: 30.39 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: 6.13 Total: 3.44 kcal Atomic # 7 Polarization: -118.69 SS G_CDS: -5.14 Total: -123.84 kcal Atomic # 8 Polarization: -28.75 SS G_CDS: -0.05 Total: -28.79 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -78.11 3.47 -74.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881153942.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.887 kcal (2) G-P(sol) polarization free energy of solvation -78.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds