Wall clock time and date at job start Mon Mar 30 2020 01:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.48558 * 110.99867 * 2 1 4 4 C 1.54380 * 104.59412 * 200.96256 * 3 2 1 5 5 C 1.54266 * 105.06217 * 23.85507 * 4 3 2 6 6 C 1.48561 * 110.99667 * 244.58269 * 2 1 3 7 7 H 1.09001 * 110.51076 * 40.21232 * 6 2 1 8 8 C 1.50703 * 110.41072 * 277.81579 * 6 2 1 9 9 O 1.21271 * 119.99814 * 344.83044 * 8 6 2 10 10 N 1.34774 * 119.99861 * 164.82872 * 8 6 2 11 11 C 1.39265 * 119.99848 * 185.13967 * 10 8 6 12 12 C 1.39680 * 119.57150 * 174.61165 * 11 10 8 13 13 C 1.38655 * 119.49419 * 179.72272 * 12 11 10 14 14 C 1.38351 * 118.66694 * 0.02562 * 13 12 11 15 15 C 1.40576 * 119.13389 * 359.97438 * 14 13 12 16 16 C 1.41336 * 119.79075 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99654 * 0.02562 * 16 15 14 18 18 C 1.40017 * 120.00173 * 180.02562 * 16 15 14 19 19 N 1.30747 * 120.00356 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00310 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46964 * 89.99949 * 20 18 16 22 22 H 1.48495 * 109.47464 * 210.00125 * 20 18 16 23 23 H 1.48499 * 109.46868 * 330.00793 * 20 18 16 24 24 N 1.31903 * 119.57862 * 354.33964 * 11 10 8 25 25 H 1.08997 * 109.46804 * 175.42245 * 1 2 3 26 26 H 1.09001 * 109.46399 * 295.41699 * 1 2 3 27 27 H 1.08994 * 109.47411 * 55.41387 * 1 2 3 28 28 H 1.08997 * 110.41159 * 82.18618 * 3 2 1 29 29 H 1.09000 * 110.51507 * 319.79211 * 3 2 1 30 30 H 1.08998 * 110.32921 * 264.95612 * 4 3 2 31 31 H 1.09001 * 110.40864 * 142.79206 * 4 3 2 32 32 H 1.08997 * 110.32231 * 241.10824 * 5 4 3 33 33 H 1.08992 * 110.32673 * 118.89293 * 5 4 3 34 34 H 0.97000 * 120.00204 * 5.13899 * 10 8 6 35 35 H 1.07992 * 120.25416 * 359.70261 * 12 11 10 36 36 H 1.08001 * 120.66489 * 179.97438 * 13 12 11 37 37 H 1.08006 * 120.42942 * 179.97438 * 14 13 12 38 38 H 0.96994 * 120.00657 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4432 1.2502 -0.5345 5 6 3.4433 -0.0539 -1.3587 6 6 2.0014 -0.5953 -1.2527 7 1 1.4103 -0.2729 -2.1100 8 6 2.0104 -2.0993 -1.1575 9 8 1.8829 -2.6393 -0.0791 10 7 2.1600 -2.8441 -2.2707 11 6 2.0614 -4.2314 -2.1988 12 6 2.1050 -4.9873 -3.3725 13 6 2.0125 -6.3688 -3.2986 14 6 1.8784 -6.9594 -2.0546 15 6 1.8408 -6.1438 -0.9103 16 6 1.7047 -6.7325 0.3674 17 1 1.6304 -7.8057 0.4623 18 6 1.6663 -5.9243 1.5102 19 7 1.7558 -4.6250 1.3953 20 14 1.4857 -6.7023 3.1988 21 1 2.8310 -6.9959 3.7550 22 1 0.7705 -5.7651 4.1018 23 1 0.7122 -7.9645 3.0821 24 7 1.9335 -4.8149 -1.0228 25 1 -0.3633 -1.0244 -0.0820 26 1 -0.3632 0.4411 0.9282 27 1 -0.3634 0.5833 -0.8460 28 1 2.0080 1.7916 1.0121 29 1 1.4104 2.0229 -0.6590 30 1 4.1484 1.1748 0.2933 31 1 3.6953 2.0994 -1.1696 32 1 4.1483 -0.7693 -0.9353 33 1 3.6935 0.1555 -2.3986 34 1 2.3364 -2.4139 -3.1220 35 1 2.2096 -4.4996 -4.3303 36 1 2.0437 -6.9717 -4.1941 37 1 1.8035 -8.0330 -1.9640 38 1 1.7288 -4.0650 2.1869 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882475331.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:36 Heat of formation + Delta-G solvation = 35.552396 kcal Electronic energy + Delta-G solvation = -21639.165521 eV Core-core repulsion = 18482.693077 eV Total energy + Delta-G solvation = -3156.472444 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.73960 -38.32061 -36.80236 -33.99545 -32.94084 -32.06782 -30.30387 -29.76568 -28.38023 -25.59651 -25.41797 -22.88548 -21.43045 -20.91961 -20.68932 -19.05741 -17.70289 -16.55994 -16.14663 -15.70886 -14.72930 -14.56403 -14.38981 -14.01728 -13.93709 -13.66969 -13.45065 -12.94229 -12.74500 -12.26791 -12.12491 -11.95430 -11.66936 -11.36399 -11.32441 -11.10956 -10.92621 -10.89874 -10.61126 -10.58358 -10.42025 -9.88540 -9.58408 -8.95278 -8.85561 -8.27183 -7.91436 -7.12572 -6.90033 -6.07459 -4.34779 2.84062 3.12553 3.21704 3.23921 3.31148 3.63819 3.82144 4.11429 4.34863 4.71916 4.75819 4.97691 4.99935 5.23258 5.39115 5.48018 5.51638 5.61368 5.67877 5.82103 5.87655 6.06396 6.09477 6.15709 6.17282 6.22253 6.53240 6.71164 6.85331 6.89635 6.95345 7.11053 7.30149 7.61318 7.69308 7.85873 8.13740 8.26730 8.53686 8.81031 9.10579 9.40550 10.30609 10.54598 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.016262 B = 0.006755 C = 0.005141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.340086 B = 4144.039703 C = 5445.448328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.485 5.485 3 C 0.032 3.968 4 C -0.122 4.122 5 C -0.113 4.113 6 C 0.045 3.955 7 H 0.062 0.938 8 C 0.474 3.526 9 O -0.382 6.382 10 N -0.670 5.670 11 C 0.374 3.626 12 C -0.360 4.360 13 C -0.036 4.036 14 C -0.307 4.307 15 C 0.271 3.729 16 C -0.425 4.425 17 H 0.081 0.919 18 C 0.057 3.943 19 N -0.651 5.651 20 Si 0.894 3.106 21 H -0.272 1.272 22 H -0.278 1.278 23 H -0.264 1.264 24 N -0.474 5.474 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.022 0.978 28 H 0.082 0.918 29 H 0.041 0.959 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.396 0.604 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.696 12.089 -4.224 12.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.209 5.209 3 C -0.096 4.096 4 C -0.160 4.160 5 C -0.151 4.151 6 C -0.068 4.068 7 H 0.080 0.920 8 C 0.254 3.746 9 O -0.243 6.243 10 N -0.318 5.318 11 C 0.135 3.865 12 C -0.386 4.386 13 C -0.060 4.060 14 C -0.330 4.330 15 C 0.146 3.854 16 C -0.456 4.456 17 H 0.100 0.900 18 C -0.172 4.172 19 N -0.270 5.270 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.203 1.203 23 H -0.188 1.188 24 N -0.193 5.193 25 H 0.094 0.906 26 H 0.088 0.912 27 H 0.040 0.960 28 H 0.100 0.900 29 H 0.059 0.941 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.229 0.771 35 H 0.108 0.892 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.689 12.147 -1.931 12.319 hybrid contribution -0.323 -0.120 -1.385 1.427 sum 0.365 12.027 -3.315 12.481 Atomic orbital electron populations 1.22501 0.87534 1.02732 1.00301 1.65047 1.08382 1.13813 1.33608 1.23139 0.95152 0.90143 1.01154 1.22271 0.96845 0.97086 0.99759 1.22227 0.95251 0.97350 1.00293 1.22702 0.96969 0.94522 0.92591 0.91986 1.20336 0.80966 0.87558 0.85712 1.91144 1.37575 1.70719 1.24844 1.43460 1.72495 1.04990 1.10820 1.18625 0.93633 0.82975 0.91231 1.20487 1.28051 0.94403 0.95618 1.20550 0.95802 0.93538 0.96155 1.21612 1.19129 0.98751 0.93544 1.18386 0.87943 0.86671 0.92433 1.19573 1.42064 0.94293 0.89641 0.90039 1.26171 0.95482 0.95055 1.00540 1.70289 1.23569 1.02984 1.30138 0.86542 0.79034 0.79977 0.82549 1.19703 1.20314 1.18838 1.68714 1.20205 1.10613 1.19780 0.90580 0.91234 0.95952 0.90002 0.94105 0.90796 0.91379 0.90281 0.90924 0.77125 0.89215 0.88737 0.88661 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.44 60.07 0.57 0.83 16 2 N -0.48 -7.59 4.92 -231.72 -1.14 -8.73 16 3 C 0.03 0.38 6.49 -2.18 -0.01 0.37 16 4 C -0.12 -1.32 7.00 -25.35 -0.18 -1.50 16 5 C -0.11 -1.44 6.54 -25.34 -0.17 -1.61 16 6 C 0.04 0.69 2.68 -67.22 -0.18 0.51 16 7 H 0.06 0.83 7.97 -51.93 -0.41 0.42 16 8 C 0.47 9.80 6.67 -10.99 -0.07 9.73 16 9 O -0.38 -9.84 12.34 5.57 0.07 -9.77 16 10 N -0.67 -13.46 5.38 -11.40 -0.06 -13.52 16 11 C 0.37 9.29 7.43 -154.98 -1.15 8.14 16 12 C -0.36 -8.23 9.96 -38.89 -0.39 -8.62 16 13 C -0.04 -0.84 10.15 -39.39 -0.40 -1.24 16 14 C -0.31 -7.89 9.83 -38.66 -0.38 -8.27 16 15 C 0.27 7.74 6.55 -85.00 -0.56 7.19 16 16 C -0.43 -11.91 9.14 -37.74 -0.34 -12.25 16 17 H 0.08 2.14 7.85 -52.49 -0.41 1.73 16 18 C 0.06 1.53 5.50 -17.35 -0.10 1.44 16 19 N -0.65 -18.43 9.00 55.55 0.50 -17.93 16 20 Si 0.89 19.68 29.56 -169.99 -5.02 14.66 16 21 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.26 -5.69 7.11 56.52 0.40 -5.28 16 24 N -0.47 -13.54 5.74 -10.26 -0.06 -13.59 16 25 H 0.08 1.32 7.96 -51.93 -0.41 0.91 16 26 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.02 0.27 7.98 -51.93 -0.41 -0.14 16 28 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.04 0.42 7.91 -51.93 -0.41 0.01 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 1.19 7.85 -51.93 -0.41 0.78 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.40 6.16 8.70 -40.82 -0.36 5.81 16 35 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 36 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 37 H 0.10 2.27 8.06 -52.48 -0.42 1.85 16 38 H 0.27 7.36 8.29 -40.82 -0.34 7.02 16 LS Contribution 315.02 15.07 4.75 4.75 Total: -1.00 -33.22 315.02 -9.67 -42.89 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -5.34 Total: 6.55 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -3.36 Total: -5.30 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: -0.76 Total: -53.78 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.07 Total: -9.77 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.66 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.22 -9.67 -42.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882475331.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.445 kcal (2) G-P(sol) polarization free energy of solvation -33.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds