Wall clock time and date at job start Mon Mar 30 2020 01:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.28443 * 125.19284 * 2 1 4 4 C 1.30878 * 110.94804 * 180.31111 * 3 2 1 5 5 C 1.50700 * 126.05656 * 179.67303 * 4 3 2 6 6 C 1.53003 * 117.49530 * 163.66540 * 5 4 3 7 7 C 1.52997 * 117.49719 * 95.04528 * 5 4 3 8 8 C 1.39646 * 107.88213 * 359.71466 * 4 3 2 9 9 C 1.36651 * 125.19334 * 179.81964 * 2 1 3 10 10 C 1.47015 * 126.89686 * 359.96986 * 9 2 1 11 11 O 1.21672 * 120.00104 * 353.04816 * 10 9 2 12 12 N 1.34776 * 119.99697 * 173.05039 * 10 9 2 13 13 C 1.36840 * 119.99775 * 177.94600 * 12 10 9 14 14 H 1.08002 * 119.99678 * 322.46491 * 13 12 10 15 15 C 1.39051 * 120.00136 * 142.47177 * 13 12 10 16 16 N 1.31364 * 120.00170 * 353.74167 * 15 13 12 17 17 Si 1.86803 * 119.99943 * 173.74531 * 15 13 12 18 18 H 1.48502 * 109.46992 * 269.99440 * 17 15 13 19 19 H 1.48494 * 109.47098 * 29.99928 * 17 15 13 20 20 H 1.48506 * 109.46771 * 149.99870 * 17 15 13 21 21 C 1.46497 * 120.00474 * 357.94252 * 12 10 9 22 22 C 1.52995 * 117.50494 * 159.38392 * 21 12 10 23 23 C 1.53002 * 60.00205 * 252.51276 * 22 21 12 24 24 H 1.09001 * 109.47381 * 267.21158 * 1 2 3 25 25 H 1.09000 * 109.47129 * 27.21469 * 1 2 3 26 26 H 1.09003 * 109.47311 * 147.21854 * 1 2 3 27 27 H 1.08999 * 115.55362 * 309.37398 * 5 4 3 28 28 H 1.08999 * 117.50294 * 0.02562 * 6 5 4 29 29 H 1.09008 * 117.49861 * 145.02096 * 6 5 4 30 30 H 1.08997 * 117.50254 * 214.97940 * 7 5 4 31 31 H 1.09000 * 117.49700 * 359.97438 * 7 5 4 32 32 H 1.08000 * 127.32477 * 180.02562 * 8 4 3 33 33 H 0.96996 * 120.00547 * 175.18799 * 16 15 13 34 34 H 1.09009 * 115.54859 * 305.09434 * 21 12 10 35 35 H 1.09009 * 117.49617 * 0.02562 * 22 21 12 36 36 H 1.08995 * 117.50258 * 145.01755 * 22 21 12 37 37 H 1.09000 * 117.49589 * 252.51061 * 23 22 21 38 38 H 1.08991 * 117.50157 * 107.48792 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2053 1.0497 0.0000 4 6 3.4738 0.7276 -0.0066 5 6 4.6333 1.6902 -0.0157 6 6 6.0109 1.1402 0.3593 7 6 5.2609 2.0529 1.3316 8 6 3.5624 -0.6660 -0.0048 9 6 2.2526 -1.1167 0.0035 10 6 1.8005 -2.5156 0.0085 11 8 0.6182 -2.7724 0.1375 12 7 2.6957 -3.5136 -0.1296 13 6 2.2804 -4.8166 -0.0828 14 1 1.4986 -5.1099 0.6021 15 6 2.8650 -5.7631 -0.9170 16 7 3.7269 -5.3872 -1.8344 17 14 2.4247 -7.5691 -0.7333 18 1 3.3541 -8.2095 0.2318 19 1 1.0315 -7.6907 -0.2341 20 1 2.5387 -8.2430 -2.0518 21 6 4.1134 -3.2035 -0.3300 22 6 5.1295 -4.2998 -0.0037 23 6 4.9935 -3.0846 0.9159 24 1 -0.3634 -0.0500 1.0264 25 1 -0.3633 0.9139 -0.4700 26 1 -0.3634 -0.8640 -0.5564 27 1 4.5921 2.4687 -0.7775 28 1 6.0787 0.0822 0.6121 29 1 6.8765 1.5568 -0.1560 30 1 5.6329 3.0698 1.4562 31 1 4.8349 1.5955 2.2246 32 1 4.4611 -1.2650 -0.0085 33 1 4.1871 -6.0527 -2.3693 34 1 4.3364 -2.5436 -1.1685 35 1 4.7431 -5.2521 0.3597 36 1 6.0210 -4.3616 -0.6277 37 1 5.7957 -2.3468 0.8969 38 1 4.5177 -3.2372 1.8846 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930616842.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:31 Heat of formation + Delta-G solvation = 122.314023 kcal Electronic energy + Delta-G solvation = -21880.617359 eV Core-core repulsion = 18727.907181 eV Total energy + Delta-G solvation = -3152.710178 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.94622 -38.65420 -37.08907 -36.22640 -32.98493 -32.52479 -31.46031 -30.06008 -26.79295 -25.35948 -23.22795 -22.37890 -22.10127 -21.51632 -21.04894 -19.92640 -18.31389 -17.05565 -16.48371 -15.83715 -15.54045 -15.24941 -15.09000 -14.20072 -14.11406 -13.93178 -13.38502 -13.16392 -12.83639 -12.38968 -12.11295 -11.94756 -11.61975 -11.38041 -11.31106 -11.22170 -10.77672 -10.66850 -10.51986 -10.45441 -10.37958 -9.97505 -9.83734 -9.22260 -8.81113 -8.62733 -8.37807 -8.24869 -7.61286 -6.37916 -4.10156 2.08012 2.97716 3.01563 3.13756 3.20427 3.25674 4.00105 4.04728 4.20913 4.56803 4.74178 4.79980 5.03641 5.10105 5.11476 5.27196 5.42542 5.57512 5.61571 5.72645 5.79500 5.83772 5.92613 5.96288 6.07264 6.12048 6.15467 6.23607 6.34475 6.38831 6.46659 6.78071 6.93005 7.08405 7.22045 7.34297 7.43680 8.08386 8.34573 8.66119 9.02616 9.21976 9.82853 10.62413 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.021805 B = 0.006403 C = 0.005196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.807542 B = 4371.869013 C = 5387.954316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.271 5.271 3 N -0.295 5.295 4 C 0.041 3.959 5 C -0.064 4.064 6 C -0.168 4.168 7 C -0.171 4.171 8 C -0.213 4.213 9 C 0.002 3.998 10 C 0.520 3.480 11 O -0.585 6.585 12 N -0.390 5.390 13 C -0.311 4.311 14 H 0.094 0.906 15 C 0.043 3.957 16 N -0.855 5.855 17 Si 0.921 3.079 18 H -0.276 1.276 19 H -0.268 1.268 20 H -0.282 1.282 21 C 0.104 3.896 22 C -0.112 4.112 23 C -0.231 4.231 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.106 0.894 27 H 0.112 0.888 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.177 0.823 33 H 0.270 0.730 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.895 8.677 2.830 10.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.058 5.058 3 N -0.128 5.128 4 C -0.116 4.116 5 C -0.084 4.084 6 C -0.206 4.206 7 C -0.209 4.209 8 C -0.241 4.241 9 C -0.126 4.126 10 C 0.309 3.691 11 O -0.470 6.470 12 N -0.107 5.107 13 C -0.439 4.439 14 H 0.112 0.888 15 C -0.164 4.164 16 N -0.490 5.490 17 Si 0.747 3.253 18 H -0.202 1.202 19 H -0.192 1.192 20 H -0.207 1.207 21 C -0.001 4.001 22 C -0.150 4.150 23 C -0.269 4.269 24 H 0.095 0.905 25 H 0.102 0.898 26 H 0.125 0.875 27 H 0.130 0.870 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.194 0.806 33 H 0.080 0.920 34 H 0.124 0.876 35 H 0.118 0.882 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.447 9.329 2.674 10.299 hybrid contribution 0.363 -1.518 -0.068 1.563 sum 3.810 7.811 2.606 9.073 Atomic orbital electron populations 1.22130 0.73257 1.04781 1.04193 1.45393 1.07353 1.01955 1.51087 1.72896 1.03651 1.13983 1.22226 1.20914 0.90662 0.92944 1.07058 1.19923 0.89804 0.99271 0.99388 1.22992 0.94077 1.00353 1.03146 1.22953 1.03799 1.00249 0.93856 1.22954 0.97320 0.94008 1.09826 1.21935 0.90764 0.90553 1.09383 1.16883 0.85806 0.82209 0.84246 1.90613 1.16140 1.83905 1.56328 1.42613 1.03344 1.04729 1.59995 1.19471 1.22324 0.82128 1.19955 0.88804 1.25434 0.96654 1.00565 0.93729 1.69985 1.25417 1.34624 1.19016 0.85997 0.79519 0.82010 0.77736 1.20153 1.19198 1.20719 1.21348 0.81217 1.02144 0.95397 1.22783 0.98924 0.94032 0.99277 1.23685 1.03446 1.03294 0.96523 0.90479 0.89831 0.87511 0.86976 0.88180 0.88413 0.88736 0.88827 0.80636 0.92006 0.87635 0.88207 0.89962 0.89680 0.89563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.60 10.66 59.85 0.64 2.23 16 2 N -0.27 -5.42 3.75 -63.88 -0.24 -5.66 16 3 N -0.30 -5.68 11.90 33.63 0.40 -5.28 16 4 C 0.04 0.74 6.85 -82.47 -0.57 0.18 16 5 C -0.06 -0.89 6.33 -91.77 -0.58 -1.47 16 6 C -0.17 -1.94 10.02 -26.73 -0.27 -2.20 16 7 C -0.17 -2.00 10.23 -26.73 -0.27 -2.27 16 8 C -0.21 -4.12 8.21 -38.95 -0.32 -4.44 16 9 C 0.00 0.04 6.87 -82.06 -0.56 -0.52 16 10 C 0.52 13.12 7.60 -12.70 -0.10 13.03 16 11 O -0.58 -15.91 14.75 5.21 0.08 -15.83 16 12 N -0.39 -9.84 2.87 -109.09 -0.31 -10.15 16 13 C -0.31 -8.28 8.41 -15.01 -0.13 -8.41 16 14 H 0.09 2.61 7.71 -52.49 -0.40 2.20 16 15 C 0.04 1.07 3.76 -17.45 -0.07 1.01 16 16 N -0.85 -21.54 10.27 55.50 0.57 -20.97 16 17 Si 0.92 19.77 29.56 -169.99 -5.03 14.75 16 18 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16 19 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 20 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 21 C 0.10 2.26 2.96 -67.93 -0.20 2.06 16 22 C -0.11 -2.27 7.65 -26.73 -0.20 -2.47 16 23 C -0.23 -4.19 8.83 -26.73 -0.24 -4.43 16 24 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 26 H 0.11 1.91 6.66 -51.93 -0.35 1.57 16 27 H 0.11 1.42 8.14 -51.93 -0.42 0.99 16 28 H 0.10 1.21 7.22 -51.93 -0.37 0.83 16 29 H 0.10 0.92 8.14 -51.92 -0.42 0.49 16 30 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.18 3.17 2.75 -52.49 -0.14 3.02 16 33 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 34 H 0.11 2.29 6.73 -51.92 -0.35 1.94 16 35 H 0.10 2.23 6.20 -51.92 -0.32 1.90 16 36 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 37 H 0.08 1.29 7.66 -51.93 -0.40 0.89 16 38 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 LS Contribution 311.19 15.07 4.69 4.69 Total: -1.00 -30.07 311.19 -7.56 -37.63 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -4.86 Total: 8.54 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -2.86 Total: -7.71 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: 0.42 Total: -42.06 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: 0.08 Total: -15.83 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.03 Total: 14.75 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.07 -7.56 -37.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930616842.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.945 kcal (2) G-P(sol) polarization free energy of solvation -30.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds