Wall clock time and date at job start Mon Mar 30 2020 01:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46893 * 109.47282 * 2 1 4 4 C 1.46898 * 111.00020 * 196.38769 * 3 2 1 5 5 C 1.50701 * 109.47257 * 66.04737 * 4 3 2 6 6 H 1.08000 * 119.99995 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99980 * 180.02562 * 5 4 3 8 8 N 1.31505 * 120.00291 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99797 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47229 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47428 * 119.99931 * 9 7 5 12 12 H 1.48505 * 109.47067 * 239.99930 * 9 7 5 13 13 C 1.46897 * 111.00111 * 72.43206 * 3 2 1 14 14 C 1.50706 * 109.47037 * 199.46303 * 13 3 2 15 15 C 1.38640 * 120.29825 * 84.23577 * 14 13 3 16 16 N 1.31639 * 121.50913 * 179.97438 * 15 14 13 17 17 C 1.32502 * 121.69333 * 0.02562 * 16 15 14 18 18 O 1.34791 * 133.15423 * 180.02562 * 17 16 15 19 19 N 1.41324 * 109.45420 * 179.97438 * 18 17 16 20 20 C 1.29759 * 109.74600 * 0.02562 * 19 18 17 21 21 C 1.50699 * 126.34077 * 180.02562 * 20 19 18 22 22 C 1.40549 * 119.95520 * 359.97438 * 17 16 15 23 23 C 1.38186 * 120.30004 * 263.95381 * 14 13 3 24 24 H 1.09001 * 109.47169 * 301.23275 * 1 2 3 25 25 H 1.09006 * 109.47531 * 61.23843 * 1 2 3 26 26 H 1.09001 * 109.47410 * 181.23506 * 1 2 3 27 27 H 1.09002 * 109.46467 * 239.99797 * 2 1 3 28 28 H 1.08997 * 109.47105 * 120.00520 * 2 1 3 29 29 H 1.08996 * 109.47318 * 306.04285 * 4 3 2 30 30 H 1.08996 * 109.47382 * 186.04195 * 4 3 2 31 31 H 0.97003 * 120.00546 * 180.02562 * 8 7 5 32 32 H 1.08996 * 109.47143 * 319.46560 * 13 3 2 33 33 H 1.08995 * 109.47119 * 79.46476 * 13 3 2 34 34 H 1.07996 * 119.24419 * 359.95472 * 15 14 13 35 35 H 1.09004 * 109.46853 * 269.99504 * 21 20 19 36 36 H 1.08995 * 109.47278 * 29.98907 * 21 20 19 37 37 H 1.08996 * 109.47623 * 149.99372 * 21 20 19 38 38 H 1.07998 * 120.97135 * 0.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4356 1.4426 -0.3869 5 6 3.5819 1.0107 -1.8233 6 1 2.7102 0.7217 -2.3917 7 6 4.8287 0.9834 -2.4114 8 7 5.8901 1.3347 -1.7191 9 14 5.0100 0.4472 -4.1916 10 1 3.6749 0.1046 -4.7439 11 1 5.6048 1.5536 -4.9836 12 1 5.8948 -0.7434 -4.2623 13 6 1.8049 2.0192 1.3074 14 6 1.8595 3.5175 1.1539 15 6 0.7317 4.2219 0.7615 16 7 0.7525 5.5305 0.6204 17 6 1.8502 6.2377 0.8456 18 8 2.1290 7.5546 0.7756 19 7 3.4810 7.7687 1.1270 20 6 4.0453 6.6350 1.4100 21 6 5.4779 6.4310 1.8309 22 6 3.0318 5.5908 1.2465 23 6 3.0325 4.2021 1.4086 24 1 -0.3633 0.5329 0.8787 25 1 -0.3634 0.4945 -0.9009 26 1 -0.3634 -1.0274 0.0222 27 1 1.8932 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 4.0147 0.7773 0.2534 30 1 3.8014 2.4633 -0.2755 31 1 6.7672 1.3159 -2.1329 32 1 0.8288 1.7291 1.6961 33 1 2.5822 1.6964 1.9999 34 1 -0.1847 3.6847 0.5667 35 1 6.0969 6.2722 0.9478 36 1 5.8284 7.3132 2.3664 37 1 5.5446 5.5599 2.4827 38 1 3.9248 3.6793 1.7196 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893922719.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:42 Heat of formation + Delta-G solvation = 77.500731 kcal Electronic energy + Delta-G solvation = -21077.650273 eV Core-core repulsion = 17922.996845 eV Total energy + Delta-G solvation = -3154.653428 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.82162 -38.94865 -36.89572 -34.77609 -32.83739 -32.38214 -30.77911 -29.78516 -28.82235 -27.22868 -24.89626 -24.11142 -22.46738 -22.17325 -20.49744 -19.90931 -17.84872 -17.05315 -16.51102 -16.23048 -16.03855 -15.02322 -14.55498 -14.28926 -13.78951 -13.69597 -13.61828 -13.29265 -13.09870 -12.86224 -12.78552 -12.57913 -12.20975 -12.01404 -11.76028 -11.38200 -11.17824 -11.04304 -10.94852 -10.74815 -10.58932 -10.26241 -9.92858 -9.48735 -9.37685 -9.22476 -8.59586 -8.51873 -7.40158 -6.11746 -4.12052 0.58993 1.24885 2.06758 2.24816 3.25702 3.33994 3.38320 3.70155 3.82551 4.10963 4.36745 4.54198 4.84841 4.96572 5.02882 5.11336 5.14297 5.25215 5.34722 5.42254 5.49582 5.61373 5.78176 5.82520 5.88560 5.90956 6.00534 6.05115 6.28030 6.33181 6.50268 6.62293 6.69622 7.16118 7.17753 7.21260 7.70911 7.81560 7.97188 8.07912 8.42784 8.95415 9.52514 10.99166 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.014255 B = 0.006022 C = 0.004783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.798091 B = 4648.239417 C = 5852.269658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.056 3.944 3 N -0.533 5.533 4 C 0.191 3.809 5 C -0.507 4.507 6 H 0.064 0.936 7 C 0.056 3.944 8 N -0.898 5.898 9 Si 0.895 3.105 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.096 3.904 14 C -0.141 4.141 15 C 0.194 3.806 16 N -0.486 5.486 17 C 0.281 3.719 18 O -0.089 6.089 19 N -0.290 5.290 20 C 0.149 3.851 21 C -0.088 4.088 22 C -0.246 4.246 23 C 0.022 3.978 24 H 0.045 0.955 25 H 0.059 0.941 26 H 0.048 0.952 27 H 0.088 0.912 28 H 0.019 0.981 29 H -0.009 1.009 30 H 0.032 0.968 31 H 0.261 0.739 32 H 0.079 0.921 33 H 0.040 0.960 34 H 0.174 0.826 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.795 3.130 9.470 11.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.072 4.072 3 N -0.258 5.258 4 C 0.066 3.934 5 C -0.545 4.545 6 H 0.082 0.918 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.723 3.277 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.211 1.211 13 C -0.033 4.033 14 C -0.144 4.144 15 C 0.032 3.968 16 N -0.205 5.205 17 C 0.098 3.902 18 O -0.093 6.093 19 N -0.037 5.037 20 C -0.032 4.032 21 C -0.146 4.146 22 C -0.252 4.252 23 C -0.006 4.006 24 H 0.064 0.936 25 H 0.079 0.921 26 H 0.067 0.933 27 H 0.106 0.894 28 H 0.038 0.962 29 H 0.009 0.991 30 H 0.050 0.950 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.058 0.942 34 H 0.191 0.809 35 H 0.118 0.882 36 H 0.105 0.895 37 H 0.111 0.889 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -5.532 5.286 8.704 11.589 hybrid contribution 1.444 -1.861 -0.235 2.367 sum -4.088 3.425 8.469 10.008 Atomic orbital electron populations 1.21835 0.96508 1.00364 1.01678 1.21977 0.94156 0.89822 1.01198 1.62146 1.23553 1.16287 1.23827 1.19787 0.80748 0.96906 0.95981 1.21181 0.92932 1.43990 0.96424 0.91761 1.24960 0.95846 0.95542 0.98140 1.69939 0.98588 1.48642 1.36597 0.86480 0.78198 0.78203 0.84817 1.19606 1.21041 1.21064 1.20900 1.01199 0.88395 0.92768 1.20730 0.93728 0.97761 1.02167 1.22745 0.98494 0.86600 0.88997 1.66741 1.25834 1.08143 1.19801 1.20435 0.90551 0.85931 0.93262 1.89159 1.24151 1.18901 1.77135 1.79944 0.86365 1.18576 1.18796 1.24491 0.97407 0.89742 0.91596 1.20506 0.86420 1.04253 1.03387 1.21333 0.93953 0.96339 1.13572 1.21124 0.98120 0.90426 0.90905 0.93568 0.92147 0.93289 0.89385 0.96229 0.99100 0.95049 0.92988 0.90310 0.94224 0.80895 0.88194 0.89484 0.88916 0.83711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 10.00 37.16 0.37 -1.61 16 2 C 0.06 0.97 5.52 -3.83 -0.02 0.95 16 3 N -0.53 -10.19 4.37 -237.53 -1.04 -11.23 16 4 C 0.19 4.54 4.55 -4.98 -0.02 4.52 16 5 C -0.51 -13.52 8.28 -34.44 -0.29 -13.80 16 6 H 0.06 1.72 7.26 -52.49 -0.38 1.34 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -25.41 13.29 55.43 0.74 -24.68 16 9 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 10 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.10 1.47 4.98 -4.98 -0.02 1.44 16 14 C -0.14 -2.20 5.03 -104.49 -0.53 -2.72 16 15 C 0.19 2.95 10.85 -17.49 -0.19 2.76 16 16 N -0.49 -8.45 10.38 -12.98 -0.13 -8.59 16 17 C 0.28 5.05 8.64 -16.39 -0.14 4.91 16 18 O -0.09 -1.64 12.05 7.78 0.09 -1.55 16 19 N -0.29 -4.81 12.81 34.88 0.45 -4.36 16 20 C 0.15 2.18 7.46 -80.17 -0.60 1.58 16 21 C -0.09 -0.89 10.48 36.01 0.38 -0.52 16 22 C -0.25 -4.03 6.34 -105.14 -0.67 -4.70 16 23 C 0.02 0.35 8.62 -39.01 -0.34 0.02 16 24 H 0.05 0.55 6.53 -51.93 -0.34 0.21 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.09 1.72 6.58 -51.93 -0.34 1.38 16 28 H 0.02 0.32 8.05 -51.93 -0.42 -0.10 16 29 H -0.01 -0.22 8.12 -51.93 -0.42 -0.65 16 30 H 0.03 0.79 6.38 -51.93 -0.33 0.46 16 31 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.08 1.00 6.25 -51.93 -0.32 0.67 16 33 H 0.04 0.60 7.91 -51.93 -0.41 0.19 16 34 H 0.17 2.13 8.06 -52.49 -0.42 1.70 16 35 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.15 2.08 8.03 -52.49 -0.42 1.66 16 LS Contribution 322.16 15.07 4.85 4.85 Total: -1.00 -30.99 322.16 -7.28 -38.27 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: -5.06 Total: -3.12 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -2.16 Total: -5.72 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: 0.01 Total: -48.85 kcal Atomic # 8 Polarization: -1.64 SS G_CDS: 0.09 Total: -1.55 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.99 -7.28 -38.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893922719.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.772 kcal (2) G-P(sol) polarization free energy of solvation -30.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds