Wall clock time and date at job start Mon Mar 30 2020 01:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48529 * 110.99914 * 2 1 4 4 C 1.54940 * 103.22602 * 200.27860 * 3 2 1 5 5 C 1.54600 * 102.91844 * 37.41635 * 4 3 2 6 6 H 1.08993 * 110.39557 * 97.00375 * 5 4 3 7 7 C 1.50703 * 110.30281 * 219.12747 * 5 4 3 8 8 O 1.21274 * 120.00058 * 357.16654 * 7 5 4 9 9 N 1.34774 * 119.99634 * 177.16929 * 7 5 4 10 10 C 1.39275 * 119.99775 * 185.14817 * 9 7 5 11 11 C 1.39674 * 119.57160 * 174.67771 * 10 9 7 12 12 C 1.38653 * 119.49216 * 180.02562 * 11 10 9 13 13 C 1.38344 * 118.67478 * 359.97438 * 12 11 10 14 14 C 1.40580 * 119.12449 * 0.02562 * 13 12 11 15 15 C 1.41338 * 119.78515 * 180.02562 * 14 13 12 16 16 H 1.08003 * 120.00064 * 359.97438 * 15 14 13 17 17 C 1.40032 * 120.00242 * 180.02562 * 15 14 13 18 18 N 1.30750 * 119.99654 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00310 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47310 * 59.99775 * 19 17 15 21 21 H 1.48503 * 109.46894 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47167 * 299.99791 * 19 17 15 23 23 N 1.31897 * 119.57444 * 354.70137 * 10 9 7 24 24 C 1.47897 * 110.99695 * 242.60129 * 2 1 3 25 25 H 1.09005 * 109.47252 * 177.39992 * 1 2 3 26 26 H 1.09007 * 109.47227 * 297.39789 * 1 2 3 27 27 H 1.08997 * 109.47277 * 57.39938 * 1 2 3 28 28 H 1.08998 * 110.66765 * 318.71474 * 3 2 1 29 29 H 1.08998 * 110.67220 * 81.67934 * 3 2 1 30 30 H 1.08997 * 110.72476 * 279.05787 * 4 3 2 31 31 H 1.09003 * 110.72263 * 155.77047 * 4 3 2 32 32 H 0.96999 * 120.00711 * 5.15242 * 9 7 5 33 33 H 1.07992 * 120.25584 * 0.28059 * 11 10 9 34 34 H 1.08003 * 120.66486 * 180.02562 * 12 11 10 35 35 H 1.07995 * 120.44356 * 179.97438 * 13 12 11 36 36 H 0.96993 * 119.99681 * 179.97438 * 18 17 15 37 37 H 1.08998 * 109.92022 * 26.49561 * 24 2 1 38 38 H 1.09002 * 109.92028 * 265.19217 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3866 0.0000 4 6 3.4492 1.2106 -0.5228 5 6 3.2982 0.1053 -1.5931 6 1 3.2142 0.5470 -2.5860 7 6 4.4716 -0.8388 -1.5390 8 8 5.3806 -0.6325 -0.7632 9 7 4.5108 -1.9123 -2.3529 10 6 5.5401 -2.8424 -2.2297 11 6 5.5124 -4.0073 -2.9998 12 6 6.5377 -4.9323 -2.8754 13 6 7.5641 -4.6700 -1.9857 14 6 7.5347 -3.4793 -1.2389 15 6 8.5764 -3.1970 -0.3264 16 1 9.3913 -3.8952 -0.2042 17 6 8.5515 -2.0126 0.4202 18 7 7.5647 -1.1676 0.2727 19 14 9.9278 -1.6398 1.6268 20 1 11.2209 -1.5780 0.8992 21 1 9.6683 -0.3345 2.2858 22 1 9.9888 -2.7102 2.6543 23 7 6.5281 -2.6120 -1.3868 24 6 1.9990 -0.6354 -1.2259 25 1 -0.3634 -1.0266 -0.0466 26 1 -0.3634 0.4729 0.9124 27 1 -0.3634 0.5537 -0.8657 28 1 1.4237 2.0204 -0.6729 29 1 2.0014 1.7988 1.0091 30 1 4.1115 0.8835 0.2787 31 1 3.8123 2.1352 -0.9716 32 1 3.8222 -2.0372 -3.0246 33 1 4.7009 -4.1841 -3.6900 34 1 6.5356 -5.8392 -3.4619 35 1 8.3768 -5.3710 -1.8657 36 1 7.5472 -0.3473 0.7900 37 1 1.2758 -0.5403 -2.0358 38 1 2.2122 -1.6874 -1.0365 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882475050.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:54 Heat of formation + Delta-G solvation = 8.765610 kcal Electronic energy + Delta-G solvation = -21446.038519 eV Core-core repulsion = 18288.404513 eV Total energy + Delta-G solvation = -3157.634007 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.27369 -39.90393 -38.56568 -35.91748 -34.83456 -33.20420 -32.19957 -31.13293 -29.78344 -27.47073 -26.68637 -24.37383 -23.24052 -22.35582 -22.02257 -20.52829 -19.52300 -18.05653 -17.83224 -16.99749 -16.46104 -16.27902 -16.18326 -15.56123 -15.45236 -15.13442 -14.77132 -14.53338 -14.13901 -13.83810 -13.74949 -13.15423 -12.87131 -12.80334 -12.71904 -12.57381 -12.47482 -12.39997 -12.28112 -12.05553 -11.78841 -11.70948 -11.45614 -10.84151 -10.54311 -9.88580 -9.35405 -9.06140 -8.79895 -8.03778 -6.41291 0.93792 1.26764 1.39338 1.51198 1.53518 2.16096 2.26870 2.36241 3.00379 3.08531 3.56479 3.66268 3.95731 4.08650 4.29520 4.33132 4.37592 4.44212 4.54067 4.59726 4.66858 4.76530 4.86670 4.88504 4.96627 5.00856 5.04155 5.06231 5.08554 5.29202 5.34629 5.69478 5.87513 5.90679 5.93644 6.12113 6.16291 6.39004 6.76717 6.86915 7.09398 7.74563 8.36694 8.57802 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.017190 B = 0.006139 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.480081 B = 4559.900805 C = 5859.026551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.552 5.552 3 C 0.044 3.956 4 C -0.110 4.110 5 C -0.108 4.108 6 H 0.126 0.874 7 C 0.470 3.530 8 O -0.458 6.458 9 N -0.655 5.655 10 C 0.349 3.651 11 C -0.347 4.347 12 C -0.035 4.035 13 C -0.331 4.331 14 C 0.236 3.764 15 C -0.468 4.468 16 H 0.085 0.915 17 C 0.011 3.989 18 N -0.689 5.689 19 Si 0.974 3.026 20 H -0.260 1.260 21 H -0.274 1.274 22 H -0.261 1.261 23 N -0.508 5.508 24 C 0.053 3.947 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.044 0.956 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.055 0.945 31 H 0.087 0.913 32 H 0.419 0.581 33 H 0.132 0.868 34 H 0.136 0.864 35 H 0.103 0.897 36 H 0.270 0.730 37 H 0.083 0.917 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.578 5.708 -3.947 15.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.276 5.276 3 C -0.083 4.083 4 C -0.148 4.148 5 C -0.130 4.130 6 H 0.144 0.856 7 C 0.253 3.747 8 O -0.324 6.324 9 N -0.304 5.304 10 C 0.110 3.890 11 C -0.372 4.372 12 C -0.059 4.059 13 C -0.354 4.354 14 C 0.111 3.889 15 C -0.499 4.499 16 H 0.103 0.897 17 C -0.215 4.215 18 N -0.308 5.308 19 Si 0.795 3.205 20 H -0.184 1.184 21 H -0.198 1.198 22 H -0.186 1.186 23 N -0.228 5.228 24 C -0.075 4.075 25 H 0.088 0.912 26 H 0.093 0.907 27 H 0.063 0.937 28 H 0.088 0.912 29 H 0.102 0.898 30 H 0.073 0.927 31 H 0.106 0.894 32 H 0.256 0.744 33 H 0.150 0.850 34 H 0.154 0.846 35 H 0.121 0.879 36 H 0.081 0.919 37 H 0.101 0.899 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.893 6.617 -2.291 14.672 hybrid contribution 0.213 -0.529 -0.974 1.129 sum -12.680 6.088 -3.265 14.440 Atomic orbital electron populations 1.22554 0.86072 1.02529 1.01882 1.64666 1.09822 1.15966 1.37194 1.23231 0.93763 0.89489 1.01794 1.22403 0.97334 0.97462 0.97610 1.22226 0.92413 0.95468 1.02856 0.85574 1.21490 0.89226 0.82372 0.81569 1.91129 1.36360 1.70198 1.34682 1.43426 1.26357 1.22994 1.37619 1.19195 0.89138 0.88124 0.92570 1.20985 1.05819 0.98430 1.12002 1.21032 0.92239 0.97622 0.95001 1.21797 1.03876 1.01802 1.07966 1.18886 0.90850 0.87966 0.91245 1.19878 1.06230 1.04770 1.18979 0.89695 1.27034 0.99088 0.95950 0.99399 1.70519 1.25815 1.05553 1.28928 0.85396 0.78627 0.78153 0.78302 1.18383 1.19824 1.18572 1.68672 1.02325 1.31383 1.20372 1.22763 0.94066 0.98451 0.92186 0.91215 0.90653 0.93711 0.91206 0.89822 0.92662 0.89427 0.74367 0.85040 0.84582 0.87864 0.91936 0.89857 0.92068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.40 127.69 1.20 1.51 16 2 N -0.55 -13.59 5.55 -909.16 -5.05 -18.64 16 3 C 0.04 0.98 6.56 86.65 0.57 1.55 16 4 C -0.11 -3.08 6.39 31.80 0.20 -2.88 16 5 C -0.11 -2.97 3.39 -10.66 -0.04 -3.00 16 6 H 0.13 2.62 8.14 -2.39 -0.02 2.61 16 7 C 0.47 19.11 6.92 87.66 0.61 19.72 16 8 O -0.46 -24.07 11.22 -3.01 -0.03 -24.11 16 9 N -0.66 -25.54 5.21 -308.37 -1.61 -27.14 16 10 C 0.35 17.25 7.43 133.25 0.99 18.24 16 11 C -0.35 -15.11 9.96 22.72 0.23 -14.89 16 12 C -0.03 -1.55 10.15 22.39 0.23 -1.32 16 13 C -0.33 -17.19 9.83 22.87 0.22 -16.96 16 14 C 0.24 14.00 6.55 40.19 0.26 14.26 16 15 C -0.47 -27.33 9.14 23.47 0.21 -27.12 16 16 H 0.08 4.64 7.85 -2.91 -0.02 4.62 16 17 C 0.01 0.60 5.50 85.29 0.47 1.07 16 18 N -0.69 -40.61 8.99 21.84 0.20 -40.41 16 19 Si 0.97 41.69 29.56 68.60 2.03 43.72 16 20 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 21 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 22 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 23 N -0.51 -29.89 5.74 -186.35 -1.07 -30.96 16 24 C 0.05 1.28 6.31 86.45 0.55 1.83 16 25 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 26 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 27 H 0.04 0.62 8.00 -2.39 -0.02 0.60 16 28 H 0.07 1.16 7.96 -2.39 -0.02 1.14 16 29 H 0.08 1.80 8.14 -2.39 -0.02 1.79 16 30 H 0.05 2.07 6.91 -2.39 -0.02 2.05 16 31 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.42 11.91 8.70 -92.71 -0.81 11.10 16 33 H 0.13 4.56 8.06 -2.91 -0.02 4.54 16 34 H 0.14 4.85 8.06 -2.91 -0.02 4.82 16 35 H 0.10 5.00 8.06 -2.91 -0.02 4.97 16 36 H 0.27 15.04 8.29 -92.71 -0.77 14.27 16 37 H 0.08 1.42 7.73 -2.39 -0.02 1.40 16 38 H 0.06 1.76 7.59 -2.39 -0.02 1.74 16 Total: -1.00 -76.49 313.02 0.43 -76.06 By element: Atomic # 1 Polarization: 29.22 SS G_CDS: 0.26 Total: 29.48 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: 5.70 Total: -8.00 kcal Atomic # 7 Polarization: -109.62 SS G_CDS: -7.53 Total: -117.15 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -0.03 Total: -24.11 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -76.49 0.43 -76.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882475050.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.827 kcal (2) G-P(sol) polarization free energy of solvation -76.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds