Wall clock time and date at job start Mon Mar 30 2020 01:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48529 * 110.99914 * 2 1 4 4 C 1.54940 * 103.22602 * 200.27860 * 3 2 1 5 5 C 1.54600 * 102.91844 * 37.41635 * 4 3 2 6 6 H 1.08993 * 110.39557 * 97.00375 * 5 4 3 7 7 C 1.50703 * 110.30281 * 219.12747 * 5 4 3 8 8 O 1.21274 * 120.00058 * 357.16654 * 7 5 4 9 9 N 1.34774 * 119.99634 * 177.16929 * 7 5 4 10 10 C 1.39275 * 119.99775 * 185.14817 * 9 7 5 11 11 C 1.39674 * 119.57160 * 174.67771 * 10 9 7 12 12 C 1.38653 * 119.49216 * 180.02562 * 11 10 9 13 13 C 1.38344 * 118.67478 * 359.97438 * 12 11 10 14 14 C 1.40580 * 119.12449 * 0.02562 * 13 12 11 15 15 C 1.41338 * 119.78515 * 180.02562 * 14 13 12 16 16 H 1.08003 * 120.00064 * 359.97438 * 15 14 13 17 17 C 1.40032 * 120.00242 * 180.02562 * 15 14 13 18 18 N 1.30750 * 119.99654 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00310 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47310 * 59.99775 * 19 17 15 21 21 H 1.48503 * 109.46894 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47167 * 299.99791 * 19 17 15 23 23 N 1.31897 * 119.57444 * 354.70137 * 10 9 7 24 24 C 1.47897 * 110.99695 * 242.60129 * 2 1 3 25 25 H 1.09005 * 109.47252 * 177.39992 * 1 2 3 26 26 H 1.09007 * 109.47227 * 297.39789 * 1 2 3 27 27 H 1.08997 * 109.47277 * 57.39938 * 1 2 3 28 28 H 1.08998 * 110.66765 * 318.71474 * 3 2 1 29 29 H 1.08998 * 110.67220 * 81.67934 * 3 2 1 30 30 H 1.08997 * 110.72476 * 279.05787 * 4 3 2 31 31 H 1.09003 * 110.72263 * 155.77047 * 4 3 2 32 32 H 0.96999 * 120.00711 * 5.15242 * 9 7 5 33 33 H 1.07992 * 120.25584 * 0.28059 * 11 10 9 34 34 H 1.08003 * 120.66486 * 180.02562 * 12 11 10 35 35 H 1.07995 * 120.44356 * 179.97438 * 13 12 11 36 36 H 0.96993 * 119.99681 * 179.97438 * 18 17 15 37 37 H 1.08998 * 109.92022 * 26.49561 * 24 2 1 38 38 H 1.09002 * 109.92028 * 265.19217 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3866 0.0000 4 6 3.4492 1.2106 -0.5228 5 6 3.2982 0.1053 -1.5931 6 1 3.2142 0.5470 -2.5860 7 6 4.4716 -0.8388 -1.5390 8 8 5.3806 -0.6325 -0.7632 9 7 4.5108 -1.9123 -2.3529 10 6 5.5401 -2.8424 -2.2297 11 6 5.5124 -4.0073 -2.9998 12 6 6.5377 -4.9323 -2.8754 13 6 7.5641 -4.6700 -1.9857 14 6 7.5347 -3.4793 -1.2389 15 6 8.5764 -3.1970 -0.3264 16 1 9.3913 -3.8952 -0.2042 17 6 8.5515 -2.0126 0.4202 18 7 7.5647 -1.1676 0.2727 19 14 9.9278 -1.6398 1.6268 20 1 11.2209 -1.5780 0.8992 21 1 9.6683 -0.3345 2.2858 22 1 9.9888 -2.7102 2.6543 23 7 6.5281 -2.6120 -1.3868 24 6 1.9990 -0.6354 -1.2259 25 1 -0.3634 -1.0266 -0.0466 26 1 -0.3634 0.4729 0.9124 27 1 -0.3634 0.5537 -0.8657 28 1 1.4237 2.0204 -0.6729 29 1 2.0014 1.7988 1.0091 30 1 4.1115 0.8835 0.2787 31 1 3.8123 2.1352 -0.9716 32 1 3.8222 -2.0372 -3.0246 33 1 4.7009 -4.1841 -3.6900 34 1 6.5356 -5.8392 -3.4619 35 1 8.3768 -5.3710 -1.8657 36 1 7.5472 -0.3473 0.7900 37 1 1.2758 -0.5403 -2.0358 38 1 2.2122 -1.6874 -1.0365 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882475050.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:54 Heat of formation + Delta-G solvation = 31.473012 kcal Electronic energy + Delta-G solvation = -21445.053852 eV Core-core repulsion = 18288.404513 eV Total energy + Delta-G solvation = -3156.649340 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.81184 -38.35704 -37.02518 -34.08931 -32.97192 -32.08887 -30.27545 -29.54726 -28.41018 -25.84487 -25.42901 -22.80301 -21.40553 -21.15905 -20.64745 -18.98029 -17.71817 -16.54067 -16.16502 -15.81207 -15.05761 -14.64556 -14.41240 -14.23960 -13.96924 -13.60857 -13.27719 -12.97963 -12.81880 -12.40301 -12.02806 -11.89934 -11.63813 -11.53805 -11.27447 -11.12771 -10.97568 -10.93100 -10.63295 -10.58382 -10.43278 -9.91685 -9.61508 -8.97444 -8.87139 -8.45405 -7.92893 -7.16618 -6.92364 -6.09971 -4.36423 2.82149 3.11432 3.19393 3.21163 3.30348 3.75465 3.87705 4.00027 4.09646 4.67374 4.76999 4.95430 5.11257 5.24570 5.28179 5.35665 5.49043 5.57803 5.66045 5.74495 5.93434 5.94469 6.07515 6.12911 6.16064 6.50523 6.52368 6.72965 6.84000 6.88054 6.89199 6.98489 7.27808 7.59170 7.66815 7.84612 8.10563 8.24204 8.50911 8.78342 9.08647 9.32812 10.28709 10.52115 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.017190 B = 0.006139 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.480081 B = 4559.900805 C = 5859.026551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.520 5.520 3 C 0.035 3.965 4 C -0.107 4.107 5 C -0.121 4.121 6 H 0.091 0.909 7 C 0.480 3.520 8 O -0.403 6.403 9 N -0.667 5.667 10 C 0.372 3.628 11 C -0.358 4.358 12 C -0.036 4.036 13 C -0.306 4.306 14 C 0.271 3.729 15 C -0.426 4.426 16 H 0.081 0.919 17 C 0.058 3.942 18 N -0.655 5.655 19 Si 0.896 3.104 20 H -0.267 1.267 21 H -0.279 1.279 22 H -0.267 1.267 23 N -0.473 5.473 24 C 0.047 3.953 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.025 0.975 28 H 0.041 0.959 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.072 0.928 32 H 0.397 0.603 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.273 0.727 37 H 0.048 0.952 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.600 5.358 -2.641 13.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.244 5.244 3 C -0.093 4.093 4 C -0.146 4.146 5 C -0.143 4.143 6 H 0.109 0.891 7 C 0.261 3.739 8 O -0.265 6.265 9 N -0.314 5.314 10 C 0.134 3.866 11 C -0.384 4.384 12 C -0.061 4.061 13 C -0.329 4.329 14 C 0.146 3.854 15 C -0.456 4.456 16 H 0.100 0.900 17 C -0.171 4.171 18 N -0.273 5.273 19 Si 0.720 3.280 20 H -0.192 1.192 21 H -0.204 1.204 22 H -0.192 1.192 23 N -0.192 5.192 24 C -0.082 4.082 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.044 0.956 28 H 0.059 0.941 29 H 0.101 0.899 30 H 0.118 0.882 31 H 0.091 0.909 32 H 0.230 0.770 33 H 0.108 0.892 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.856 6.279 -0.939 12.577 hybrid contribution -0.266 -0.341 -1.259 1.332 sum -11.122 5.938 -2.199 12.799 Atomic orbital electron populations 1.22514 0.88097 1.01945 1.00643 1.64723 1.07721 1.15196 1.36756 1.23284 0.95417 0.89505 1.01102 1.22446 0.96312 0.97022 0.98779 1.22242 0.94371 0.96765 1.00950 0.89052 1.20440 0.88387 0.82226 0.82868 1.91128 1.33871 1.68842 1.32699 1.43428 1.27051 1.23811 1.37104 1.18635 0.88761 0.86411 0.92833 1.20491 1.05257 0.99787 1.12869 1.20552 0.93399 0.96257 0.95860 1.21615 1.02287 1.02136 1.06900 1.18385 0.90172 0.86627 0.90228 1.19546 1.05375 1.03441 1.17252 0.90048 1.26172 0.96537 0.96599 0.97826 1.70311 1.23863 1.05327 1.27816 0.86584 0.82071 0.78322 0.80986 1.19233 1.20388 1.19193 1.68703 1.01272 1.30458 1.18751 1.22846 0.94259 1.00093 0.90962 0.91365 0.91346 0.95617 0.94064 0.89927 0.88223 0.90924 0.76983 0.89184 0.88708 0.88630 0.91549 0.93410 0.89681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.40 60.07 0.56 0.74 16 2 N -0.52 -6.93 5.55 -238.72 -1.33 -8.25 16 3 C 0.03 0.42 6.56 -1.90 -0.01 0.40 16 4 C -0.11 -1.54 6.39 -24.87 -0.16 -1.70 16 5 C -0.12 -1.76 3.39 -90.41 -0.31 -2.07 16 6 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 7 C 0.48 9.66 6.92 -10.98 -0.08 9.58 16 8 O -0.40 -10.09 11.22 5.56 0.06 -10.03 16 9 N -0.67 -13.21 5.21 -11.40 -0.06 -13.27 16 10 C 0.37 9.19 7.43 -154.98 -1.15 8.04 16 11 C -0.36 -8.16 9.96 -38.89 -0.39 -8.54 16 12 C -0.04 -0.84 10.15 -39.39 -0.40 -1.24 16 13 C -0.31 -7.84 9.83 -38.66 -0.38 -8.22 16 14 C 0.27 7.73 6.55 -85.00 -0.56 7.17 16 15 C -0.43 -11.87 9.14 -37.73 -0.34 -12.21 16 16 H 0.08 2.12 7.85 -52.48 -0.41 1.71 16 17 C 0.06 1.54 5.50 -17.34 -0.10 1.45 16 18 N -0.65 -18.28 8.99 55.55 0.50 -17.78 16 19 Si 0.90 19.49 29.56 -169.99 -5.02 14.47 16 20 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 21 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 22 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 23 N -0.47 -13.43 5.74 -10.25 -0.06 -13.49 16 24 C 0.05 0.61 6.31 -2.76 -0.02 0.60 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.03 0.23 8.00 -51.93 -0.42 -0.18 16 28 H 0.04 0.43 7.96 -51.93 -0.41 0.01 16 29 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.10 1.77 6.91 -51.93 -0.36 1.41 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.40 6.08 8.70 -40.82 -0.36 5.73 16 33 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 34 H 0.09 1.86 8.06 -52.48 -0.42 1.43 16 35 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 36 H 0.27 7.15 8.29 -40.82 -0.34 6.82 16 37 H 0.05 0.51 7.73 -51.93 -0.40 0.11 16 38 H 0.08 1.27 7.59 -51.93 -0.39 0.88 16 LS Contribution 313.02 15.07 4.72 4.72 Total: -1.00 -32.81 313.02 -9.78 -42.59 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -5.27 Total: 7.05 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -3.32 Total: -6.00 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: -0.94 Total: -52.79 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.06 Total: -10.03 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.47 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.81 -9.78 -42.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882475050.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.066 kcal (2) G-P(sol) polarization free energy of solvation -32.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds