Wall clock time and date at job start Mon Mar 30 2020 01:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47189 * 2 1 4 4 C 1.50707 * 109.47170 * 240.00565 * 2 1 3 5 5 H 1.07999 * 120.00154 * 239.99924 * 4 2 1 6 6 C 1.37879 * 119.99912 * 59.99990 * 4 2 1 7 7 N 1.31518 * 119.99840 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99856 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47123 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46636 * 120.00167 * 8 6 4 11 11 H 1.48491 * 109.46977 * 239.99873 * 8 6 4 12 12 C 1.50692 * 109.47185 * 120.00639 * 2 1 3 13 13 O 1.21288 * 120.00063 * 119.99949 * 12 2 1 14 14 N 1.34780 * 120.00470 * 300.00073 * 12 2 1 15 15 C 1.46489 * 120.00422 * 184.80976 * 14 12 2 16 16 C 1.50702 * 112.85214 * 64.22875 * 15 14 12 17 17 N 1.31796 * 119.12251 * 44.19860 * 16 15 14 18 18 C 1.32333 * 120.81576 * 180.02562 * 17 16 15 19 19 C 1.38594 * 119.10701 * 0.02562 * 18 17 16 20 20 C 1.38602 * 118.39975 * 0.02562 * 19 18 17 21 21 N 1.31796 * 119.12398 * 224.23053 * 16 15 14 22 22 C 1.53784 * 113.68976 * 195.48994 * 15 14 12 23 23 C 1.53788 * 87.08019 * 89.13066 * 22 15 14 24 24 C 1.53784 * 113.61691 * 293.02761 * 15 14 12 25 25 H 1.09000 * 109.47445 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47320 * 299.99604 * 1 2 3 27 27 H 1.08999 * 109.47319 * 59.99618 * 1 2 3 28 28 H 0.97002 * 119.99640 * 179.97438 * 7 6 4 29 29 H 0.97001 * 119.99090 * 4.80678 * 14 12 2 30 30 H 1.08003 * 120.44454 * 179.72368 * 18 17 16 31 31 H 1.08004 * 120.80215 * 180.02562 * 19 18 17 32 32 H 1.07999 * 120.44757 * 180.02562 * 20 19 18 33 33 H 1.09000 * 113.61597 * 203.67602 * 22 15 14 34 34 H 1.08997 * 113.61672 * 334.58294 * 22 15 14 35 35 H 1.09000 * 113.61158 * 270.88753 * 23 22 15 36 36 H 1.08995 * 113.61364 * 139.97962 * 23 22 15 37 37 H 1.09000 * 113.61136 * 25.35226 * 24 15 14 38 38 H 1.08998 * 113.61467 * 156.25304 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 0.9427 0.8299 -2.6033 8 14 2.3225 -1.1192 -4.0081 9 1 3.1474 -2.2859 -3.6041 10 1 1.1678 -1.5861 -4.8167 11 1 3.1472 -0.1853 -4.8161 12 6 2.0323 -0.7105 1.2303 13 8 2.7296 -1.6966 1.1189 14 7 1.7067 -0.2503 2.4545 15 6 2.2796 -0.8762 3.6487 16 6 3.7757 -0.7161 3.7329 17 7 4.3113 0.4576 3.4637 18 6 5.6211 0.6356 3.5267 19 6 6.4303 -0.4324 3.8808 20 6 5.8304 -1.6513 4.1555 21 7 4.5137 -1.7537 4.0731 22 6 1.5468 -0.5100 4.9502 23 6 0.6372 -1.7218 4.6864 24 6 1.8006 -2.3195 3.8776 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 0.7087 1.1616 -3.4843 29 1 1.0931 0.4956 2.5448 30 1 6.0540 1.5988 3.3006 31 1 7.5025 -0.3177 3.9411 32 1 6.4294 -2.5055 4.4350 33 1 2.1639 -0.6134 5.8427 34 1 1.0250 0.4458 4.9034 35 1 -0.2390 -1.4867 4.0823 36 1 0.3936 -2.2886 5.5850 37 1 1.4840 -2.8244 2.9650 38 1 2.4872 -2.9175 4.4769 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893659164.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:16 Heat of formation + Delta-G solvation = 35.420941 kcal Electronic energy + Delta-G solvation = -21668.834331 eV Core-core repulsion = 18512.356186 eV Total energy + Delta-G solvation = -3156.478145 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.16130 -39.39042 -37.42906 -33.67289 -33.58546 -32.50115 -31.87601 -30.15951 -26.07056 -25.72196 -25.08481 -24.24847 -23.07824 -22.11812 -19.64091 -18.92532 -17.35451 -17.16851 -16.20991 -16.02471 -15.61622 -15.11294 -14.63192 -14.55031 -14.34478 -13.78927 -13.65438 -13.45112 -12.79788 -12.43726 -12.25954 -11.91095 -11.46648 -11.09978 -10.99431 -10.82971 -10.68820 -10.65274 -10.64150 -10.50911 -10.35727 -10.16120 -9.92863 -9.43098 -9.04318 -8.91678 -8.53469 -8.42900 -8.25926 -5.99641 -4.02207 1.00648 1.24914 3.33729 3.40972 3.49060 3.59123 3.79889 3.90425 4.10870 4.36586 4.50571 4.67171 4.69720 4.80281 5.04851 5.08749 5.17325 5.19624 5.33777 5.53996 5.69735 5.82417 5.88760 5.93020 6.19529 6.28227 6.41118 6.48518 6.51391 6.66555 6.87924 6.98133 7.15615 7.18070 7.53683 7.80864 8.03370 8.19786 8.29473 8.51307 9.07014 9.32024 9.63139 11.08050 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.019022 B = 0.005888 C = 0.005063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.597415 B = 4754.313194 C = 5528.556257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.031 3.969 3 H 0.052 0.948 4 C -0.497 4.497 5 H 0.073 0.927 6 C 0.058 3.942 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.524 3.476 13 O -0.538 6.538 14 N -0.714 5.714 15 C 0.216 3.784 16 C 0.338 3.662 17 N -0.504 5.504 18 C 0.146 3.854 19 C -0.240 4.240 20 C 0.146 3.854 21 N -0.504 5.504 22 C -0.124 4.124 23 C -0.139 4.139 24 C -0.123 4.123 25 H 0.031 0.969 26 H 0.012 0.988 27 H 0.093 0.907 28 H 0.259 0.741 29 H 0.400 0.600 30 H 0.165 0.835 31 H 0.144 0.856 32 H 0.165 0.835 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.458 -0.292 16.667 17.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.010 3.990 3 H 0.070 0.930 4 C -0.536 4.536 5 H 0.091 0.909 6 C -0.143 4.143 7 N -0.536 5.536 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.211 1.211 12 C 0.314 3.686 13 O -0.412 6.412 14 N -0.368 5.368 15 C 0.125 3.875 16 C 0.070 3.930 17 N -0.217 5.217 18 C -0.020 4.020 19 C -0.262 4.262 20 C -0.021 4.021 21 N -0.218 5.218 22 C -0.163 4.163 23 C -0.176 4.176 24 C -0.162 4.162 25 H 0.050 0.950 26 H 0.031 0.969 27 H 0.111 0.889 28 H 0.069 0.931 29 H 0.236 0.764 30 H 0.182 0.818 31 H 0.161 0.839 32 H 0.182 0.818 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.919 -1.000 16.343 16.836 hybrid contribution 1.281 0.215 -0.898 1.579 sum 5.200 -0.786 15.445 16.315 Atomic orbital electron populations 1.21738 0.96551 0.99787 1.00934 1.18864 0.94158 0.96800 0.89192 0.92999 1.21183 1.30723 1.12665 0.89028 0.90891 1.24942 0.95187 0.95093 0.99044 1.69887 1.37250 1.23150 1.23336 0.86429 0.78642 0.79782 0.82608 1.19651 1.21001 1.21087 1.21980 0.78467 0.83989 0.84163 1.90547 1.37934 1.26233 1.86529 1.45912 1.49500 1.37423 1.04012 1.19651 0.83681 0.96443 0.87695 1.23216 0.97305 0.83815 0.88693 1.68227 1.13427 1.25897 1.14109 1.23237 0.89159 0.99177 0.90438 1.22849 1.02630 0.95983 1.04713 1.23181 0.90832 0.96814 0.91253 1.68099 1.06724 1.32313 1.14620 1.23140 0.98039 0.99660 0.95431 1.22860 0.97529 0.96831 1.00429 1.23169 0.96813 0.94978 1.01216 0.94986 0.96872 0.88891 0.93075 0.76432 0.81779 0.83860 0.81778 0.89389 0.90288 0.89682 0.91057 0.90110 0.88238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 8.86 37.16 0.33 -2.75 16 2 C 0.03 0.80 2.65 -92.93 -0.25 0.55 16 3 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 4 C -0.50 -14.51 8.37 -34.44 -0.29 -14.80 16 5 H 0.07 2.27 6.75 -52.49 -0.35 1.91 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 7 N -0.90 -25.64 11.32 55.43 0.63 -25.01 16 8 Si 0.90 22.30 29.54 -169.99 -5.02 17.28 16 9 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 12 C 0.52 12.39 6.70 -10.99 -0.07 12.32 16 13 O -0.54 -14.46 14.08 5.55 0.08 -14.38 16 14 N -0.71 -13.30 4.97 -47.93 -0.24 -13.54 16 15 C 0.22 3.59 0.94 -132.16 -0.12 3.46 16 16 C 0.34 5.99 6.07 -157.19 -0.95 5.03 16 17 N -0.50 -8.74 10.21 -10.72 -0.11 -8.85 16 18 C 0.15 2.02 11.30 -17.20 -0.19 1.82 16 19 C -0.24 -2.81 10.17 -39.32 -0.40 -3.21 16 20 C 0.15 1.91 11.31 -17.20 -0.19 1.72 16 21 N -0.50 -8.37 8.92 -10.72 -0.10 -8.47 16 22 C -0.12 -1.54 7.36 -25.91 -0.19 -1.73 16 23 C -0.14 -1.69 7.99 -25.91 -0.21 -1.90 16 24 C -0.12 -1.95 6.73 -25.92 -0.17 -2.12 16 25 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.01 0.24 7.46 -51.93 -0.39 -0.15 16 27 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.40 6.53 7.95 -40.82 -0.32 6.21 16 30 H 0.17 1.70 8.06 -52.48 -0.42 1.28 16 31 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 32 H 0.17 1.52 8.06 -52.49 -0.42 1.10 16 33 H 0.09 1.01 8.09 -51.93 -0.42 0.59 16 34 H 0.08 0.88 8.09 -51.93 -0.42 0.46 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 1.51 7.35 -51.93 -0.38 1.13 16 38 H 0.10 1.52 7.21 -51.93 -0.37 1.15 16 LS Contribution 318.15 15.07 4.79 4.79 Total: -1.00 -34.52 318.15 -7.85 -42.37 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -5.07 Total: 5.87 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -2.81 Total: -0.07 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: 0.18 Total: -55.87 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: 0.08 Total: -14.38 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.52 -7.85 -42.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893659164.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.789 kcal (2) G-P(sol) polarization free energy of solvation -34.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds