Wall clock time and date at job start Mon Mar 30 2020 01:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46905 * 109.47145 * 2 1 4 4 C 1.46900 * 110.99731 * 299.50855 * 3 2 1 5 5 C 1.50697 * 109.47352 * 294.00246 * 4 3 2 6 6 H 1.07996 * 120.00044 * 355.10122 * 5 4 3 7 7 C 1.37875 * 119.99954 * 175.09574 * 5 4 3 8 8 N 1.31509 * 120.00439 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99938 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47281 * 59.99630 * 9 7 5 11 11 H 1.48502 * 109.47455 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.47071 * 299.99853 * 9 7 5 13 13 C 1.46900 * 111.00340 * 63.46076 * 3 2 1 14 14 C 1.50700 * 109.47019 * 66.04838 * 13 3 2 15 15 C 1.38728 * 119.78365 * 270.17946 * 14 13 3 16 16 C 1.37668 * 120.50142 * 180.26039 * 15 14 13 17 17 C 1.39702 * 119.77927 * 359.52708 * 16 15 14 18 18 N 1.35903 * 133.45019 * 180.25391 * 17 16 15 19 19 C 1.30750 * 109.62379 * 180.02562 * 18 17 16 20 20 O 1.35286 * 125.03025 * 179.97438 * 19 18 17 21 21 N 1.36385 * 109.93799 * 359.97438 * 19 18 17 22 22 H 0.97006 * 126.36902 * 179.97438 * 21 19 18 23 23 C 1.38445 * 107.26555 * 359.97438 * 21 19 18 24 24 C 1.37931 * 119.78144 * 89.99875 * 14 13 3 25 25 H 1.09002 * 109.47356 * 301.36101 * 1 2 3 26 26 H 1.09000 * 109.46613 * 61.35571 * 1 2 3 27 27 H 1.08997 * 109.47080 * 181.35941 * 1 2 3 28 28 H 1.08995 * 109.47260 * 239.99645 * 2 1 3 29 29 H 1.08998 * 109.46856 * 119.99269 * 2 1 3 30 30 H 1.09000 * 109.47214 * 54.00446 * 4 3 2 31 31 H 1.09001 * 109.47454 * 174.00202 * 4 3 2 32 32 H 0.97004 * 120.00199 * 179.97438 * 8 7 5 33 33 H 1.08999 * 109.47062 * 306.05142 * 13 3 2 34 34 H 1.08996 * 109.47667 * 186.04682 * 13 3 2 35 35 H 1.08003 * 119.74987 * 0.06241 * 15 14 13 36 36 H 1.08005 * 120.10934 * 179.79107 * 16 15 14 37 37 H 0.96700 * 113.99203 * 90.03321 * 20 19 18 38 38 H 1.08000 * 120.07793 * 359.96034 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5583 2.1065 -1.1936 5 6 2.1894 1.5020 -2.4212 6 1 2.9255 0.7183 -2.3198 7 6 1.8270 1.9494 -3.6740 8 7 0.9302 2.9033 -3.7977 9 14 2.6088 1.1995 -5.1959 10 1 2.3170 -0.2559 -5.2363 11 1 2.0532 1.8503 -6.4096 12 1 4.0784 1.4086 -5.1515 13 6 1.6175 2.0857 1.2269 14 6 2.3086 1.4612 2.4115 15 6 1.7055 0.4091 3.0854 16 6 2.3212 -0.1688 4.1727 17 6 3.5673 0.3007 4.5952 18 7 4.4077 -0.0550 5.6022 19 6 5.4706 0.7059 5.5765 20 8 6.5079 0.6204 6.4408 21 7 5.3789 1.5985 4.5494 22 1 6.0346 2.2733 4.3134 23 6 4.1759 1.3624 3.9061 24 6 3.5384 1.9368 2.8164 25 1 -0.3634 0.5348 0.8775 26 1 -0.3632 0.4926 -0.9019 27 1 -0.3633 -1.0274 0.0244 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 0.4735 2.0300 -1.2676 31 1 1.8442 3.1556 -1.1172 32 1 0.6755 3.2182 -4.6791 33 1 0.5377 2.0067 1.3530 34 1 1.8990 3.1362 1.1544 35 1 0.7442 0.0428 2.7564 36 1 1.8444 -0.9853 4.6947 37 1 7.2094 0.0194 6.1549 38 1 4.0043 2.7538 2.2854 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893925055.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:45 Heat of formation + Delta-G solvation = 40.350569 kcal Electronic energy + Delta-G solvation = -20729.096119 eV Core-core repulsion = 17572.831739 eV Total energy + Delta-G solvation = -3156.264380 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.12945 -38.71151 -37.54926 -35.88874 -33.26977 -32.58871 -30.61752 -29.53508 -29.15109 -26.74810 -24.58507 -23.26238 -22.77052 -21.79918 -21.32103 -19.31422 -19.11865 -17.38244 -17.12320 -16.21137 -15.94345 -15.28375 -15.00126 -14.43459 -14.31696 -14.11772 -13.83082 -13.67460 -13.04525 -12.79332 -12.30939 -11.84668 -11.80169 -11.51752 -11.38523 -11.28735 -11.04711 -10.90814 -10.68563 -10.66013 -10.45210 -10.05716 -10.04151 -9.74625 -9.22859 -8.44127 -8.30592 -7.96138 -7.17480 -6.03186 -4.04122 0.91603 1.55852 2.26556 2.65002 3.32631 3.36874 3.39790 3.65373 3.90046 4.42790 4.50443 5.01820 5.04406 5.19109 5.27726 5.32520 5.45043 5.48072 5.69736 5.83767 5.86971 6.02067 6.10501 6.14528 6.19682 6.35156 6.47169 6.49313 6.61935 6.72655 6.82493 6.92334 6.96410 7.30599 7.43698 7.46096 7.69586 7.80437 8.08961 8.19668 8.54899 9.03933 9.60034 11.07343 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.027745 B = 0.003819 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.952073 B = 7330.039661 C = 7796.351016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.057 3.943 3 N -0.529 5.529 4 C 0.188 3.812 5 C -0.505 4.505 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.900 5.900 9 Si 0.896 3.104 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.085 3.915 14 C -0.036 4.036 15 C -0.113 4.113 16 C -0.070 4.070 17 C 0.048 3.952 18 N -0.487 5.487 19 C 0.440 3.560 20 O -0.446 6.446 21 N -0.603 5.603 22 H 0.422 0.578 23 C 0.060 3.940 24 C -0.094 4.094 25 H 0.045 0.955 26 H 0.069 0.931 27 H 0.047 0.953 28 H 0.079 0.921 29 H 0.057 0.943 30 H 0.005 0.995 31 H 0.024 0.976 32 H 0.261 0.739 33 H 0.042 0.958 34 H 0.076 0.924 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.407 0.593 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.134 -3.442 15.854 17.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.071 4.071 3 N -0.252 5.252 4 C 0.063 3.937 5 C -0.543 4.543 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.539 5.539 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.043 4.043 14 C -0.038 4.038 15 C -0.133 4.133 16 C -0.089 4.089 17 C -0.070 4.070 18 N -0.219 5.219 19 C 0.136 3.864 20 O -0.247 6.247 21 N -0.227 5.227 22 H 0.261 0.739 23 C -0.048 4.048 24 C -0.115 4.115 25 H 0.064 0.936 26 H 0.088 0.912 27 H 0.066 0.934 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.022 0.978 31 H 0.042 0.958 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.095 0.905 35 H 0.148 0.852 36 H 0.146 0.854 37 H 0.265 0.735 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.124 -3.645 16.688 18.146 hybrid contribution 0.526 0.375 -1.726 1.843 sum 6.650 -3.269 14.962 16.697 Atomic orbital electron populations 1.22404 0.99422 1.00903 1.02112 1.22022 0.92087 0.91409 1.01571 1.62409 1.59324 1.02033 1.01460 1.19804 0.94617 0.93536 0.85715 1.21102 1.22977 1.20318 0.89928 0.92001 1.24964 0.95252 0.95255 0.99061 1.69941 1.31933 1.28377 1.23673 0.86596 0.79593 0.79307 0.82115 1.20281 1.21413 1.20256 1.21073 0.96626 0.97959 0.88638 1.19725 0.93437 0.95091 0.95565 1.20930 1.00633 0.96506 0.95253 1.20172 0.91872 1.00100 0.96787 1.18735 0.96598 0.97238 0.94388 1.70599 1.02835 1.25581 1.22837 1.20277 0.90585 0.89564 0.86003 1.84821 1.30052 1.68364 1.41470 1.43356 1.19328 1.33396 1.26649 0.73948 1.18645 0.87850 1.00300 0.98010 1.19806 0.95046 1.01908 0.94777 0.93628 0.91192 0.93430 0.90253 0.92499 0.97761 0.95757 0.92913 0.93978 0.90544 0.85199 0.85360 0.73470 0.85515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.26 9.13 37.16 0.34 -2.92 16 2 C 0.06 1.07 5.50 -3.82 -0.02 1.05 16 3 N -0.53 -10.77 4.69 -237.52 -1.11 -11.88 16 4 C 0.19 4.66 4.48 -4.98 -0.02 4.63 16 5 C -0.50 -13.74 8.41 -34.44 -0.29 -14.03 16 6 H 0.06 1.68 7.29 -52.49 -0.38 1.30 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.13 13.29 55.43 0.74 -25.39 16 9 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.09 1.43 4.92 -4.98 -0.02 1.41 16 14 C -0.04 -0.54 4.90 -104.55 -0.51 -1.05 16 15 C -0.11 -1.54 7.86 -39.61 -0.31 -1.85 16 16 C -0.07 -0.95 10.10 -39.24 -0.40 -1.34 16 17 C 0.05 0.71 7.22 -84.68 -0.61 0.10 16 18 N -0.49 -7.19 11.31 -12.24 -0.14 -7.33 16 19 C 0.44 5.24 9.39 -88.93 -0.84 4.41 16 20 O -0.45 -3.82 13.63 -17.55 -0.24 -4.05 16 21 N -0.60 -6.63 6.26 -11.90 -0.07 -6.71 16 22 H 0.42 3.25 8.96 -40.82 -0.37 2.88 16 23 C 0.06 0.83 7.30 -83.87 -0.61 0.22 16 24 C -0.09 -1.33 9.70 -39.52 -0.38 -1.72 16 25 H 0.04 0.71 5.70 -51.93 -0.30 0.41 16 26 H 0.07 1.42 6.36 -51.93 -0.33 1.09 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.08 1.64 6.94 -51.93 -0.36 1.28 16 29 H 0.06 0.96 5.90 -51.93 -0.31 0.65 16 30 H 0.00 0.12 6.04 -51.93 -0.31 -0.19 16 31 H 0.02 0.64 7.93 -51.93 -0.41 0.23 16 32 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 33 H 0.04 0.69 6.03 -51.93 -0.31 0.38 16 34 H 0.08 1.28 7.87 -51.93 -0.41 0.87 16 35 H 0.13 1.61 7.24 -52.48 -0.38 1.23 16 36 H 0.13 1.50 8.06 -52.48 -0.42 1.08 16 37 H 0.41 1.26 9.06 45.56 0.41 1.68 16 38 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 312.30 15.07 4.71 4.71 Total: -1.00 -32.51 312.30 -8.78 -41.29 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -3.86 Total: 2.70 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -3.78 Total: -9.63 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: -0.59 Total: -51.31 kcal Atomic # 8 Polarization: -3.82 SS G_CDS: -0.24 Total: -4.05 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.51 -8.78 -41.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893925055.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.641 kcal (2) G-P(sol) polarization free energy of solvation -32.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds