Wall clock time and date at job start Mon Mar 30 2020 01:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.48558 * 110.99867 * 2 1 4 4 C 1.54380 * 104.59412 * 200.96256 * 3 2 1 5 5 C 1.54266 * 105.06217 * 23.85507 * 4 3 2 6 6 C 1.48561 * 110.99667 * 244.58269 * 2 1 3 7 7 H 1.09001 * 110.51076 * 40.21232 * 6 2 1 8 8 C 1.50703 * 110.41072 * 277.81579 * 6 2 1 9 9 O 1.21271 * 119.99814 * 344.83044 * 8 6 2 10 10 N 1.34774 * 119.99861 * 164.82872 * 8 6 2 11 11 C 1.39265 * 119.99848 * 185.13967 * 10 8 6 12 12 C 1.39680 * 119.57150 * 174.61165 * 11 10 8 13 13 C 1.38655 * 119.49419 * 179.72272 * 12 11 10 14 14 C 1.38351 * 118.66694 * 0.02562 * 13 12 11 15 15 C 1.40576 * 119.13389 * 359.97438 * 14 13 12 16 16 C 1.41336 * 119.79075 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99654 * 0.02562 * 16 15 14 18 18 C 1.40017 * 120.00173 * 180.02562 * 16 15 14 19 19 N 1.30747 * 120.00356 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00310 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46964 * 89.99949 * 20 18 16 22 22 H 1.48495 * 109.47464 * 210.00125 * 20 18 16 23 23 H 1.48499 * 109.46868 * 330.00793 * 20 18 16 24 24 N 1.31903 * 119.57862 * 354.33964 * 11 10 8 25 25 H 1.08997 * 109.46804 * 175.42245 * 1 2 3 26 26 H 1.09001 * 109.46399 * 295.41699 * 1 2 3 27 27 H 1.08994 * 109.47411 * 55.41387 * 1 2 3 28 28 H 1.08997 * 110.41159 * 82.18618 * 3 2 1 29 29 H 1.09000 * 110.51507 * 319.79211 * 3 2 1 30 30 H 1.08998 * 110.32921 * 264.95612 * 4 3 2 31 31 H 1.09001 * 110.40864 * 142.79206 * 4 3 2 32 32 H 1.08997 * 110.32231 * 241.10824 * 5 4 3 33 33 H 1.08992 * 110.32673 * 118.89293 * 5 4 3 34 34 H 0.97000 * 120.00204 * 5.13899 * 10 8 6 35 35 H 1.07992 * 120.25416 * 359.70261 * 12 11 10 36 36 H 1.08001 * 120.66489 * 179.97438 * 13 12 11 37 37 H 1.08006 * 120.42942 * 179.97438 * 14 13 12 38 38 H 0.96994 * 120.00657 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4432 1.2502 -0.5345 5 6 3.4433 -0.0539 -1.3587 6 6 2.0014 -0.5953 -1.2527 7 1 1.4103 -0.2729 -2.1100 8 6 2.0104 -2.0993 -1.1575 9 8 1.8829 -2.6393 -0.0791 10 7 2.1600 -2.8441 -2.2707 11 6 2.0614 -4.2314 -2.1988 12 6 2.1050 -4.9873 -3.3725 13 6 2.0125 -6.3688 -3.2986 14 6 1.8784 -6.9594 -2.0546 15 6 1.8408 -6.1438 -0.9103 16 6 1.7047 -6.7325 0.3674 17 1 1.6304 -7.8057 0.4623 18 6 1.6663 -5.9243 1.5102 19 7 1.7558 -4.6250 1.3953 20 14 1.4857 -6.7023 3.1988 21 1 2.8310 -6.9959 3.7550 22 1 0.7705 -5.7651 4.1018 23 1 0.7122 -7.9645 3.0821 24 7 1.9335 -4.8149 -1.0228 25 1 -0.3633 -1.0244 -0.0820 26 1 -0.3632 0.4411 0.9282 27 1 -0.3634 0.5833 -0.8460 28 1 2.0080 1.7916 1.0121 29 1 1.4104 2.0229 -0.6590 30 1 4.1484 1.1748 0.2933 31 1 3.6953 2.0994 -1.1696 32 1 4.1483 -0.7693 -0.9353 33 1 3.6935 0.1555 -2.3986 34 1 2.3364 -2.4139 -3.1220 35 1 2.2096 -4.4996 -4.3303 36 1 2.0437 -6.9717 -4.1941 37 1 1.8035 -8.0330 -1.9640 38 1 1.7288 -4.0650 2.1869 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882475331.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:36 Heat of formation + Delta-G solvation = 12.653713 kcal Electronic energy + Delta-G solvation = -21640.158483 eV Core-core repulsion = 18482.693077 eV Total energy + Delta-G solvation = -3157.465406 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.21160 -39.91853 -38.39064 -35.85363 -34.80519 -33.12897 -32.22823 -31.36339 -29.86179 -27.43281 -26.62003 -24.45855 -23.27591 -22.34229 -21.82122 -20.63242 -19.52995 -18.02966 -17.92158 -16.86961 -16.44929 -16.26085 -15.84629 -15.61776 -15.48527 -15.07868 -14.71211 -14.66639 -14.23718 -13.90190 -13.69752 -13.28274 -12.92268 -12.84287 -12.71487 -12.56009 -12.51512 -12.34059 -12.29313 -12.00095 -11.77097 -11.51023 -11.45180 -10.83690 -10.49318 -9.88527 -9.41579 -9.00318 -8.78939 -8.03062 -6.41160 0.94184 1.26829 1.38637 1.50838 1.53276 2.16307 2.26374 2.28082 3.00573 3.16993 3.65754 3.69495 4.00711 4.06664 4.13820 4.27729 4.40667 4.41205 4.46177 4.60794 4.72160 4.77501 4.90954 4.91950 4.95957 4.96904 5.02556 5.08798 5.15463 5.27184 5.30034 5.68969 5.82086 5.90441 5.94017 6.07046 6.17406 6.40063 6.77753 6.89922 7.09744 7.80640 8.37394 8.58084 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.016262 B = 0.006755 C = 0.005141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.340086 B = 4144.039703 C = 5445.448328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.523 5.523 3 C 0.034 3.966 4 C -0.115 4.115 5 C -0.109 4.109 6 C 0.055 3.945 7 H 0.091 0.909 8 C 0.465 3.535 9 O -0.440 6.440 10 N -0.658 5.658 11 C 0.351 3.649 12 C -0.348 4.348 13 C -0.034 4.034 14 C -0.332 4.332 15 C 0.236 3.764 16 C -0.467 4.467 17 H 0.085 0.915 18 C 0.010 3.990 19 N -0.687 5.687 20 Si 0.973 3.027 21 H -0.266 1.266 22 H -0.275 1.275 23 H -0.255 1.255 24 N -0.509 5.509 25 H 0.034 0.966 26 H 0.078 0.922 27 H 0.049 0.951 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.103 0.897 32 H 0.047 0.953 33 H 0.107 0.893 34 H 0.418 0.582 35 H 0.132 0.868 36 H 0.137 0.863 37 H 0.103 0.897 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.973 13.889 -5.981 15.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.247 5.247 3 C -0.093 4.093 4 C -0.153 4.153 5 C -0.148 4.148 6 C -0.057 4.057 7 H 0.109 0.891 8 C 0.247 3.753 9 O -0.304 6.304 10 N -0.308 5.308 11 C 0.111 3.889 12 C -0.373 4.373 13 C -0.058 4.058 14 C -0.355 4.355 15 C 0.111 3.889 16 C -0.497 4.497 17 H 0.103 0.897 18 C -0.215 4.215 19 N -0.306 5.306 20 Si 0.794 3.206 21 H -0.191 1.191 22 H -0.200 1.200 23 H -0.179 1.179 24 N -0.229 5.229 25 H 0.053 0.947 26 H 0.097 0.903 27 H 0.067 0.933 28 H 0.103 0.897 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.121 0.879 32 H 0.066 0.934 33 H 0.126 0.874 34 H 0.255 0.745 35 H 0.150 0.850 36 H 0.154 0.846 37 H 0.121 0.879 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.977 13.983 -3.752 14.511 hybrid contribution -0.393 -0.632 -1.032 1.273 sum 0.584 13.351 -4.784 14.194 Atomic orbital electron populations 1.22388 0.87425 1.00629 1.01944 1.64961 1.08903 1.16559 1.34315 1.23217 0.95735 0.88191 1.02162 1.22292 0.96115 0.97129 0.99781 1.22263 0.92535 0.97398 1.02585 1.22623 0.99248 0.90171 0.93642 0.89136 1.21429 0.79028 0.89938 0.84870 1.91136 1.39951 1.72374 1.26915 1.43466 1.71780 1.03393 1.12176 1.19181 0.93351 0.85115 0.91204 1.20986 1.25133 0.94507 0.96673 1.21033 0.93920 0.94241 0.96646 1.21798 1.20416 0.99165 0.94105 1.18884 0.88659 0.87558 0.93804 1.19889 1.44443 0.94731 0.90687 0.89696 1.27031 0.94643 0.95450 1.04409 1.70514 1.25062 1.04296 1.30695 0.85355 0.79156 0.79071 0.77016 1.19051 1.19979 1.17853 1.68681 1.21238 1.10902 1.22083 0.94665 0.90350 0.93289 0.89703 0.91651 0.91586 0.87858 0.93428 0.87438 0.74481 0.85025 0.84551 0.87864 0.92000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.71 9.44 127.69 1.21 1.91 16 2 N -0.52 -15.93 4.92 -887.02 -4.36 -20.29 16 3 C 0.03 0.71 6.49 86.45 0.56 1.27 16 4 C -0.12 -2.15 7.00 31.49 0.22 -1.93 16 5 C -0.11 -2.55 6.54 31.49 0.21 -2.34 16 6 C 0.06 1.62 2.68 44.32 0.12 1.74 16 7 H 0.09 2.13 7.97 -2.39 -0.02 2.11 16 8 C 0.46 19.48 6.67 87.66 0.59 20.06 16 9 O -0.44 -23.80 12.34 -3.00 -0.04 -23.83 16 10 N -0.66 -26.11 5.38 -308.37 -1.66 -27.77 16 11 C 0.35 17.46 7.43 133.25 0.99 18.45 16 12 C -0.35 -15.19 9.96 22.72 0.23 -14.96 16 13 C -0.03 -1.53 10.15 22.40 0.23 -1.30 16 14 C -0.33 -17.25 9.83 22.87 0.22 -17.03 16 15 C 0.24 14.08 6.55 40.19 0.26 14.34 16 16 C -0.47 -27.41 9.14 23.46 0.21 -27.20 16 17 H 0.08 4.67 7.85 -2.91 -0.02 4.65 16 18 C 0.01 0.58 5.50 85.29 0.47 1.05 16 19 N -0.69 -41.11 9.00 21.83 0.20 -40.92 16 20 Si 0.97 42.24 29.56 68.60 2.03 44.26 16 21 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 22 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 23 H -0.25 -10.53 7.11 99.48 0.71 -9.82 16 24 N -0.51 -30.19 5.74 -186.36 -1.07 -31.26 16 25 H 0.03 1.27 7.96 -2.39 -0.02 1.25 16 26 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.05 1.10 7.98 -2.39 -0.02 1.08 16 28 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.07 1.06 7.91 -2.39 -0.02 1.04 16 30 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.05 1.41 7.85 -2.39 -0.02 1.39 16 33 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.42 12.09 8.70 -92.71 -0.81 11.28 16 35 H 0.13 4.58 8.06 -2.91 -0.02 4.55 16 36 H 0.14 4.86 8.06 -2.91 -0.02 4.84 16 37 H 0.10 5.01 8.06 -2.91 -0.02 4.99 16 38 H 0.27 15.40 8.29 -92.71 -0.77 14.63 16 Total: -1.00 -78.03 315.02 0.87 -77.16 By element: Atomic # 1 Polarization: 28.33 SS G_CDS: 0.26 Total: 28.59 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: 5.51 Total: -5.95 kcal Atomic # 7 Polarization: -113.34 SS G_CDS: -6.90 Total: -120.24 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.04 Total: -23.83 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.26 kcal Total: -78.03 0.87 -77.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882475331.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.814 kcal (2) G-P(sol) polarization free energy of solvation -78.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds