Wall clock time and date at job start Mon Mar 30 2020 01:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46893 * 109.47282 * 2 1 4 4 C 1.46898 * 111.00020 * 196.38769 * 3 2 1 5 5 C 1.50701 * 109.47257 * 66.04737 * 4 3 2 6 6 H 1.08000 * 119.99995 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99980 * 180.02562 * 5 4 3 8 8 N 1.31505 * 120.00291 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99797 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47229 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47428 * 119.99931 * 9 7 5 12 12 H 1.48505 * 109.47067 * 239.99930 * 9 7 5 13 13 C 1.46897 * 111.00111 * 72.43206 * 3 2 1 14 14 C 1.50706 * 109.47037 * 199.46303 * 13 3 2 15 15 C 1.38640 * 120.29825 * 84.23577 * 14 13 3 16 16 N 1.31639 * 121.50913 * 179.97438 * 15 14 13 17 17 C 1.32502 * 121.69333 * 0.02562 * 16 15 14 18 18 O 1.34791 * 133.15423 * 180.02562 * 17 16 15 19 19 N 1.41324 * 109.45420 * 179.97438 * 18 17 16 20 20 C 1.29759 * 109.74600 * 0.02562 * 19 18 17 21 21 C 1.50699 * 126.34077 * 180.02562 * 20 19 18 22 22 C 1.40549 * 119.95520 * 359.97438 * 17 16 15 23 23 C 1.38186 * 120.30004 * 263.95381 * 14 13 3 24 24 H 1.09001 * 109.47169 * 301.23275 * 1 2 3 25 25 H 1.09006 * 109.47531 * 61.23843 * 1 2 3 26 26 H 1.09001 * 109.47410 * 181.23506 * 1 2 3 27 27 H 1.09002 * 109.46467 * 239.99797 * 2 1 3 28 28 H 1.08997 * 109.47105 * 120.00520 * 2 1 3 29 29 H 1.08996 * 109.47318 * 306.04285 * 4 3 2 30 30 H 1.08996 * 109.47382 * 186.04195 * 4 3 2 31 31 H 0.97003 * 120.00546 * 180.02562 * 8 7 5 32 32 H 1.08996 * 109.47143 * 319.46560 * 13 3 2 33 33 H 1.08995 * 109.47119 * 79.46476 * 13 3 2 34 34 H 1.07996 * 119.24419 * 359.95472 * 15 14 13 35 35 H 1.09004 * 109.46853 * 269.99504 * 21 20 19 36 36 H 1.08995 * 109.47278 * 29.98907 * 21 20 19 37 37 H 1.08996 * 109.47623 * 149.99372 * 21 20 19 38 38 H 1.07998 * 120.97135 * 0.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4356 1.4426 -0.3869 5 6 3.5819 1.0107 -1.8233 6 1 2.7102 0.7217 -2.3917 7 6 4.8287 0.9834 -2.4114 8 7 5.8901 1.3347 -1.7191 9 14 5.0100 0.4472 -4.1916 10 1 3.6749 0.1046 -4.7439 11 1 5.6048 1.5536 -4.9836 12 1 5.8948 -0.7434 -4.2623 13 6 1.8049 2.0192 1.3074 14 6 1.8595 3.5175 1.1539 15 6 0.7317 4.2219 0.7615 16 7 0.7525 5.5305 0.6204 17 6 1.8502 6.2377 0.8456 18 8 2.1290 7.5546 0.7756 19 7 3.4810 7.7687 1.1270 20 6 4.0453 6.6350 1.4100 21 6 5.4779 6.4310 1.8309 22 6 3.0318 5.5908 1.2465 23 6 3.0325 4.2021 1.4086 24 1 -0.3633 0.5329 0.8787 25 1 -0.3634 0.4945 -0.9009 26 1 -0.3634 -1.0274 0.0222 27 1 1.8932 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 4.0147 0.7773 0.2534 30 1 3.8014 2.4633 -0.2755 31 1 6.7672 1.3159 -2.1329 32 1 0.8288 1.7291 1.6961 33 1 2.5822 1.6964 1.9999 34 1 -0.1847 3.6847 0.5667 35 1 6.0969 6.2722 0.9478 36 1 5.8284 7.3132 2.3664 37 1 5.5446 5.5599 2.4827 38 1 3.9248 3.6793 1.7196 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893922719.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:41 Heat of formation + Delta-G solvation = 55.956281 kcal Electronic energy + Delta-G solvation = -21078.584510 eV Core-core repulsion = 17922.996845 eV Total energy + Delta-G solvation = -3155.587666 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.06843 -40.22448 -38.34830 -35.96746 -34.79190 -33.67855 -32.01637 -31.25678 -29.81616 -28.85257 -26.41194 -25.34165 -24.16584 -23.45339 -21.70665 -21.32575 -19.09758 -18.49199 -18.28773 -17.51427 -17.28429 -16.75209 -16.01866 -15.82400 -15.26252 -14.87637 -14.58030 -14.42064 -14.32908 -14.21725 -14.01537 -13.84389 -13.74296 -13.54594 -13.00473 -12.82049 -12.60007 -12.56851 -12.39138 -12.27156 -12.10074 -11.78869 -11.52539 -11.22010 -10.68153 -10.66522 -10.56612 -9.87359 -8.94798 -8.18876 -6.25232 -0.62687 -0.03094 0.87679 0.98608 1.38375 1.41313 1.52209 2.38974 2.46008 2.67432 2.95176 3.14993 3.30675 3.49718 3.74213 3.82067 3.96938 3.99313 4.32091 4.41324 4.56603 4.57719 4.63169 4.64104 4.69477 4.77334 4.84726 5.05959 5.08075 5.16341 5.21065 5.28677 5.32803 5.44743 5.56767 5.69830 5.92536 6.11473 6.40988 6.56239 6.69345 6.91186 7.43341 8.91496 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.014255 B = 0.006022 C = 0.004783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.798091 B = 4648.239417 C = 5852.269658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.054 3.946 3 N -0.541 5.541 4 C 0.207 3.793 5 C -0.519 4.519 6 H 0.058 0.942 7 C 0.007 3.993 8 N -0.927 5.927 9 Si 0.954 3.046 10 H -0.266 1.266 11 H -0.285 1.285 12 H -0.278 1.278 13 C 0.100 3.900 14 C -0.147 4.147 15 C 0.197 3.803 16 N -0.504 5.504 17 C 0.259 3.741 18 O -0.117 6.117 19 N -0.307 5.307 20 C 0.158 3.842 21 C -0.088 4.088 22 C -0.257 4.257 23 C 0.019 3.981 24 H 0.069 0.931 25 H 0.051 0.949 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.027 0.973 29 H -0.034 1.034 30 H 0.014 0.986 31 H 0.262 0.738 32 H 0.115 0.885 33 H 0.043 0.957 34 H 0.205 0.795 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.431 2.177 9.932 11.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.073 4.073 3 N -0.265 5.265 4 C 0.080 3.920 5 C -0.557 4.557 6 H 0.076 0.924 7 C -0.192 4.192 8 N -0.568 5.568 9 Si 0.780 3.220 10 H -0.191 1.191 11 H -0.211 1.211 12 H -0.204 1.204 13 C -0.028 4.028 14 C -0.150 4.150 15 C 0.036 3.964 16 N -0.224 5.224 17 C 0.077 3.923 18 O -0.119 6.119 19 N -0.058 5.058 20 C -0.022 4.022 21 C -0.145 4.145 22 C -0.263 4.263 23 C -0.009 4.009 24 H 0.088 0.912 25 H 0.070 0.930 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.045 0.955 29 H -0.016 1.016 30 H 0.032 0.968 31 H 0.071 0.929 32 H 0.133 0.867 33 H 0.062 0.938 34 H 0.222 0.778 35 H 0.123 0.877 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -6.208 4.322 9.170 11.887 hybrid contribution 1.640 -1.606 -0.331 2.320 sum -4.568 2.715 8.838 10.313 Atomic orbital electron populations 1.21748 0.93175 1.02011 1.02365 1.22010 0.96771 0.88477 1.00059 1.62044 1.20225 1.17765 1.26500 1.19410 0.83409 0.94893 0.94254 1.21511 0.92752 1.43562 0.97915 0.92368 1.25721 0.95754 0.95783 1.01905 1.70032 0.98955 1.49707 1.38125 0.85554 0.78283 0.77827 0.80315 1.19053 1.21088 1.20358 1.20990 1.03274 0.87665 0.90910 1.20872 0.93859 0.98018 1.02234 1.23266 0.99531 0.85968 0.87673 1.66783 1.26038 1.09057 1.20569 1.20728 0.91484 0.86078 0.94022 1.89104 1.25496 1.19460 1.77793 1.79932 0.85678 1.19548 1.20612 1.25177 0.98772 0.88557 0.89723 1.20768 0.83448 1.06235 1.04078 1.21546 0.94100 0.96863 1.13784 1.21335 0.98723 0.90250 0.90566 0.91196 0.92976 0.91326 0.92515 0.95462 1.01587 0.96800 0.92887 0.86724 0.93843 0.77822 0.87668 0.87195 0.87017 0.82731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 10.00 71.98 0.72 -2.51 16 2 C 0.05 1.79 5.52 86.30 0.48 2.26 16 3 N -0.54 -19.96 4.37 -905.42 -3.96 -23.91 16 4 C 0.21 9.88 4.55 85.56 0.39 10.27 16 5 C -0.52 -27.84 8.28 25.60 0.21 -27.63 16 6 H 0.06 3.12 7.26 -2.91 -0.02 3.10 16 7 C 0.01 0.37 5.46 84.66 0.46 0.83 16 8 N -0.93 -52.83 13.29 21.45 0.28 -52.55 16 9 Si 0.95 43.32 29.54 68.60 2.03 45.35 16 10 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 12 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 13 C 0.10 2.81 4.98 85.56 0.43 3.23 16 14 C -0.15 -4.35 5.03 -19.78 -0.10 -4.45 16 15 C 0.20 5.68 10.85 84.82 0.92 6.60 16 16 N -0.50 -17.35 10.38 -308.22 -3.20 -20.55 16 17 C 0.26 9.41 8.64 85.16 0.74 10.15 16 18 O -0.12 -4.42 12.05 30.24 0.36 -4.06 16 19 N -0.31 -10.27 12.81 -43.56 -0.56 -10.83 16 20 C 0.16 4.57 7.46 45.00 0.34 4.90 16 21 C -0.09 -1.63 10.48 71.24 0.75 -0.89 16 22 C -0.26 -8.37 6.34 -20.20 -0.13 -8.50 16 23 C 0.02 0.59 8.62 22.64 0.20 0.78 16 24 H 0.07 1.34 6.53 -2.39 -0.02 1.33 16 25 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 26 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.06 2.20 6.58 -2.39 -0.02 2.19 16 28 H 0.03 0.84 8.05 -2.39 -0.02 0.83 16 29 H -0.03 -1.74 8.12 -2.39 -0.02 -1.76 16 30 H 0.01 0.71 6.38 -2.39 -0.02 0.70 16 31 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 32 H 0.11 2.42 6.25 -2.39 -0.01 2.40 16 33 H 0.04 1.22 7.91 -2.39 -0.02 1.20 16 34 H 0.21 4.39 8.06 -2.91 -0.02 4.36 16 35 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.16 4.33 8.03 -2.91 -0.02 4.31 16 Total: -1.00 -67.84 322.16 1.42 -66.42 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: 1.07 Total: 5.08 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: 5.39 Total: -4.95 kcal Atomic # 7 Polarization: -100.41 SS G_CDS: -7.43 Total: -107.84 kcal Atomic # 8 Polarization: -4.42 SS G_CDS: 0.36 Total: -4.06 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -67.84 1.42 -66.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893922719.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.373 kcal (2) G-P(sol) polarization free energy of solvation -67.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds